1
|
Torre LA, Islami F, Siegel RL, Ward EM and
Jemal A: Global Cancer in Women: Burden and Trends. Cancer
Epidemiol Biomarkers Prev. 26:444–457. 2017. View Article : Google Scholar : PubMed/NCBI
|
2
|
Fan L, Strasser-Weippl K, Li JJ, St Louis
J, Finkelstein DM, Yu KD, Chen WQ, Shao ZM and Goss PE: Breast
cancer in China. Lancet Oncol. 15:e279–e289. 2014. View Article : Google Scholar : PubMed/NCBI
|
3
|
Sung H, Ferlay J, Siegel RL, Laversanne M,
Soerjomataram I, Jemal A and Bray F: Global Cancer Statistics 2020:
GLOBOCAN Estimates of Incidence and Mortality Worldwide for 36
Cancers in 185 Countries. CA Cancer J Clin. 71:209–249. 2021.
View Article : Google Scholar : PubMed/NCBI
|
4
|
Siegel RL, Miller KD, Wagle NS and Jemal
A: Cancer statistics, 2023. CA Cancer J Clin. 73:17–48. 2023.
View Article : Google Scholar : PubMed/NCBI
|
5
|
Zhang L, Chen W, Liu S and Chen C:
Targeting breast cancer stem cells. Int J Biol Sci. 19:552–570.
2023. View Article : Google Scholar : PubMed/NCBI
|
6
|
Yun CW and Lee SH: The roles of autophagy
in cancer. Int J Mol Sci. 19:34662018. View Article : Google Scholar : PubMed/NCBI
|
7
|
Levine B and Kroemer G: Biological
functions of autophagy genes: A disease perspective. Cell.
176:11–42. 2019. View Article : Google Scholar : PubMed/NCBI
|
8
|
He C and Klionsky DJ: Regulation
mechanisms and signaling pathways of autophagy. Annu Rev Genet.
43:67–93. 2009. View Article : Google Scholar : PubMed/NCBI
|
9
|
Jain V, Singh MP and Amaravadi RK:
Amaravadi, Recent advances in targeting autophagy in cancer. Trends
Pharmacol Sci. 44:290–302. 2023. View Article : Google Scholar : PubMed/NCBI
|
10
|
Debnath J, Gammoh N and Ryan KM: Autophagy
and autophagy-related pathways in cancer. Nat Rev Mol Cell Biol.
24:560–575. 2023. View Article : Google Scholar : PubMed/NCBI
|
11
|
Gundamaraju R, Lu W, Paul MK, Jha NK,
Gupta PK, Ojha S, Chattopadhyay I, Rao PV and Ghavami S: Autophagy
and EMT in cancer and metastasis: Who controls whom? Biochim
Biophys Acta Mol Basis Dis. 1868:1664312022. View Article : Google Scholar : PubMed/NCBI
|
12
|
Si L and Yang Z: Regulatory effects of
lncRNAs and miRNAs on the crosstalk between autophagy and EMT in
cancer: A new era for cancer treatment. J Cancer Res Clin Oncol.
148:547–564. 2022. View Article : Google Scholar : PubMed/NCBI
|
13
|
Babaei G, Aziz SG and Jaghi NZZ: EMT,
cancer stem cells and autophagy; The three main axes of metastasis.
Biomed Pharmacother. 133:1109092021. View Article : Google Scholar : PubMed/NCBI
|
14
|
Akalay I, Janji B, Hasmim M, Noman MZ,
Thiery JP, Mami-Chouaib F and Chouaib S: EMT impairs breast
carcinoma cell susceptibility to CTL-mediated lysis through
autophagy induction. Autophagy. 9:1104–1106. 2013. View Article : Google Scholar : PubMed/NCBI
|
15
|
Li Z, Lu C, Wang F, Guo H, Wang Z, Yin H
and Li J: Heat treatment-induced autophagy promotes breast cancer
cell invasion and metastasis via TGF-β2-mediated
epithelial-mesenchymal transitions. PeerJ. 11:e146402023.
View Article : Google Scholar : PubMed/NCBI
|
16
|
Marshall C, Blackburn E, Clark M,
Humphreys S and Gullick WJ: Neuregulins 1–4 are expressed in the
cytoplasm or nuclei of ductal carcinoma (in situ) of the human
breast. Breast Cancer Res Treat. 96:163–168. 2006. View Article : Google Scholar : PubMed/NCBI
|
17
|
Karthaus WR and Hofree M: Regenerative
potential of prostate luminal cells revealed by single-cell
analysis. Science. 368:497–505. 2020. View Article : Google Scholar : PubMed/NCBI
|
18
|
Trombetta D, Sparaneo A, Fabrizio FP, Di
Micco CM, Rossi A and Muscarella LA: NRG1 and NRG2 fusions in
non-small cell lung cancer (NSCLC): Seven years between lights and
shadows. Expert Opin Ther Targets. 25:865–875. 2021. View Article : Google Scholar : PubMed/NCBI
|
19
|
Yarden Y and Sliwkowski MX: Untangling the
ErbB signalling network. Nat Rev Mol Cell Biol. 2:127–137. 2001.
