Clinical and radiomic factors for predicting invasiveness in pulmonary ground‑glass opacity
- Authors:
- Published online on: September 22, 2022 https://doi.org/10.3892/etm.2022.11621
- Article Number: 685
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Copyright: © Dang et al. This is an open access article distributed under the terms of Creative Commons Attribution License.
Abstract
Introduction
The diagnosis rate of pulmonary ground-glass opacity (GGO) has increased significantly with the application of high-resolution chest computed tomography (CT) (1,2). Previous studies have demonstrated that 63-92.6% of persistent GGOs are precancerous lesions or early stage adenocarcinoma (3,4). According to the Internal Association for the Study of Lung Cancer and the American Thoracic Society and European Respiratory Society classification in 2011, adenocarcinoma is classified as atypical adenomatous hyperplasia (AAH), adenocarcinoma in situ (AIS), minimally invasive adenocarcinoma (MIA) and invasive adenocarcinoma (IA) (5). Generally, preinvasive GGOs consist of AAH and AIS, whereas MIA and IA are categorized as invasive lesions (6). To date, the treatment of pulmonary GGOs has often been based on CT manifestations and clinical experience. AAH and AIS are pure GGOs (pGGOs) or mixed GGOs featuring a few solid components on chest CT (7,8), and this type of preinvasive nodule often needs close follow-up or limited resection (9,10). Mixed GGOs with more solid components tend to be invasive lesions and often require segmentectomy or lobectomy with lymph node dissection. Following appropriate surgery, compared with the 100% 5-year disease-free survival (DFS) rate associated with AAH and AIS and the ~100% 5-year DFS rate associated with MIA (11), the 5-year DFS rate of patients with IA remains poor, with previous studies reporting values of 70.5-88.0% (12-16). Therefore, the identification of invasiveness of pulmonary GGOs is important for assessing prognosis and for the decision-making process regarding the choice of the optimal clinical treatment.
Radiomics refers to extrapolation of quantitative clinical features from radiology images (17). In oncology, tumour radiomic features measured by analysing imaging data, including nodal shape and volume, as well as intensity and a series of ‘texture’ features, can be used to investigate the correlation among the diagnosis, prediction and prognosis of patients with cancer (18-20). The purpose of the present study was to determine the invasiveness of GGOs on the basis of the clinical and radiomic features from chest CT.
Patients and methods
Patient selection and grouping
The present study considered for inclusion a total of 268 patients who underwent surgery for pulmonary GGOs at Xuanwu Hospital (Capital Medical University, Beijing, China) between January 2014 and February 2019 (301 GGOs in total; 2 patients had three GGOs and 29 had two GGOs, while the rest had one GGO). The inclusion criteria were as follows: i) Complete records of the patient clinical characteristics, including sex, age, smoking history, family history of lung cancer and pathological type; ii) complete non-enhanced chest CT data within 2 months of the operation; and iii) final pathology results indicating malignant lesions, including AAH, AIS, MIA and IA. The exclusion criteria were as follows: i) Patients had undergone puncture biopsy, radiotherapy, radiofrequency ablation or other treatment of GGOs before the chest CT examination; and ii) the maximum diameter of GGOs on CT images was >3 cm. After evaluation against the inclusion and exclusion criteria, a total of 184 patients with 194 GGOs were included in the present study.
According to the pathology results, the patients who were ultimately included were divided into two groups: i) The preinvasive GGO group, composed of patients with preinvasive lesions, including AAH and AIS; and ii) the invasive GGO group, composed of patients with invasive lesions, including MIA and IA.
Ethics approval and consent to participate
The present study was approved by the Medical Research Ethics Committee of Shijingshan Hospital of Beijing City (Beijing, China; approval no. 2020-12). All the procedures involving human participants were performed in accordance with the ethical standards of both institutional and national research committees. Written informed consent was obtained before surgery from either the patients or their representatives.
