1
|
Valastyan S and Weinberg RA: Tumor
metastasis: Molecular insights and evolving paradigms. Cell.
147:275–292. 2011. View Article : Google Scholar : PubMed/NCBI
|
2
|
van de Vijver MJ, He YD, van't Veer LJ,
Dai H, Hart AA, Voskuil DW, Schreiber GJ, Peterse JL, Roberts C,
Marton MJ, et al: A gene-expression signature as a predictor of
survival in breast cancer. N engl J Med. 347:1999–2009. 2002.
View Article : Google Scholar : PubMed/NCBI
|
3
|
Minn AJ, Gupta GP, Siegel PM, Bos PD, Shu
W, Giri DD, Viale A, Olshen AB, Gerald WL and Massagué J: Genes
that mediate breast cancer metastasis to lung. Nature. 436:518–524.
2005. View Article : Google Scholar : PubMed/NCBI
|
4
|
Van Veer LJ, Dai H, Van De Vijver MJ, Van
Der Kooy K, Marton MJ, Witteveen AT, Schreiber GJ, Kerkhoven RM,
Roberts C, Bernards Â, et al: Gene expression profiling predicts
clinical outcome of breast cancer. Nature. 415:530–536. 2002.
View Article : Google Scholar
|
5
|
Minn AJ, Kang Y, Serganova I, Gupta GP,
Giri DD, Doubrovin M, Ponomarev V, Gerald WL, Blasberg R and
Massagué J: Distinct organ-specific metastatic potential of
individual breast cancer cells and primary tumors. J Clin Invest.
115:44–55. 2005. View
Article : Google Scholar : PubMed/NCBI
|
6
|
Gupta GP, Nguyen DX, Chiang AC, Bos PD,
Kim JY, Nadal C, Gomis RR, Manova-Todorova K and Massagué J:
Mediators of vascular remodelling co-opted for sequential steps in
lung metastasis. Nature. 446:765–770. 2007. View Article : Google Scholar : PubMed/NCBI
|
7
|
Oskarsson T, Acharyya S, Zhang XH,
Vanharanta S, Tavazoie SF, Morris PG, Downey RJ, Manova-Todorova K,
Brogi E and Massagué J: Breast cancer cells produce tenascin C as a
metastatic niche component to colonize the lungs. Nat Med.
17:867–874. 2011. View
Article : Google Scholar : PubMed/NCBI
|
8
|
Padua D, Zhang XH, Wang Q, Nadal C, Gerald
WL, Gomis RR and Massagué J: TGFbeta primes breast tumors for lung
metastasis seeding through angiopoietin-like 4. Cell. 133:66–77.
2008. View Article : Google Scholar : PubMed/NCBI
|
9
|
Bos PD, Zhang XH, Nadal C, Shu W, Gomis
RR, Nguyen DX, Minn AJ, van de Vijver MJ, Gerald WL, Foekens JA, et
al: Genes that mediate breast cancer metastasis to the brain.
Nature. 459:1005–1009. 2009. View Article : Google Scholar : PubMed/NCBI
|
10
|
De Larco JE, Wuertz BR, Rosner KA,
Erickson SA, Gamache DE, Manivel JC and Furcht LT: A potential role
for interleukin-8 in the metastatic phenotype of breast carcinoma
cells. Am J Pathol. 158:639–646. 2001. View Article : Google Scholar : PubMed/NCBI
|
11
|
Yang S, Zhang JJ and Huang XY: Mouse
models for tumor metastasis. Methods Mol Biol. 928:221–228.
2012.PubMed/NCBI
|
12
|
Kato H, Honma R, Sanda T, Fujiwara T, Ito
E, Yanagisawa Y, Imai J, Okamoto T and Watanabe S: Knock down of
hSNF5/Ini1 causes cell cycle arrest and apoptosis in a
p53-dependent manner. Biochem Biophys Res Commun. 361:580–585.
2007. View Article : Google Scholar : PubMed/NCBI
|
13
|
Huang DW, Sherman BT, Tan Q, Collins JR,
Alvord WG, Roayaei J, Stephens R, Baseler MW, Lane HC and Lempicki
RA: The DAVID Gene Functional Classification Tool: A novel
biological module-centric algorithm to functionally analyze large
gene lists. Genome Biol. 8:R1832007. View Article : Google Scholar : PubMed/NCBI
|
14
|
Shannon P, Markiel A, Ozier O, Baliga NS,
Wang JT, Ramage D, Amin N, Schwikowski B and Ideker T: Cytoscape: A
software environment for integrated models of biomolecular
interaction networks. Genome Res. 13:2498–2504. 2003. View Article : Google Scholar : PubMed/NCBI
|
15
|
Saito R, Smoot ME, Ono K, Ruscheinski J,
Wang PL, Lotia S, Pico AR, Bader GD and Ideker T: A travel guide to
Cytoscape plugins. Nat Methods. 9:1069–1076. 2012. View Article : Google Scholar : PubMed/NCBI
|
16
|
Cline MS, Smoot M, Cerami E, Kuchinsky A,
Landys N, Workman C, Christmas R, Avila-Campilo I, Creech M, Gross
B, et al: Integration of biological networks and gene expression
data using Cytoscape. Nat Protoc. 2:2366–2382. 2007. View Article : Google Scholar : PubMed/NCBI
|
17
|
Talmadge JE and Fidler IJ: AACR centennial
series: the biology of cancer metastasis: historical perspective.