View Article : Google Scholar : PubMed/NCBI
|
20
|
Zhao WJ, Yi SJ, Ou GY and Qiao XY:
Neuregulin 2 (NRG2) is expressed in gliomas and promotes migration
of human glioma cells. Folia Neuropathol. 59:189–197. 2021.
View Article : Google Scholar : PubMed/NCBI
|
21
|
Li F, Shang Y, Zhang H, She J, Wang G and
Sun Q: Development of a novel autophagy-related gene prognostic
signature for gastric cancer. Transl Cancer Res. 10:2790–2800.
2021. View Article : Google Scholar : PubMed/NCBI
|
22
|
Hu D, Jiang L, Luo S, Zhao X, Hu H, Zhao G
and Tang W: Development of an autophagy-related gene expression
signature for prognosis prediction in prostate cancer patients. J
Transl Med. 18:1602020. View Article : Google Scholar : PubMed/NCBI
|
23
|
Sepulveda JL: Using R and bioconductor in
clinical genomics and transcriptomics. J Mol Diagn. 22:3–20. 2020.
View Article : Google Scholar : PubMed/NCBI
|
24
|
Shannon P, Markiel A, Ozier O, Baliga NS,
Wang JT, Ramage D, Amin N, Schwikowski B and Ideker T: Cytoscape: A
software environment for integrated models of biomolecular
interaction networks. Genome Res. 13:2498–2504. 2003. View Article : Google Scholar : PubMed/NCBI
|
25
|
Chin CH, Chen SH, Wu HH, Ho CW, Ko MT and
Lin CY: cytoHubba: Identifying hub objects and sub-networks from
complex interactome. BMC Syst Biol. 8 (Suppl 4):S112014. View Article : Google Scholar : PubMed/NCBI
|
26
|
Muggerud AA, Hallett M, Johnsen H, Kleivi
K, Zhou W, Tahmasebpoor S, Amini RM, Botling J, Børresen-Dale AL,
Sørlie T and Wärnberg F: Molecular diversity in ductal carcinoma in
situ (DCIS) and early invasive breast cancer. Mol Oncol. 4:357–368.
2010. View Article : Google Scholar : PubMed/NCBI
|
27
|
Gruosso T, Mieulet V, Cardon M, Bourachot
B, Kieffer Y, Devun F, Dubois T, Dutreix M, Vincent-Salomon A,
Miller KM and Mechta-Grigoriou F: Chronic oxidative stress promotes
H2AX protein degradation and enhances chemosensitivity in breast
cancer patients. EMBO Mol Med. 8:527–549. 2016. View Article : Google Scholar : PubMed/NCBI
|
28
|
Vasaikar SV, Straub P, Wang J and Zhang B:
LinkedOmics: Analyzing multi-omics data within and across 32 cancer
types. Nucleic Acids Res. 46:D956–D963. 2018. View Article : Google Scholar : PubMed/NCBI
|
29
|
Wu T, Hu E, Xu S, Chen M, Guo P, Dai Z,
Feng T, Zhou L, Tang W, Zhan L, et al: clusterProfiler 4.0: A
universal enrichment tool for interpreting omics data. Innovation
(Camb). 2:1001412021.PubMed/NCBI
|
30
|
Walter W, Sánchez-Cabo F and Ricote M:
GOplot: An R package for visually combining expression data with
functional analysis. Bioinformatics. 31:2912–2914. 2015. View Article : Google Scholar : PubMed/NCBI
|
31
|
Bindea G, Mlecnik B, Tosolini M,
Kirilovsky A, Waldner M, Obenauf AC, Angell H, Fredriksen T,
Lafontaine L, Berger A, et al: Spatiotemporal dynamics of
intratumoral immune cells reveal the immune landscape in human
cancer. Immunity. 39:782–795. 2013. View Article : Google Scholar : PubMed/NCBI
|
32
|
Hänzelmann S, Castelo R and Guinney J:
GSVA: Gene set variation analysis for microarray and RNA-seq data.
BMC Bioinformatics. 14:72013. View Article : Google Scholar : PubMed/NCBI
|
33
|
Ru B, Wong CN, Tong Y, Zhong JY, Zhong
SSW, Wu WC, Chu KC, Wong CY, Lau CY, Chen I, et al: TISIDB: An
integrated repository portal for tumor-immune system interactions.
