Mechanism underlying circularRNA_014301‑mediated regulation of neuronal cell inflammation and apoptosis
- Authors:
- Published online on: October 11, 2021 https://doi.org/10.3892/etm.2021.10867
- Article Number: 1432
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Copyright: © Xie et al. This is an open access article distributed under the terms of Creative Commons Attribution License.
Abstract
Introduction
Spinal cord injury (SCI) is a serious neurological disorder that involves damage to the spinal cord caused by trauma or disease and its most typical manifestation is paralysis at the injured site (1). SCI not only causes physical and psychological trauma for patients, but is also associated with an important economic burden for the entire society (2,3). The annual SCI incidence worldwide is 15-40 cases per million people (2), and the treatment of patients with SCI is currently limited (4). Several factors can cause SCI, including oxygen-free radicals, inflammation, ion disturbances, neurotransmitter accumulation, excitatory amino acid accumulation, axon loss, glial scar formation and apoptosis (5-10). Therefore, there is an urgent requirement for novel effective treatment methods for SCI.
Initial stage SCI involves a series of vascular, biochemical and cellular events, and it is the most complicated and the least understood stage of SCI (11,12). The vascular alterations that occur during this stage lead to serious complications, including oxidative stress, blood flow reduction, edema, tissue disorders, depolarization, metabolic dysfunction, loss of cell function, tissue dissolution and neuronal cell death (13,14). Subsequent cellular changes include increases in the numbers of macrophages and neutrophils, apoptosis, Wallerian degeneration and severe inflammatory response (15,16). This secondary SCI is a delayed progressive tissue injury after the initial injury (17,18), during which inflammatory cells such as macrophages, microglia, T cells and neutrophils cross the blood-brain barrier and enter the injured area. These cells expand and release inflammatory factors, such as TNF-α and IL-1β, whose levels peak at 6-12 h and continue to increase within 4 days after injury.
Biochemical and cellular alterations in the local environment that occur after SCI gradually affect the neurons, oligodendrocytes and astrocytes (19). For example, the center and areas distal to the site of injury contain oligodendrocytes undergoing apoptosis. Apoptosis leads to demyelination of the axons of the preserved oligodendrocytes. Moreover, the phagocytic inflammatory cells attracted to the injured area release reactive oxygen species, thereby causing a number of reactions, such as DNA oxidative damage, protein oxidation and lipid peroxidation (19).
More than three quarters of the human genome are transcribed, but <2% of the RNA is translated into proteins (20). RNAs that are not translated into proteins but exhibit other cellular functions are called non-coding RNAs (ncRNAs) (21). In the past two decades, different types of ncRNAs have been discovered alongside rRNAs and tRNAs, including microRNAs (miRNAs/miRs), long non-coding RNAs (lncRNAs) and circular RNAs (circRNAs) (22). Whereas miRNAs and lncRNAs are linear, circRNAs are characterized by a covalently closed continuous loop without the 5' cap and 3' poly(A) tail (22). In contrast to lncRNAs, circRNAs are usually derived from protein-coding genes and complete exons (23). Various types of circRNAs exist according to their biogenesis, as follows: circRNAs formed by reverse splicing and exon circularization, circovirus RNA genomes, circRNA intermediates, intronic circRNAs and exonic circRNAs (24). Due to the lack of free ends, circRNAs are resistant to exonucleases; moreover, they exhibit the potential for rolling circle amplification (25).
Research on the role of circRNAs in nerve damage has rapidly evolved. Numerous studies have revealed the expression pattern of circRNAs in traumatic brain injury and neuropathic pain models through DNA microarrays and RNA-sequencing (26,27). For instance, circRNA_0006928 may regulate neuronal apoptosis by binding to miR-184(26). In chronic inflammatory pain, circRNA-Filip1l, which is negatively regulated by miR-1224 through binding and splicing, increases chronic inflammatory pain and can regulate nociception by targeting ubiquitin protein ligase E3 component n-recognin 5(28). circRNA expression increased in the rat spinal cord after traumatic SCI, which indicated that there was a relationship between circRNA and SCI (29). In addition, differentially expressed circRNAs were identified in the rat sciatic nerve compression model, and downregulated circRNAs were revealed compared with control rats. Among them, circRNA_2837 was demonstrated to regulate neuronal autophagy by acting as a binding sponge for the miR-34 family (30). Furthermore, silencing circRNA_2837 can induce autophagy in primary spinal cord neurons by targeting miR-34a (30). Although these findings suggested that circRNAs exhibit regulatory functions in nerve injury, their precise role is still unknown.