Clinical feature selection
A review of the relevant literature was performed to select clinical predictors of GGO invasiveness. The predictors included age, sex, smoking history, family history [positive family history of lung cancer was defined as having a first-degree relative (parent, sibling or child) with lung cancer], nodule location, pathological type, the maximum diameter of the GGO in the three-dimensional (3D) image [the value of the maximum diameter was consistent with the value of ‘original_shape_Maximum3DDiameter’, which is a shape-based radiomic feature extracted by 3D Slicer software (version 4.6.2; http://www.slicer.org) and the GGO consolidation (defined as the maximum dimensions of the area of increased opacification that completely obscured the underlying vascular markings). Subsequently, a 2-round Delphi study (21) was performed using online surveys, and age, sex, smoking history, family history and GGO consolidation were ultimately selected as independent predictors.
Chest CT examination and general imaging feature acquisition
All the preoperative chest CT scans were non-enhanced and performed with one of two machines (Sensation Cardiac 64 or Somatom Definition Flash; Siemens Healthineers). All the CT examinations were performed using the following parameters: 120 kVp; pitch, 1.2; 100-200 mAsec; and collimation, 5.0 mm. The chest CT images of the patients were analysed by two radiologists. The largest diameter of the tumour and consolidation components were separately measured on the lung and mediastinal windows. The final result was determined by averaging the results reported by the two radiologists.
CT texture analysis (TA) Radiomic feature extraction
CT data in DICOM format were imported into 3D-Slicer software. The volume of interest (VOI) was obtained by semiautomatic segmentation using the Segment Editor function. The VOI was then normalized by the NormalizeImageFilter function. Before performing the radiomic feature extraction with SlicerRadiomics (version 2.1.0; https://www.slicer.org/wiki/Documentation/Nightly/Extensions/Radiomics), grey-level discretization and voxel resampling were performed. All the features were calculated with a fixed bin width of 25 HU, and resampling to a voxel size of 0.6x0.6x5.0 mm3 was applied. The radiomic characteristics were divided into the following 107 original features: i) Shape-based (14 features); ii) grey-level dependence matrix (14 features); iii) first-order statistics (18 features); iv) grey-level co-occurrence matrix (24 features); v) grey-level run-length matrix (16 features); vi) grey-level size zone matrix (16 features); and vii) neighbouring grey tone difference matrix (five features). In addition, eight groups of wavelet features were calculated based on the intensity and texture features of the original image using a wavelet filter. Wavelet features are obtained by transforming domain representations of tumor intensity and textural features. These features were applied as either a high (H) or low pass (L) filter in each of the three dimensions (x-axis, from left to right; y-axis, from posterior to anterior; z-axis, from inferior to superior): Wavelet-LHL, wavelet-LHH, wavelet-HLL, wavelet-LLH, wavelet-HLH, wavelet-HHH, wavelet-HHL and wavelet-LLL (22). Each intensity or texture feature extracted from the volume of interest is subjected to eight ways of wavelet transform, and finally eight sets of wavelet transform features (a total of 744 features) are obtained (23). Therefore, the features are concentrated in different frequency ranges within the tumour volume. The process of radiomic feature extraction was consistent with the methods previously described (24).
Stable radiomic feature selection
To obtain stable radiomic features, each image data point was subjected twice to VOI segmentation and radiomic feature extraction. The intraclass correlation coefficient (ICC) for each radiomic feature was calculated and the stable radiomic features were selected as ICC >0.75.
Selection of prediction factors and establishment of prediction model
The patients enrolled in the present study were divided into training and validation cohorts. Multivariate logistic regression analysis with the backwards method (25) was used to select independent predictors from clinical features, including consolidation, age, family history, sex and smoking history, in the training cohort, and receiver operating characteristic (ROC) curves were plotted. Area under the ROC curve (AUC) values represent the predictive ability of the clinical prediction model. For radiomic features, the minimax concave penalty least absolute shrinkage and selection operator (MCP-LASSO) algorithm and 10-fold cross-validation were used to identify independent predictors for distinguishing the two pathological subtypes in the training cohort. Next, ROC curves representing the radiomic prediction model were plotted and the AUC values were calculated. Finally, all the meaningful predictors were used to build a combined prediction model, which was compared with the clinical prediction and radiomic prediction models. Moreover, the validation cohort was used to demonstrate the prediction ability of the prediction models. A nomogram was constructed to predict the invasiveness of individual GGOs, and a decision curve analysis (DCA) was performed and plotted.