Bioinformatics. 35:4200–4202. 2019. View Article : Google Scholar : PubMed/NCBI
|
34
|
Livak KJ and Schmittgen TD: Analysis of
relative gene expression data using real-time quantitative PCR and
the 2(−Delta Delta C(T)) method. Methods. 25:402–408. 2001.
View Article : Google Scholar : PubMed/NCBI
|
35
|
Niklaus NJ, Tokarchuk I, Zbinden M,
Schläfli AM, Maycotte P and Tschan MP: The multifaceted functions
of autophagy in breast cancer development and treatment. Cells.
10:14472021. View Article : Google Scholar : PubMed/NCBI
|
36
|
Jin L, Chen Y, Cheng D, He Z, Shi X, Du B,
Xi X, Gao Y and Guo Y: YAP inhibits autophagy and promotes
progression of colorectal cancer via upregulating Bcl-2 expression.
Cell Death Dis. 12:4572021. View Article : Google Scholar : PubMed/NCBI
|
37
|
Liu X, Ma B, Chen M, Zhang Y, Ma Z and
Chen H: Prognostic Autophagy-Related genes of gastric cancer
patients on chemotherapy. Front Genet. 12:7208492021. View Article : Google Scholar : PubMed/NCBI
|
38
|
Ding J, Wang C, Sun Y, Guo J, Liu S and
Cheng Z: Identification of an Autophagy-Related signature for
prognosis and immunotherapy response prediction in ovarian cancer.
Biomolecules. 13:3392023. View Article : Google Scholar : PubMed/NCBI
|
39
|
Poe JC, Fujimoto Y, Hasegawa M, Haas KM,
Miller AS, Sanford IG, Bock CB, Fujimoto M and Tedder TF: CD22
regulates B lymphocyte function in vivo through both
ligand-dependent and ligand-independent mechanisms. Nat Immunol.
5:1078–1087. 2004. View
Article : Google Scholar : PubMed/NCBI
|
40
|
Harwood NE and Batista FD: Early events in
B cell activation. Annu Rev Immunol. 28:185–210. 2010. View Article : Google Scholar : PubMed/NCBI
|
41
|
Zhou C, Gao Y, Ding P, Wu T and Ji G: The
role of CXCL family members in different diseases. Cell Death
Discov. 9:2122023. View Article : Google Scholar : PubMed/NCBI
|
42
|
Gonçalves PR, Rocha-Brito KJ, Fernandes
MR, Abrantes JL, Durán N and Ferreira-Halder CV: Violacein induces
death of RAS-mutated metastatic melanoma by impairing autophagy
process. Tumour Biol. 37:14049–14058. 2016. View Article : Google Scholar : PubMed/NCBI
|
43
|
Su H, Yang F, Fu R, Li X, French R, Mose
E, Pu X, Trinh B, Kumar A, Liu J, et al: Cancer cells escape
autophagy inhibition via NRF2-induced macropinocytosis. Cancer
Cell. 39:678–693.e11. 2021. View Article : Google Scholar : PubMed/NCBI
|
44
|
Lee JJ and Jain V: Clinical translation of
combined MAPK and autophagy inhibition in RAS mutant cancer. Int J
Mol Sci. 22:124022021. View Article : Google Scholar : PubMed/NCBI
|
45
|
Malla RR and Kiran P: Tumor
microenvironment pathways: Cross regulation in breast cancer
metastasis. Genes Dis. 9:310–324. 2022. View Article : Google Scholar : PubMed/NCBI
|
46
|
Gonzalez DM and Medici D: Signaling
mechanisms of the epithelial-mesenchymal transition. Sci Signal.
7:re82014. View Article : Google Scholar : PubMed/NCBI
|
47
|
Mirzaei S, Saghari S, Bassiri F, Raesi R,
Zarrabi A, Hushmandi K, Sethi G and Tergaonkar V: NF-κB as a
regulator of cancer metastasis and therapy response: A focus on
epithelial-mesenchymal transition. J Cell Physiol. 237:2770–2795.
2022. View Article : Google Scholar : PubMed/NCBI
|
48
|
Copetti T, Bertoli C, Dalla E, Demarchi F
and Schneider C: p65/RelA modulates BECN1 transcription and
autophagy. Mol Cell Biol. 29:2594–2608. 2009. View Article : Google Scholar : PubMed/NCBI
|
49
|
Xu K, Chen W, Wang X, Peng Y, Liang A,
Huang D, Li C and Ye W: Autophagy attenuates the catabolic effect
during inflammatory conditions in nucleus pulposus cells, as
sustained by NF-κB and JNK inhibition. Int J Mol Med. 36:661–668.
2015. View Article : Google Scholar : PubMed/NCBI
|