Decreased microRNA‑140‑5p contributes to respiratory syncytial virus disease through targeting Toll‑like receptor 4
- Authors:
- Published online on: June 8, 2018 https://doi.org/10.3892/etm.2018.6272
- Pages: 993-999
Abstract
Introduction
The mammalian Toll-like receptors (TLRs) serve key roles in innate immunity and can react to different microbes, including gram-positive and -negative bacteria, mycobacteria and fungi (1–3). TLR2 was previously revealed to transduce signals from gram-positive bacteria and fungi (3–5), while TLR4 responded to bacterial lipopolysaccharide (LPS) (6). In addition, TLR4 was previously revealed to be a key regulator of the innate immune response following respiratory syncytial virus (RSV) infection (7,8).
During winter epidemics the prevalence of RSV is higher than any other virus and RSV-associated infections are a common reason for hospitalization worldwide (9,10). It has also been identified that RSV infections may develop into illnesses as mild as common colds to illnesses as serious as severe lower respiratory tract infections, and the transition between the mild and severe disease only requires h (11,12). Thus, it is important for clinicians to effectively screen patients with an RSV infection.
MicroRNAs (miRs) are small non-coding RNA sequences that suppress the translation of mRNA through the incomplete base pairing mechanism (13,14). Previous studies have demonstrated that miRs are widely involved in the innate and adaptive immune systems (15,16). For instance, miR-221 was demonstrated to regulate RSV replication in the human bronchial epithelium through suppressing β-nerve growth factor expression (16). The primary focus of the present study was miR-140-5p, which was reported to be differentially expressed in numerous tumor types, including breast cancer, gastric cancer, biliary tract cancer (13,14,17). However, to the best of our knowledge, the specific role of miR-140-5p in RSV infections has never been explored.
In the current study, the level of miR-140-5p was identified to be reduced in the nasopharyngeal airway (NPA) and peripheral blood samples of patients with an RSV infection compared with normal controls. Additional study revealed that TLR4 was a target gene of miR-140-5p, suggesting a potential therapeutic target in the treatment of patients with RSV infection.
Materials and methods
Study design
The heparinized blood and NPA samples were collected from patients with a bronchiole RSV infection, causing bronchiolitis, within 24 h of first contact with the hospital (6.8±3.9 years, n=104; 45% male), and from healthy controls (6.5±4.1 years, n=40; 55% male) during their annual physical examination, at Taizhou People's Hospital (Taizhou, China), between December 2015 and May 2016. The exclusion criteria were as previously described, including corticosteroid use 48 h prior to recruitment, serious congenital heart or lung disease and immunodeficiency, and the presence of ≥15 viral pathogens (18). Based on the severity of the RSV infection, the patients were divided into three groups. The mild group consisted of those who were without hypoxia or severe feeding problems (n=42). The moderate group consisted of those who required hospitalization to receive supplemental oxygen (oxygen saturation, <93%) and/or nasogastric feeding (n=34). The severe group consisted of those who required mechanical ventilation (n=28). Written informed consent was obtained from the parents of all children. Human studies were approved by the Taizhou People's Hospital Ethics Committee.
NPA samples for miRNA analysis
NPA samples were separated from nostrils by deep nasal suctioning. An RSV infection was determined using a rapid antigen test (Alere™ BinaxNOW® RSV Card; Alere, Inc., Waltham, MA, USA) according to the manufacturer's protocol and in-house reverse transcription-quantitative polymerase chain reaction (RT-qPCR) analysis.
Total RNA was isolated with RNAzol LS (Vigorous Biotechnology, Beijing, China) according to the specific instructions to isolate small RNAs. Quality, quantity and integrity of RNA were monitored using a NanoDrop spectrophotometer (ND-1,000, Nanodrop Technologies; Thermo Fisher Scientific, Inc., Waltham, MA, USA). The commercially available TaqMan® Fast Virus 1-Step Master mix (cat no. 4444432; Thermo Fisher Scientific, Inc.) was used to detect RSV. In brief, 5 µl extracted nucleic acids was added in a reaction tube containing 5 µl primer probe mixture and 10 µl TaqMan® Fast Virus 1-Step Master mix in order to perform cDNA synthesis and qPCR. Subsequently, the PCR amplification was performed using 1 mg of cDNA and SYBR Green Master mix (Roche Diagnostics, Basel, Switzerland) on a Roche Lightcycler 480 (Roche Diagnostics). For qPCR, the mixture was incubated at 50°C for 10 min. Denaturation followed at 95°C for 30 sec, then 10 cycles of PCR (15 sec at 95°C, 30 sec at 53°C and 30 sec at 60°C) and 30 additional cycles of PCR for the detection of fluorescence signals (15 sec at 95°C, 30 sec at 53°C and 30 sec at 60°C). Relative expression was normalized against the endogenous control, GAPDH, using the 2−∆∆Ct method (19). The primers used were as follows: RSV-A subtype-F: AGATCAACTTCTGTCATCCAGCAA; RSV-A-subtype-R: TTCTGCACATCATAATTAGGAG; RSV-B-subtype-F: AAGATGCAAATCATAAATTCACAGGA; RSV-B-subtype-R: TGATATCCAGCATCTTTAAGTA; GAPDH-F: GAGAAGGCTGGGGCTCATTT; GAPDH-R: AGTGATGGCATGGACTGTGG.