Statistical analysis
The means of continuous variables were compared using the independent Student's t-test (normally distributed data) or Mann-Whitney U test (non-normally distributed data) and the Pearson χ2 test was used to analyse differences between categorical variables in two groups using SPSS (version 22.0; IBM Corp.). R software (version 3.5.2; http://www.R-project.org) was also used for data analysis. ICC was calculated using the ‘psych’ package (version 1.9.12.31; https://personality-project.org/r/psych) in R. The ‘MASS’ package (version 7.3-51.4; http://cran.stat.auckland.ac.nz/web/packages/MASS/) was used for logistic regression in the clinical features group. MCP-LASSO regression analysis was performed for radiomic features and combined predictors selection using the ‘ncvreg’ package (version 3.11.2; http://pbreheny.github.io/ncvreg) in R. The ROC curves were built using the ‘pROC’ (version 1.16.1; http://expasy.org/tools/pROC/) and ‘ggplot2’ (version 3.2.1; http://ggplot2.tidyverse.org) packages in R. The ‘OptimalCutpoints’ package (version 1.1-5; http://cran.stat.auckland.ac.nz/web/packages/OptimalCutpoints/) was used for cut-off calculation in R software. A nomogram was formulated using the package ‘rms’ (version 6.1-1; https://hbiostat.org/R/rms/) in R software. The concordance index (C-index), which represents the performance of the nomogram, was calculated with the ‘rcorrcens’ function present in the ‘Hmisc’ package (version 4.3-1; https://github.com/harrelfe/Hmisc) in R software. The ROC curves of the training cohort and validation cohort were compared by DeLong's test. P<0.05 was considered to indicate a statistically significant difference. The related computerized programs with R are listed in Appendix S1.
Results
Clinical features
A total of 184 patients were included in the present study (Fig. 1). Among these 184 patients, 10 presented two GGOs, while the remaining patients presented a single GGO, for a total of 194 GGOs. Of these 194 GGOs, 72 (including 21 AAH and 51 AIS) were in the preinvasive GGO group and 122 (including 31 MIA and 91 IA) were in the invasive GGO group. The clinical features of the two groups of patients were analysed (Table I) and there were no significant differences with regard to sex (P=0.757), age (P=0.364), smoking history (P=0.725), family history (P=0.266) or nodule location (P=0.585) between the preinvasive GGO and invasive GGO groups. However, there were significant differences in the maximum diameter (P<0.001) and consolidation (P<0.001) between the two groups. All the GGOs were divided into two groups: i) The clinical training group, which included 136 patients who were hospitalized between January 2014 and January 2018, with 144 GGOs; and ii) the clinical validation cohort, which included 48 patients who were hospitalized between February 2018 and February 2019, with 50 GGOs.
Radiomic feature selection
Through TA of each patient's chest CT images, 851 radiomic features were obtained, including 107 original features and eight groups of wavelet features (each group contained 93 wavelet feature factors) obtained by decomposition of the original features (with the exception of 14 shape features). With an ICC >0.75 as the threshold, 613 stable radiomic features were identified, including 528 wavelet features and 85 original features (Fig. 2).
Clinical prediction model
The logistic regression analysis results revealed that consolidation was an independent predictor of invasiveness in the training cohort of 144 GGOs (P<0.001; Fig. 3). The ROC curve based on these plots was used to represent the clinical prediction model (clinical training cohort) of clinical features for the invasiveness of GGO. The cut-off value of consolidation was 0.23 cm (sensitivity, 0.681; specificity, 0.792; positive predictive value, 0.849; negative predictive value, 0.592; Fig. 3). The formula for calculating the clinical prediction model score was as follows: Clinical-score=-0.312+2.588 x consolidation.