Cancer Res. 70:5649–5669. 2010. View Article : Google Scholar : PubMed/NCBI
|
18
|
Sun X, Cheng G, Hao M, Zheng J, Zhou X,
Zhang J, Taichman RS, Pienta KJ and Wang J: CXCL12/CXCR4/CXCR7
chemokine axis and cancer progression. Cancer Metastasis Rev.
29:709–722. 2010. View Article : Google Scholar : PubMed/NCBI
|
19
|
Balkwill F: Cancer and the chemokine
network. Nat Rev Cancer. 4:540–550. 2004. View Article : Google Scholar : PubMed/NCBI
|
20
|
Waugh DJ and Wilson C: The interleukin-8
pathway in cancer. Clin Cancer Res. 14:6735–6741. 2008. View Article : Google Scholar : PubMed/NCBI
|
21
|
Kim MY, Oskarsson T, Acharyya S, Nguyen
DX, Zhang XH, Norton L and Massagué J: Tumor self-seeding by
circulating cancer cells. Cell. 139:1315–1326. 2009. View Article : Google Scholar
|
22
|
Alix-Panabières C and Pantel K: Challenges
in circulating tumour cell research. Nat Rev Cancer. 14:623–631.
2014. View
Article : Google Scholar : PubMed/NCBI
|
23
|
Joyce JA and Pollard JW:
Microenvironmental regulation of metastasis. Nat Rev Cancer.
9:239–252. 2009. View
Article : Google Scholar : PubMed/NCBI
|
24
|
Gaiteri C, Ding Y, French B, Tseng GC and
Sibille E: Beyond modules and hubs: The potential of gene
coexpression networks for investigating molecular mechanisms of
complex brain disorders. Genes Brain Behav. 13:13–24. 2014.
View Article : Google Scholar
|
25
|
Lee WP and Tzou WS: Computational methods
for discovering gene networks from expression data. Brief
Bioinform. 10:408–423. 2009.PubMed/NCBI
|
26
|
Malik A, Lee EJ, Jan AT, Ahmad S, Cho KH,
Kim J and Choi I: Network analysis for the identification of
differentially expressed hub genes using myogenin knock-down muscle
satellite cells. PLoS One. 10:e01335972015. View Article : Google Scholar : PubMed/NCBI
|
27
|
Liang Y, Wu H, Lei R, Chong RA, Wei Y, Lu
X, Tagkopoulos I, Kung SY, Yang Q, Hu G, et al: Transcriptional
network analysis identifies BACH1 as a master regulator of breast
cancer bone metastasis. J Biol Chem. 287:33533–33544. 2012.
View Article : Google Scholar : PubMed/NCBI
|
28
|
Bergmann S, Ihmels J and Barkai N:
Similarities and differences in genome-wide expression data of six
organisms. PLoS Biol. 2:E92004. View Article : Google Scholar : PubMed/NCBI
|
29
|
Nasu T, Oku Y, Takifuji K, Hotta T,
Yokoyama S, Matsuda K, Tamura K, Ieda J, Yamamoto N, Takemura S, et
al: Predicting lymph node metastasis in early colorectal cancer
using the CITED1 expression. J Surg Res. 185:136–142. 2013.
View Article : Google Scholar : PubMed/NCBI
|
30
|
Ideker T and Krogan NJ: Differential
network biology. Mol Syst Biol. 8:5652012. View Article : Google Scholar : PubMed/NCBI
|
31
|
Sun T, Gao Y, Tan W, Ma S, Zhang X, Wang
Y, Zhang Q, Guo Y, Zhao D, Zeng C, et al: Haplotypes in matrix
metalloproteinase gene cluster on chromosome 11q22 contribute to
the risk of lung cancer development and progression. Clin Cancer
Res. 12:7009–7017. 2006. View Article : Google Scholar : PubMed/NCBI
|
32
|
LaPorte J and Varela C: Organic and
hierarchical concentric layouts for distributed system
visualization. RPI Comput Sci Tech Rep. 1–8. 2008.
|