Then, the respiratory secretions, including phlegm and mucus, were removed from NPA samples by tracheal suction, and nasal epithelial cells were collected from each nostril by rotating a cytology brush (Ningbo Finer Medical Instruments Co., Ltd., Ningbo, China) over the anterior nasal mucosa. Following that, the brushes were immersed in the RNA stabilization reagent, RNAlater® (Sigma-Aldrich; Merck KGaA, Darmstadt, Germany). Epithelial cells were detached from the cytology brushes by placing the brush in a 15 ml conical tube containing 8 ml of DMEM (Hyclone; GE Healthcare Life Sciences, Logan, UT, USA) and transported on ice. The tube was then centrifuged at 4°C at 400 × g for 5 min and the supernatant was removed. Then, cells were stored at −80°C in RNAlater for miRNA analysis.
ELISA
To evaluate the role of miR-140-5p in pro-inflammatory responses, miR-140-5p mimics or inhibitors were transfected into BEAS-2B cells for 48 h in the presence of 10 µg/ml LPS and the supernatant was collected for ELISA assay. In addition, BEAS-2B cells were also incubated with 0.1, 0.5 or 1.0 µg/ml IFNα (Sigma-Aldrich; Merck Millipore, Darmstadt, Germany) for 48 h and the supernatant was collected for further assay. Dimethyl sulfoxide (DMSO) was used as a control for IFNα. BEAS-2B cells were treated in a lysis buffer (50 mmol/l Tris-HCl, 300 mmol/l NaCl, 5 mmol/l EDTA, 1% Triton X-100, 0.02% sodium azide) containing a protease inhibitor cocktail (Roche, Mannheim, Germany). The lysates were centrifuged at 16,000 × g for 15 min at 4°C and supernatants were used to quantify the levels of TNF-α (cat no. DTA00C; Human TNF-α Quantikine ELISA kit), IL-6, (cat no. D6050; Human IL-6 Quantikine ELISA kit), IL-1β (cat no. DLB50; Human IL-1 beta/IL-1F2 Quantikine ELISA kit), and IL-8 (cat no. D8000C; Human IL-8/CXCL8 Quantikine ELISA kit) by way of a sandwich ELISA following the manufacturers' protocols (R&D Systems, Minneapolis, Minnesota, USA). Samples were read at a 450 nm wavelength using a microplate reader (Model 3550; Thermo Fisher Scientific, Inc.).
Cell culture
Human bronchial epithelial cells, BEAS-2B were purchased from the American Type Culture Collection (Manassas, VA, USA) and cultured in Dulbecco's modified Eagle's medium (DMEM) (Hyclone; GE Healthcare Life Sciences) supplemented with 10% (v/v) horse serum (Hyclone; GE Healthcare Life Sciences), 100 U/ml penicillin (Invitrogen; Thermo Fisher Scientific, Inc.) and 0.1 mg/ml streptomycin (Hyclone; GE Healthcare Life Sciences) at 37°C in a humidified atmosphere with 5% CO2.
RNA extraction
Total RNA (10 µg) from the whole blood samples (5 ml), in tubes containing EDTA, or BEAS-2B cells was isolated using RNAVzol LS (Vigorous Biotechnology Beijing Co., Ltd., Beijing, China) in accordance with the manufacturer's protocol. The concentration and purity of the RNA samples were determined by the OD260/OD280 ratio using a microplate reader (Model 3550; Thermo Fisher Scientific, Inc.).