A previous study using a rat SCI model revealed that a total of 150 circRNAs were significantly differentially expressed in the rat spinal cord after SCI (fold-change ≥2; P≤0.05). Of these, 99 circRNAs were upregulated, and 51 were downregulated (31). Among them, circRNA_014301 was highly expressed at the injury site and is therefore of interest (29,31). Although these studies revealed that circRNA_014301 was significantly induced following SCI in the rat model, whether it exhibits a specific regulatory function in SCI remains unknown (32). The present study aimed to analyze the effect of circRNA_014301 on the inflammation and apoptosis of PC12 cells to assess the possible regulatory role of circRNA_014301 in a cellular model of SCI and identify a potential therapeutic target for SCI.
Materials and methods
Cell culture and treatments
The rat adrenal pheochromocytoma cell line PC12 was obtained from The World Cell Factory (CyberKang (Shanghai) Biotechnology Co., Ltd.). The cells were maintained in a complete medium containing RPMI-1640 (Sigma-Aldrich; Merck KGaA) plus 2 mM glutamine, 1.5 g/l sodium bicarbonate, 4.5 g/l glucose, 10 mM HEPES and 1 mM sodium pyruvate, supplemented with 10% heat-inactivated horse serum (Invitrogen; Thermo Fisher Scientific, Inc.) and 5% FBS (Biological Industries), in a 5% CO2 incubator at 37˚C with no antibiotics. When cell confluence reached >90%, the cells were passaged at a ratio of 1:2 or 1:3 before use.
Different concentrations of lipopolysaccharide (LPS; 0, 1, 2.5, 5 and 10 µg/ml; Sigma-Aldrich; Merck KGaA) were used to treat PC12 cells for 24 h and to construct a PC12 cell inflammatory model (33-35).
The small interfering (si)RNA for circRNA_014301 (si-circRNA_014301; 5'-CAGACAGGAGCTACTCGGATA TGAT-3') and the si-negative control (si-NC; 5'-CATCTCCCA GCAGTGACACTGACTT-3') were purchased from Shanghai GenePharma Co., Ltd. Cell transfection was performed using Lipofectamine® 2000 (Thermo Fisher Scientific, Inc.), as per the manufacturer's instructions. PC12 cells were seeded into 6-well plates at 2x104 cells/well. Cells were transfected with 100 nM of siRNA. The culture plate was placed in a CO2 incubator at 37˚C for 12 h. Cells were subsequently stimulated with 5 µg/ml LPS for 24 h to construct an SCI inflammation model. After the intervention is over, cells are collected and tested. After transfection, RNA was extracted, and the silencing efficiency was determined via reverse transcription-quantitative (RT-q) PCR.
The experimental protocol was divided into four treatments: Control (normally cultured cells without LPS), LPS (5 µg/ml) treatment, si-circRNA_014301 + LPS treatment and si-NC + LPS treatment. Following transfection with si-circRNA_014301 or si-NC for 24 h, LPS treatment was performed for 24 h to establish the inflammatory model.
Total RNA extraction and purification
Total RNA was extracted from PC12 cells using the RNeasy Protect Mini kit (Qiagen, Inc.) following the manufacturer's manual. RNA concentration was quantified using NanoDrop ND-1000 spectrophotometer (NanoDrop Technologies; Thermo Fisher Scientific, Inc.), and its integrity was evaluated on an agarose gel. The RNA was then purified with RNase-Free DNase Set (Qiagen, Inc.) and digested for 30 min at 37˚C with RNase R (20 mg/ml; cat. no. RNR07250; Epicenter Biotechnologies; Lucigen Corporation) to remove linear RNA according to the manufacturer's instructions.
RNase R is known to degrade linear RNAs leaving circRNAs intact, and is used to validate the depletion of linear RNAs and the resistance of circRNAs to RNase R treatment (36). miRDB database (http://mirdb.org/) was utilized to predict miRNA-mRNA interactions.