Radiomic prediction model
After MCP-LASSO regression analysis and 10-fold cross-validation of 613 radiomic features in the clinical training cohort of 144 GGOs, two radiomic features, waveletHLL_ngtdm_Coarseness (P<0.01) and waveletLHH_firstorder_Maximum (P=0.01), were identified as independent predictors of invasiveness. ROC curves were drawn based on these radiomic features. In the prediction model, the AUCs of the texture features waveletHLL_ngtdm_Coarseness and waveletLHH_firstorder_Maximum were 0.692 (95% CI, 0.60-0.783) and 0.658 (95% CI, 0.557-0.758), respectively. The ability of a single texture feature to predict GGO invasiveness was poor. The combined predictive ability of all the texture features, radiomic training, was 0.719 (95% CI, 0.628-0.81), indicating improved predictive ability (Fig. 4). The formula for calculating the radiomic prediction model score was as follows: Radiomic-score=2.422-23.616 x waveletHLL_ngtdm_Coarseness-0.007 x waveletLHH_firstorder_Maximum.
Combined prediction model
Consolidation, waveletHLL_ngtdm_Coarseness, waveletLLH_glrlm_LongRunEmphasis and waveletLHH_firstorder_Maximum were selected from all the clinical and radiomic features by MCP-LASSO regression analysis and 10-fold cross-validation to construct the combined prediction model. The ROC curves are shown in Fig. 5. The combined prediction model score was calculated as follows: Combined-score=4.508+3.11 x consolidation-waveletHLL_ngtdm_Coarseness-0.827 x waveletHLL_glrlm_LongRunEmphasis-0.015 x waveletLHH_firstorder_Maximum.
The sensitivity, specificity, positive predictive value, negative predictive value, accuracy, AUC and 95% CI of each prediction model in the training cohort and validation cohort were calculated to show the predictive ability (Table II). The predictive ability of the combined prediction model (AUC, 0.864; 95% CI, 0.802-0.926) was improved compared with that of any single prediction model developed with clinical (AUC, 0.755; 95% CI, 0.682-0.827) or radiomic (AUC, 0.719; 95% CI, 0.628-0.81) features.
Nomogram establishment and validation
Based on the four predictors selected in the combined model, a nomogram was constructed to predict the individual invasiveness of GGOs (Fig. 6). In the training cohort, the C-index of the invasion prediction nomogram was 0.864 (95% CI, 0.833-0.895), while it was 0.815 (95% CI, 0.905-0.969) in the verification cohort. The nomogram was subjected to 1,000 bootstrap resamples for internal validation and the calibration curve was plotted (Fig. 7). The mean absolute errors of the calibration curves were 0.027 in the training cohort and 0.031 in the validation cohort.
DCA
DCA is a method used to evaluate prediction models (26). The clinical decision curve was analysed based on the selected predictors (Fig. 8). A total of three predictive models of GGO invasiveness, namely the clinical, radiomic and combined models, were used in the training and verification groups. The results are presented in Fig. 8A and B, where the x-axis shows the threshold probability (Pt) and the y-axis shows the net benefit, which was calculated by adding the advantages (true-positive) and subtracting the disadvantages (false-positive). Within a large range of Pt values (20-90%; Fig. 8), the combined model has a greater net benefit than the clinical and radiomic models. For example, when the threshold probability was 45%, the net benefit rate was 46.7% in the combined model, 36.2% in the clinical model and 38.1% in the radiomic model. Therefore, the combined model has more clinical significance in predicting the invasiveness of GGOs.
Discussion
To date, it is still a challenge for thoracic surgeons to select the best treatment for pulmonary GGOs. The main reason is that it is difficult to classify GGOs before surgery, although a new classification of pulmonary adenocarcinoma was defined in 2011(27). Preoperative percutaneous CT-guided fine-needle aspiration biopsy, endobronchial ultrasonography images and virtual bronchoscopy have been used for the pathological diagnosis of GGOs, but the diagnostic yield remains lower for smaller pGGOs (28,29). An increasing number of studies have focused on identifying imaging biomarkers for GGO classification through chest CT, especially for the identification of invasive GGO lesions (30-40).