RT-qPCR analysis
For synthesis of cDNA of the specific miR, 1 µg of the total RNA was reverse transcribed using TaqMan™ MicroRNA Reverse Transcription kit (Applied Biosystems; Thermo Fisher Scientific, Inc.) with specific primers for miR-140-5p and U6 (Shanghai Sangon Technology Co., Ltd., Shanghai, China). To quantify the miR-140-5p, a qPCR assay was performed using iQ™ SYBR® Green Supermix (Bio-Rad Laboratories, Inc., Hercules, CA, USA) in an iCycler iQ™ qPCR detection system (both Bio-Rad Laboratories, Inc). The PCR amplifications were performed in a 10 µl reaction system containing 5 µl SYBR-Green Supermix, 0.4 µl forward primer, 0.4 µl reverse primer, 2.2 µl double distilled H2O and 2 µl template cDNA. The thermal cycling conditions were as follows: A hot start step at 95°C for 10 min, followed by 40 cycles of 95°C for 15 sec and 60°C for 1 min, annealing at 55°C for 30 sec and elongation at 72°C for 3 min. The relative level of miR-140-5p was determined using the 2−ΔΔCq analysis method (19). U6 was selected as the internal control. The primers used in the present study were as follows: miR-140-5p-RT, 5′-GTCGTATCCAGTGCAGGGTCCGAGGTATTCGCACTGGATACGACCTACCA-3′; U6-RT, 5′-GTCGTATCCAGTGCAGGGTCCGAGGTATTCGCACTGGATACGACAAAATG-3′ miR-140-5p, forward, 5′-GCGCGCAGUGGUUUUACCCUA-3′; U6, forward, 5′-GCGCGTCGTGAAGCGTTC-3′; universal reverse primer, 5′-GTGCAGGGTCCGAGGT-3′. RT stands for stem loop primer here.
Transient transfection
Firstly, 6×105 cells were equally seeded in the 6-well plates with 2 ml DMEM culture medium containing serum and antibiotics. miR-140-5p mimics, inhibitors or miR negative controls were purchased from GenePharma (Shanghai, China). Simultaneously, miR-140-5p mimics, inhibitors or miR negative controls were mixed with HiperFect transfection reagent (Qiagen GmbH, Hilden, Germany) and incubated at room temperature for 10 min. Then, each complex was transfected into two wells containing the BEAS-2B cells for 48 h at a final concentration of 10 nM. The specific sequences were as follows: miR-140-5p mimic, CAGUGGUUUUACCCUAUGGUAG; miR-140-5p inhibitor: CUACCAUAGGGUAAAACCACUG; miR NC for mimic: UUCUCCGAACGUGUCAACGUTT; miR NC for inhibitor: CAGUACUUUGUGUAGUACAA.
Bioinformatics analysis
TargetScan 7.1 (www.targetscan.org/vert_71/) was applied to predict the possible target genes of miR-140-5p.
Dual luciferase reporter assay
The 3untranslated region (UTR) of TLR4, which contains the predicted target site for miR-140-5p, was cloned into the pmirGLO luciferase reporter vector (Promega Corporation, Madison, WI, USA), which was cleaved at SacI and XhoI sites. The two different 3UTR regions containing the potential binding sites of TLR4 were cloned into the luciferase reporter system, which were designated pmirGLO-TLR4-3UTR-1 and pmirGLO-TLR4-3UTR-2. The former contained the first binding site, while the latter included the second and the third binding sites. Details of PCR procedures are described as follows: A hot start step at 95°C for 10 min, followed by 40 cycles of 95°C for 15 sec, 55°C for 45 sec and 72°C for 30 sec.
Prior to conducting the dual reporter assay, 5×104 BEAS-2B cells/well were seeded in 24-well plates with 500 µl DMEM medium and cultured for 18 h. The cells were transfected with the modified firefly luciferase reporter vector (500 ng/µl) mixed with Vigofect transfection reagent (Vigorous, Beijing, China) according to the manufacturer's protocol. After continuous exposure of miR-140-5p (CAGUGGUUUUACCCUAUGGUAG)/pmirGLO-TLR4-3′UTR-1 or pmirGLO-TLR4-3′UTR-2 or NC (UUCUCCGAACGUGUCAACGUTT)/pmirGLO blank vector for 48 h, the luciferase activities of firefly and Renilla were measured with the Dual-Luciferase® Reporter Assay system (Promega Corporation) according to the manufacturer's protocol. Firefly luciferase activity was normalized to Renilla luciferase activity.