Isolation of nuclear and cytoplasmic fractions
The nuclear and cytoplasmic fractions were isolated using a PARIS™ kit (Thermo Fisher Scientific, Inc.) according to the manufacturer's instructions. The expression of circRNA_014301 in the nuclear and cytoplasmic was tested via qPCR. U6 snRNA and 18S rRNA were employed as positive controls for nuclear and cytoplasmic fractions, respectively.
RT-qPCR
The purified, RNase R-digested RNA was reverse-transcribed to cDNA using PrimeScript RT reagent Kit (Takara Biotechnology Co., Ltd.) for 15 min at 37˚C. cDNA amplification was performed using SYBR® Green Realtime PCR Master Mix (Toyobo Life Science). The settings of the LightCycler 96 Real-Time PCR system (Roche Diagnostics) were as follows: 94˚C for 30 sec; followed by 40 cycles of 94˚C for 5 sec and 61˚C for 35 sec; followed by 97˚C for 10 sec, 65˚C for 1 min, and 97˚C for 1 sec. Each reaction included three replicates. GAPDH (forward, 5'-GCTCTC TGCTCCTCCCTGTTCTA-3'; and reverse, 5'-TGGTAACCA GGCGTCCGATA-3') and U6 (forward, 5'-AAAGCAAAT CATCGGACGACC-3'; and reverse, 5'-GTACAACACATT GTTTCCTCGGA-3') were used as the internal reference genes (37,38). The primer sequences of 18S RNA (forward, 5'-TGTGCCGCTAGAGGTGAAATT-3', and reverse 5'-TGG CAAATGCTTTCGCTTT-3') were based on Tao et al (39). The primer sequences of circRNA_014301 (forward, 5'-GCT GCTCTAGTGGTGACTCATG-3'; and reverse 5'-TTCTCC ATTCATCCAATCAACTTCG-3'), IL-1β (forward, 5'-GAC CTTCCAGGATGAGGACA-3'; and reverse 5'-AGCTCA TATGGGTCCGACAG-3'), IL-6 (forward, 5'-AGTTGCCTT CTTGGGACTGA-3'; and reverse 5'-CAGAATTGCCAT TGCACAAC-3') and TNF-α (forward, 5'-ACGGCATGGATC TCAAAGAC-3'; and reverse 5'-GTGGGTGAGGAGCAC GTAGT-3') were based on Gonzales et al (40). The primer sequences of MTY1L (forward, 5'-GTCATGGTGTGAGGG GTCCC-3', and reverse 5'-CACACTCTGTGATTCTTCAG-3') were based on Bruno et al (41). Gene expression was calculated using the 2-ΔΔCq method (31,42).
Cell viability assay
The viability of PC12 cells was measured using Cell Counting Kit-8 (CCK-8) assay (Beyotime). Briefly, LPS treatment after transfection was performed as aforementioned, and then the cells were seeded onto 96-well plates at 2x104 cells/well and incubated in a humidified incubator at 37˚C for 6 h. Subsequently, 10 µl of CCK-8 solution was added to each well, and the plate was incubated for 1 h at 37˚C. The absorbance of each well at 450 nm was recorded using a microplate reader (BioTek Instruments, Inc.). The higher the OD 450 value, the faster the cell proliferation.
ELISA
The contents of IL-1β (cat. no. RLB00), IL-6 (cat. no. R6000B) and TNF-α (cat. no. RTA00) in the PC12 cells were measured using corresponding Quantikine ELISA kits (R&D Systems, Inc.) according to the manufacturer's instructions. Each experiment was performed in three biological replicates.
Flow cytometry analysis of apoptosis
PC12 cells in the various groups were harvested and centrifuged at room temperature at 10,000 x g for 5 min, followed by treatment with Annexin V-FITC binding buffer and 1 mg/ml of PI solution (cat. no. G003-1-2; Nanjing Jiancheng Bioengineering Institute) at room temperature for 15 min. Apoptotic cells were detected using flow cytometry (CytoFLEX; Becton, Dickinson and Company) and analyzed using CytExpert software 2.0 (Becton, Dickinson and Company).