On chest CT, preinvasive GGOs often appear as pGGOs, while invasive GGOs more often appear as larger, mixed GGOs (29-32). Eguchi et al (33) reported that if the diameter of a pGGO is >11 mm, it is likely to be invasive. Li et al (34) reported a cut-off diameter of 13.5 mm for evaluating the invasiveness of GGO nodules. In 2013, Lee et al (16) reported that the cut-off diameter for invasive GGOs was 14 mm. Another study published in 2019 reported that in the partly solid group of GGOs, a diameter >1 cm was a significant factor for predicting invasiveness (35). A study performed on 232 patients and published in 2015 found that the solid component sizes with lung window setting (SCLW) and whole tumour sizes with mediastinal window setting (WTMV) were significantly correlated with tumour pathological invasion (36). The ROC curve analysis showed that for all subjects, the predictability of invasive results based on solid component size (such as SCLW and WTMV) was improved compared with that based on the whole tumour size (the maximum diameter of lung window tumour). This conclusion is in agreement with the results of the present study. However, the maximum tumour diameter was not an independent predictor of GGO invasion, while consolidation was an independent predictor of GGO invasion.
TA is an important type of medical image processing that can measure the tissue heterogeneity characteristics otherwise not observable by naked eyes, and can quantitatively display subtle changes in the image pixel values and arrangement (17). To the best of our knowledge, only a few studies have introduced TA and radiomic features of chest CT to the differentiation of invasive pulmonary GGOs. Chae et al (37) demonstrated that in part-solid GGOs, higher kurtosis and a smaller mass could significantly differentiate preinvasive lesions from invasive pulmonary adenocarcinomas (IPAs). Li et al (38) found that the voxel count and the correlation feature [correlation is a value between 0 (uncorrelated) and 1 (perfectly correlated) showing the linear dependency of gray level values to their respective voxels in the GLCM] were significant differentiators of preinvasive lesions from IPAs and MIAs. Another study in 2018 found that pGGOs or mixed lesions and fractal dimension were predictors of IAs that appear as GGOs (39). In another study, a support vector machine trained on all the heterogeneity indicators showed high accuracy (88.1%) in differentiating between indolent and invasive lesions (40). In these studies, only 2D or 3D original texture features were used and wavelet transform features were excluded. To the best of our knowledge, the present study is the first that enrolled 107 original features and eight groups of wavelet features (each group containing 93 wavelet feature factors) for radiomic predictor selection to differentiate the invasiveness of GGOs. For high-dimensional data, to avoid overfitting in the prediction, MCP-LASSO regression and 10-fold cross-validation analysis were used to identify relevant variables for the subsequent establishment of the radiomic prediction model. Finally, waveletHLL_ngtdm_Coarseness and waveletLHH_firstorder_Maximum were selected as independent predictors of invasiveness. Ngtdm_Coarseness is a measure of the average difference between the centre voxel and its neighbourhood, and is an indicator of the spatial change rate (41,42). A higher value indicates a lower spatial rate of change and a more uniform local texture. In the present study, the regression coefficient of waveletHLL_ngtdm_coarseness was -23.616, which indicated that the more uniform GGO the lower the probability of invasiveness. Firstorder_Maximum is the maximum grey intensity in the region of interest (43). The regression coefficient of waveletLHH_firstorder_Maximum was -0.007, which indicated that the smaller the maximum grey intensity of GGO the higher the probability of invasiveness. The AUCs of waveletHLL_ngtdm_Coarseness and waveletLHH_firstorder_Maximum were 0.692 (95% CI, 0.60-0.783) and 0.658 (95% CI, 0.557-0.758), respectively. However, the combination of the two radiomic predictors showed improved predictive ability for GGO invasion (training group: AUC, 0.719; 95% CI, 0.628-0.81; validation group: AUC, 0.87; 95% CI, 0.776-0.966).