Western blotting
Cell protein was extracted using radioimmunoprecipitation lysis buffer (Beijing Solarbio Science & Technology Co., Ltd., Beijing, China) and was collected following centrifugation at 12,000 × g for 30 min at 4°C. A bicinchoninic protein assay kit (Pierce; Thermo Fisher Scientific, Inc.) was used to determine the protein concentration. A total of 15 µg protein was loaded per lane, separated by 10% SDS-PAGE and transferred to polyvinylidene difluoride membranes. The membranes were blocked with 8% non-fat dry milk at 4°C overnight. Following three washes with PBS with Tween 20 (5 min/wash), the membranes were incubated with the following primary antibodies at 4°C overnight: TLR4 (cat no. 14358; 1:1,000; Cell Signaling Technology, Inc., Danvers, MA, USA) and GAPDH (cat. no. 5174; 1:1,000; Cell Signaling Technology, Inc.). Following several washes with TBST, the membranes were incubated with horseradish-peroxidase (HRP)-conjugated goat anti-rabbit and anti-mouse Immunoglobulin G (IgG) or HRP-conjugated mouse anti-goat IgG (all 1:5,000; Zhongshan Gold Bridge Biological Technology Co., Beijing, China) for 2 h at room temperature and then washed. The blots were then incubated with horseradish peroxidase (HRP)-conjugated anti-IgG secondary antibody (1:5,000; OriGene Technologies, Inc., Beijing, China) for 2 h at room temperature and then washed followed by detection with enhanced chemiluminescent substrate (EMD Millipore, Billerica, MA, USA). GAPDH was used as an internal control. ImageJ software (National Institutes of Health, Bethesda, MD, USA) was used for density analysis.
Interferon-α (IFNα) treatment
In brief, BEAS-2B cells were seeded at a density of 5×105 cells/well in a 6-well plate for 24 h. Then, BEAS-2B cells were incubated with 0.1, 0.5 or 1.0 µg/ml Recombinant Human IFNα (CYT-283, ProSpec, Rehovot, Israel) or the corresponding volume of distilled water (control) for 48 h. Then, the RNA was isolated and the level of miR-140-5p was quantified using RT-qPCR according to the aforementioned method. The primers used were as follows: MiR-140-5p-Stem: GTCGTATCCAGTGCAGGGTCCGAGGTATTCGCACTGGATACGACCTACCA; U6-Stem: GTCGTATCCAGTGCAGGGTCCGAGGTATTCGCACTGGATACGACAAATATG; miR-140-5p-F: GCCAGTGGTTTTACCCTAT; U6-F: GCGCGTCGTGAAGCGTTC; universal reverse: GTGCAGGGTCCGAGGT.
Statistical analysis
Data are presented as mean ± standard deviation. To compare two groups, the two-tailed unpaired Student's t test was performed. For multiple groups comparisons, one-way analysis of variance followed by Tukey's post hoc test was used. Statistical tests were performed using SPSS software (version 13.0; SPSS, Inc., Chicago, IL, USA). P<0.05 was considered to indicate a statistically significant difference.
Results
miR-140-5p levels decrease in the NPAs and peripheral blood of patients with an RSV infection
The clinical characteristics of patients with an RSV infection are demonstrated in Table I. To determine the level of miR-140-5p in the NPA samples, the RNA was extracted from the patients with RSV infections and the healthy controls. Compared with that of the healthy controls, miR-140-5p expression was significantly lower in patients with RSV infections (Fig. 1A). The lowest miR-140-5p level in the NPA samples was exhibited by patients with severe RSV infections, followed by patients with moderate and mild infections, which were significantly lower compared with the controls. Furthermore, the level of miR-140-5p in the peripheral blood samples of patients with RSV infections and healthy control was analyzed. Compared with the healthy controls, the level of miR-140-5p was significantly decreased in patients with RSV infections, with the biggest decrease in severe RSV, followed by the moderate and mild disease subgroups (Fig. 1B).
Table I.Clinicopathological characteristics of controls and patients with RSV included in the reverse transcription-quantitative polymerase chain reaction analysis. |
Decreased miR-140-5p expression levels induce pro-inflammatory responses
The overexpression of miR-140-5p significantly decreased the levels of pro-inflammatory factors, tumor necrosis factor (TNF)α (Fig. 2A), interleukin (IL)-1β (Fig. 2B), IL-6 (Fig. 2C) and IL-8 (Fig. 2D). By contrast, inhibition of miR-140-5p significantly enhanced the production of TNFα (Fig. 2E), IL-1β (Fig. 2F), IL-6 (Fig. 2G) and IL-8 (Fig. 2H).