Western blotting
Total protein from the PC12 cell line was acquired using RIPA buffer (cat. no. P0013B; Beyotime Institute of Biotechnology) and centrifuged at 4˚C for 15 min, protein concentrations were determined using BCA assays (cat. no. PC0020; Beijing Solarbio Science & Technology Co., Ltd), and samples (20 µg) were separated via 10% SDS-PAGE and transferred to PVDF membranes. The membranes were incubated at room temperature for 2 h in 5% nonfat dried milk. The target protein antibodies (1:1,000) and anti-GAPDH (1:3,000) were incubated with the membranes at 4˚C overnight. The primary antibodies used were as follows: Bax (cat. no. ab32503; Abcam), Bcl-2 (cat. no. 3498; Abcam), cleaved caspase-3 (cat. no. 9661; Abcam), phosphorylated (p)-NF-κB p65 (cat. no. 3033; Abcam), NF-κB p65 (cat. no. 8242; Abcam), with and GAPDH (cat. no. M1000110; Beijing Solarbio Science & Technology Co., Ltd.) as the reference antibody. The secondary antibodies [goat anti- rabbit IgG-HRP (1:5,000; cat. no. SE134; Beijing Solarbio Science & Technology Co., Ltd.) and goat anti-mouse IgG-HRP (cat. no. GB23301; Wuhan Servicebio Technology Co., Ltd.)] were subsequently incubated with membranes at room temperature for 1 h. ECL color developing solution (cat. no. PE0010; Beijing Solarbio Science & Technology Co., Ltd.) was added to the PVDF film for exposure and photographing. Quantity One software 4.0 (Bio-Rad Laboratories, Inc.) was used to perform grayscale analysis of protein bands.
Statistical analysis
The results of three biological replicates are presented as the mean ± standard deviation. SPSS 21.0 software (IBM Corp.) was used for statistical analyses, and the data were analyzed using one-way ANOVA followed by Tukey's post hoc test. P<0.05 was used to indicate a statistically significant difference.
Results
LPS treatment promotes inflammatory response in PC12 cells
As presented in Fig. 1A, PC12 cell viability was reduced with increasing LPS concentration. Cell viability was low with 5 µg/ml LPS treatment, but this was significantly higher than that of the 10 µg/ml LPS treatment.
As demonstrated in Fig. 1B, while 93.3% of the cells were unaffected after the control treatment (LPS-0), cells underwent apoptosis under increasing LPS concentrations. Moreover, higher LPS concentrations enhanced the apoptotic effect. The proportion of early cell apoptosis was 4.41, 6.63, 7.41 and 13.4% with LPS-1, LPS-2.5, LPS-5 and LPS-10 treatment, respectively, whereas the proportion of late cell apoptosis was 3.10, 4.38, 8.55 and 8.02% with LPS-1, LPS-2.5, LPS-5 and LPS-10 treatment, respectively. Furthermore, apoptosis was most pronounced with LPS-5 and LPS-10 treatments (Fig. 1B). Thus, 5 μg/ml LPS evoked a sufficiently high inflammatory response while mildly affecting cell viability.
The expression and concentration of inflammatory factors (IL-1β, IL-6 and TNF-α) both increased with increasing LPS concentration (Fig. 1C and D). The expression levels of IL-1β, IL-6 and TNF-α increased slightly with 1-2.5 µg/ml LPS, increased notably with 5 µg/ml LPS, and peaked with 10 µg/ml LPS. However, there was no significant difference in the IL-1β concentration in the 5-10 µg/ml LPS range.
LPS treatment promotes circRNA_014301 expression in PC12 cells
The relative expression of circRNA_014301 increased with increasing LPS concentration (Fig. 2A). It was slightly upregulated with 1-2.5 µg/ml LPS but was 6 and 12 times higher than that of the control with 5 µg/ml and 10 µg/ml LPS treatments, respectively. These results suggested that LPS induced circRNA_014301 expression in PC12 cells.
Referring to the miRDB database, it was therefore predicted that the following miRNAs could bind to circRNA_014301: miR-200a-3p, miR-141-3p, miR-3120, miR-16-5p, miR-15a-5p, miR-15b-5p, miR-195-5p, miR-497-5p, miR-322-5p, miR-344b-1-3p, miR-410-3p, miR-331-5p and miR-501-5p (Table SI).