In the combined prediction model for differentiating the invasiveness of GGOs, predictors were selected from all six clinical features and 613 stable radiomic features. Consolidation, waveletHLL_ngtdm_Coarseness, waveletLHH_firstorder_ Maximum and waveletLLH_glrlm_LongRunEmphasis were considered. Glrlm_LongRunEmphais is a measure of the distribution of long run lengths, and it can reflect the distribution or adjacent relationships of pixels in the images (44). The regression coefficient of waveletLLH_ glrlm_Longrunemphasis was -0.827, which indicated that GGOs with shorter long-range lengths and finer textures are more likely to be invasive. The predictive ability of the combined prediction model was improved compared with that of any single prediction model developed with clinical or radiomic features. The nomogram for the individual prediction model was constructed with the four predictors. Each GGO has a corresponding value of consolidation, waveletHLL_ngtdm_Coarseness, waveletLLH_glrlm_LongRunEmphasis and waveletLHH_firstorder_Maximum and the total score was calculated. In clinical application, the probability of the invasiveness of GGO with a total score >220 is >95% (Fig S1). Clinically, for such nodules, radical surgery such as lobectomy or segmental resection and lymph node dissection are preferred. For nodules with a total score <160, the probability of invasiveness is <10% (Fig S1). Clinically, regular observation or localized resection are the main methods. The cutoff point of the nomogram is 0.5 and the corresponding total score is 185. The GGO can be diagnosed as having invasive potential GGO when the total score is >185. The C-index (training cohort: 0.864; 95% CI, 0.833-0.895; and validation cohort: 0.937; 95% CI, 0.905-0.969) and the calibration curve showed that the nomogram used in the present study had good prediction ability.
Traditional diagnostic test indicators, such as sensitivity, specificity and AUC, only measure the diagnostic accuracy of the prediction model, but fail to consider the clinical utility of a specific model. The advantage of DCA is that it integrates the preferences of patients or decision makers into the analysis (26). In the present study, three predictive models of GGO invasiveness were analysed using DCA, and the combined model showed more clinical significance in predicting the invasiveness of GGOs.
The present study has some limitations. Due to the small sample size, the pGGO group was not analysed individually. Although we hypothesized that the maximum diameter and some radiomic features might show a good prediction ability for invasiveness in the pGGO group, this hypothesis needs to be confirmed by studies with larger sample sizes in the future.
In conclusion, the combined prediction model constructed with clinical and radiomic predictors showed a good ability to predict invasiveness in GGOs. The present study may help thoracic surgeons select the optimal treatment for patients with pulmonary GGOs.
Supplementary Material
Related computerized programs for statistical analysis with R
The distribution of the scores in the training set and validation set.
Acknowledgements
Not applicable.
Funding
Funding: This study was supported by the Beijing Municipal Administration of Hospital Clinical Medicine Development of Special Funding Support (grant no. XMLX201702).
Availability of data and materials
The datasets used and/or analysed during the current study are available from the corresponding author on reasonable request. All codes used with R are available in Appendix S1.
Authors' contributions
YD was responsible for conceiving and designing the study, data analysis, writing of the manuscript and all manuscript revisions. RW and KQ were responsible for patient data collection and analysis. JL was responsible for CT data collection and editing of the manuscript. YZ was responsible for project conceptualization, manuscript revisions and editing of the manuscript. YD and YZ confirm the authenticity of all the raw data. All authors read and approved the final manuscript.
Ethics approval and consent to participate
The present study was approved by the Medical Research Ethics Committee of Shijingshan Hospital of Beijing City (Beijing, China; approval no. 2020-12). All the procedures involving human participants were performed in accordance with the ethical standards of both institutional and national research committees. Written informed consent was obtained before surgery from either the patients or their representatives.
Patient consent for publication
Not applicable.
Competing interests
The authors declare that they have no competing interests.
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