TLR4 may be a direct target of miR-140-5p
The mechanism underlying the involvement of miR-140-5p in RSV infections was explored. Bioinformatic analysis (targetscan.org/vert_71/) demonstrated that one conserved and two poorly conserved (binding site 1 was conserved, while binding site 2 and 3 were poorly conserved) binding sites were identified in the 3UTR of TLR4 (Fig. 3A). The dual luciferase reporter assay demonstrated that miR-140-5p significantly suppressed the relative luciferase activity of pmirGLO-TLR4-3UTR-1 and pmirGLO-TLR4-3UTR-2 (Fig. 3B), suggesting that TLR4 is a direct target gene of miR-140-5p. In addition, the overexpression of miR-140-5p significantly suppressed the protein level of TLR4 in BEAS-2B cells (Fig. 3C), while inhibition of miR-140-5p significantly enhanced the expression of TLR4 in BEAS-2B cells (Fig. 3D).
IFNα treatment increases the level of miR-140-5p
BEAS-2B cells were incubated with 0.1, 0.5 or 1.0 µg/ml IFNα for 48 h and the level of miR-140-5p was demonstrated to increase in a dose-dependent manner following IFNα incubation (Fig. 4A). miR-140-5p levels significantly increased with 0.5 and 1.0 µg/ml IFNα compared with the control. In addition, the supernatant of the BEAS-2B cells incubated with IFNα was collected for ELISA assay. Following the incubation of 1.0 µg/ml IFNα, the production of TNFα (Fig. 4B), IL-1β (Fig. 4C), IL-6 (Fig. 4D) and IL-8 (Fig. 4E) in BEAS-2B cells was significantly suppressed compared with the controls. By contrast, inhibition of miR-140-5p significantly attenuated the IFNα-mediated downregulation of TNFα, IL-1β, IL-6 and IL-8 in BEAS-2B cells compared with the IFNα-treated cells (Fig. 4B-E).
Discussion
The abnormal expression of miRNAs in different diseases has been widely reported (15,16,20). For instance, studies have demonstrated that miR-221, let-7i and miR-30b regulate RSV replication in the human bronchial epithelium (16,21). In the current study, the expression of miR-140-5p in the NPA and whole peripheral blood samples of patients with acute RSV disease was explored. Compared with the healthy controls, miR-140-5p was lowest in the NPA samples and peripheral blood of patients with a severe RSV infection, followed by patients with moderate and mild RSV infections. These in vivo results indicated that miR-140-5p may function as a potential biomarker for RSV infections and that there is a negative association between miR-140-5p levels and the severity of RSV infections. Notably, the overexpression and inhibition of miR-140-5p decreased and increased the levels of inflammation factors, respectively. The in vitro results from the present study revealed the anti-inflammatory effects of miR-140-5p, suggesting that inhibition of miR-140-5p contributes to inflammatory responses and that it may possibly serve a protective role in preventing RSV infections.
An RSV infection primarily affects the epithelial cells of the respiratory mucosa (22). By binding to TLR4, RSV triggers the abnormal activation of the nuclear factor-κB signaling pathway (23,24). Thus far, the regulation of TLR4 following RSV infection remains unknown. The present study demonstrates that TLR4 may be a target gene of miR-140-5p. In vitro investigations revealed that decreased miR-140-5p levels in the NPA samples contributed to the immune response to RSV, this may primarily be due to the targeting of TLR4 by miR-140-5p.
Upon RSV infection, type I IFNs are secreted through the IFNα/β receptor to stimulate the expression of key proteins that modulate the process of viral replication and immune responses (25,26). Then, IFNs trigger cell intrinsic antiviral responses, stimulate natural killer cells, macrophages and dendritic cells, and modulate the innate and adaptive immune responses (25,27). IFNα/β expression is induced in bronchial epithelial cells following the infection of various viruses, including the influenza virus, RSV and human metapneumovirus (26,28,29). To investigate whether miR-140-5p was involved in IFNα-mediated antiviral therapy in the airways, the expression of miR-140-5p in BEAS-2B cells treated with IFNα was investigated. It was demonstrated that treatment with 0.5 or 1.0 µg/ml IFNα significantly increased miR-140-5p levels in BEAS-2B cells. Notably, the suppression of miR-140-5p significantly attenuated the IFNα-mediated downregulation of TNFα, IL-1β, IL-6 and IL-8 in BEAS-2B cells. These data suggest that miR-140-5p is involved in INFα-mediated anti-RSV infection therapy.
In conclusion, the current study demonstrated that miR-140-5p was reduced in the NPA and peripheral blood samples of patients with RSV infections compared with that of the healthy controls. Also, inhibiting miR-140-5p enhanced the pro-inflammatory responses, primarily by targeting TLR4. IFNα treatment was demonstrated to enhance the level of miR-140-5p in BEAS-2B cells. Thus, miR-140-5p may be a potential therapeutic target in patients with RSV infection.
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