Whereas circRNA_014301 and 18S RNA were highly expressed in the cytoplasm, U6 showed high enrichment in the nucleus (Fig. 2B). There were no significant changes in the expression of circRNA_014301 with RNase- and RNase+ treatments. However, the expression of MYT1L was significantly lower with the RNase+ treatment compared with the RNase- treatment, implying that MYT1L was cleaved by the RNase (Fig. 2C). These results suggested that circRNA_014301 was predominantly expressed in the cytoplasm.
circRNA_014301 silencing inhibits inflammation in PC12 cells
As indicated in Fig. S1 siRNA eliminated circRNA_014301 expression in PC12 cells, thus confirming the efficiency of the siRNA-mediated knockdown. Compared with the control, PC12 cell viability was reduced with LPS, si-circRNA_014301 + LPS and si-NC + LPS treatments. It was also more enhanced with si-circRNA_014301 + LPS treatment than with LPS and si-NC + LPS treatments (Fig. 3A).
As demonstrated in Fig. 3B and C, the expression levels and concentration of inflammatory factors (IL-1β, IL-6 and TNF-α) with LPS and si-NC + LPS treatments were significantly higher than those of the control and si-circRNA_014301 + LPS treatments, as analyzed using ELISA and RT-qPCR. The expression level and concentration of TNF-α with si-circRNA_014301 + LPS treatment were significantly higher than those of the control treatment. The concentrations of IL-1β and IL-6 with si-circRNA_014301 + LPS treatment were significantly higher than those of the control treatment. However, there were no significant changes in the expression levels of IL-1β and IL-6 between the control and si-circRNA_014301 + LPS treatment.
The ratio of p-NF-κB/NF-κB was higher with LPS treatment compared with that of the control, followed by the si-NC + LPS and si-circRNA_014301 + LPS treatments (Fig. 3D).
circRNA_014301 silencing inhibits apoptosis in PC12 cells
As demonstrated in Fig. 4A, 2.60 and 2.02% of PC12 cells underwent early and late apoptosis, respectively, with the control treatment. Compared with the control, cell apoptosis increased with all other treatments. With LPS treatment, 6.04 and 10.4% of cells underwent early and late apoptosis, respectively. With si-circRNA_014301 + LPS treatment, the apoptotic effect was milder, with 4.61 and 3.50% of cells undergoing early and late apoptosis, respectively. Remarkably, apoptosis was the highest with si-NC + LPS treatment, where 6.63 and 12.2% of cells underwent early and late apoptosis, respectively. These findings suggested that the siRNA-mediated knockdown of circRNA_014301 expression alleviated apoptosis in PC12 cells.
As presented in Fig. 4B, the protein expression of apoptotic markers (Bax, Bcl-2 and cleaved caspase-3) differed with the various treatments. The relative protein expression of Bax and cleaved caspase-3 was similar, being the highest with LPS treatment, followed by si-NC + LPS, si-circRNA_014301 + LPS and control treatments (Fig. 4C). Conversely, the protein expression levels of Bcl2 were the highest on the control treatment, followed by si-circRNA_014301 + LPS, si-NC + LPS and LPS treatments (Fig. 4C).
Discussion
SCI is invariably associated with spinal cord inflammation that adversely affects the outcome of SCI (43). The PC12 cell line was derived from a pheochromocytoma of rat adrenal medulla. Tischler (44) discovered that these cells differentiate into neurons under treatment with nerve growth factor. He also indicated that they can synthesize and store several neurotransmitters, such as dopamine. PC12 cells can be used as an in vitro cell model of neuronal cells for high-throughput experiments (45). Compared with primary cultured nerve cells, PC12 cell uniformity allows experimental consistency, long-enough cell survival time for observation and maintained nerve cell characteristics (46). The PC12 cell line has been widely used to study nervous system diseases and pathological and physiological characteristics of neurons and to create SCI cellular models (47). In the preset study, increasing concentration of LPS were used to stimulate apoptosis and inflammatory injury in PC12 cells and create a cell model of SCI (34,48). Jiang and Wang (33) reported that 5 µg/ml LPS treatment could induce inflammatory injury in PC12 cells. Indeed, 5 µg/ml LPS treatment evoked a strong inflammatory response while mildly reducing the cell viability. Therefore, 5 µg/mL LPS treatment was deemed suitable for generating a PC12 cell inflammatory model.
Ashwal-Fluss et al (49) demonstrated that circRNAs are produced co-transcriptionally and compete with mRNAs for regular splicing. Therefore, the biogenesis of circRNAs results in reduced synthesis of mRNAs from the same locus. Thus, the production of circRNA acts as an RNA trap for mRNA production (50). circRNA_014301 (51,52) and MYT1L are both located in the cytoplasm. Whereas MYT1L was digested under the presence of RNase, circRNA_01430 was unaffected by the addition of the enzyme. These results suggested that circRNA_014301 was indeed located in the cytoplasm in accordance with Capel et al (51) and Patop et al (52), who revealed that this circRNA_014301 was predominantly cytoplasmic.
A representative function of circRNA is that it can act as a miRNA sponge to regulate the stability or translational efficiency of other RNAs (53). circRNAs and miRNAs can also act as transcriptional regulators or protein-bound RNAs and can even directly be translated into proteins (54). As this type of circRNAs regulates target gene expression, they are called competitive endogenous RNAs (ceRNAs) (53). Further investigation of circRNA and miRNA regulatory pathways will be the focus of follow-up research.
Inflammation serves a crucial role in the pathogenesis of SCI (55). The induced inflammation may result in a further decrease in functional recovery due to the development of scar tissue and the necrosis or apoptosis of neurons and oligodendrocytes (56). Nonetheless, potentially beneficial effects of the inflammatory process have also been reported, illustrating the dual nature of inflammation after SCI trauma (57). Apoptosis is essential for the clearance of potentially injurious inflammatory cells and the subsequent efficient resolution of inflammation (58). The expression of inflammatory genes (IL-1 and IL-1β) and the regulation of inflammatory agents (nitric oxide synthase and cyclooxygenase 2) that serve a potential role in the inflammatory pathways mediating damage of the central nervous system are regulated by the NF-κB family of transcription factors (59). It has been revealed that inhibiting the activation of NF-κB regulates the secondary damage in SCI to a large extent (60). The present study demonstrated that NF-κB activation was suppressed following siRNA-mediated knockdown of circRNA_014301, indicating that circRNA_014301 is involved in the NF-κB pathway, and this hypothesis requires further experimental verification.
Large circRNAs are associated with the biological activities of endothelial cells (61). Li et al (35) indicated that circRNA hsa_circ_0003575 silencing promoted cell proliferation and angiogenesis in oxidized low-density lipoprotein-induced endothelial cells. Furthermore, Dang et al (62) demonstrated that the knockdown of circRNA hsa_circ_001079 suppressed proliferation and promoted apoptosis in hypoxia-induced endothelial cells. circRNA_014301 silencing suppressed PC12 cell inflammation in the present study. The protective regulatory effect of circRNA_014301 silencing may inhibit the development of SCI. Subsequent in vivo experiments should be performed for in-depth verification of circRNA_014301 function. Based on the aforementioned findings, it is hypothesized that circRNA_014301 may constitute a potential biomarker for SCI detection.
Supplementary Material
Relative expression of circRNA_014301 after siRNA knockdown in PC12 cells. aNo significant difference (P<0.05) between control and si-NC; bSignificant difference (P<0.05) between control and si-cricRNA_014301. circRNA, circular RNA; si, small interfering; NC, negative control.
miRNAs binding to circRNA_014301 as detected using the miRDB database.
Acknowledgements
Not applicable.
Funding
No funding was received.
Availability of data and materials
All data generated or analyzed during this study are included in this published article.
Authors' contributions
XX performed the experiments, analyzed the results and wrote the manuscript. YX and KX contributed to data analysis and manuscript revision. All authors have read and approved the final manuscript. XX and YX confirm the authenticity of all the raw data.
Ethics approval and consent to participate
Not applicable.
Patient consent for publication
Not applicable.
Competing interests
The authors declare that they have no competing interests.
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