MicroRNA-124 inhibits the proliferation of C6 glioma cells by targeting Smad4
- Authors:
- Published online on: August 3, 2017 https://doi.org/10.3892/ijmm.2017.3088
- Pages: 1226-1234
Abstract
Introduction
Gliomas account for 29% of all primary brain tumors and are classified by the World Health Organization (WHO) into 4 grades of malignancy (1). Grade IV astrocytoma [glioblastoma multiforme (GBM)] is the most aggressive form of brain tumor in adults and is characterized by rapid cell proliferation, immunosuppressive capability and high malignancy (2). GBM is typically resistant to surgery, radiation, chemotherapy and drug treatment. Thus, there is an urgent need to elucidate the underlying molecular mechanisms involved in the genesis and progression of glioma, and to develop effective therapies.
Transforming growth factor-β (TGF-β) has been demonstrated to function as an oncogenic factor in high-grade glioma, and an increased TGF-β expression can enhance glioma outgrowth and prevent glioma-initiating cell (GIC) differentiation (3,4). The phenomenon has also been shown to be associated with a high expression of leukemia-inhibitory factor (LIF) induced by the TGF-β/Smad signaling pathway (5). In general, TGF-β functions by binding to type I and II TGF-β receptors on the cell membrane. Upon binding TGF-β, type II receptors phosphorylate and activate type I receptors, which then propagate the signal by phosphorylating the receptor-regulated Smads (R-Smads), Smad2 and Smad3. These R-Smad members can form a complex with Smad4, which subsequently translocates to the nucleus and governs target gene expression (6). Therefore, these signal transducing proteins of the TGF-β pathway are potential therapeutic targets for effectively treating patients with glioma.
MicroRNAs (miRNAs or miRs) comprise a class of small non-coding RNAs, which regulate gene expression during both normal and neoplastic development. miRNAs are generated by RNA polymerase II as longer precursor RNAs in the nucleus and contain hairpins. Subsequently, precursor RNAs are transported to the cytoplasm and are processed into 21–23 nucleotide-long RNA molecules by the RNase III enzymes Drosha and Dicer (7,8). Mature miRNAs regulate gene expression by inhibiting mRNA translation or inducing mRNA degradation after binding to the complementary sequences in the 3′-untranslated regions (3′-UTRs) of target mRNAs. Emerging data have indicated that miRNAs are involved in tumor proliferation and apoptosis and can function either as oncogenes or tumor suppressor genes (9,10). A number of miRNAs have been identified, including some that are involved in the malignant progression of glioma (11,12). In particular, miR-124 plays a crucial role in neurogenesis and stimulates neuronal differentiation. The expression level of miR-124 is high in the central nervous system, but is low or even absent in high-grade glioma (13,14). The loss of miR-124 expression has been shown to enhance stem cell-like traits and to increase the invasive ability of glioma cells (15). Furthermore, miR-124 overexpression in GBM has been shown to result in decreased migration and invasion (16,17). In addition, miR-124 has been shown to inhibit the signal transducer and activator of transcription 3 (Stat3)-signaling pathway to promote T cell-mediated immune clearance of glioma (18). Therefore, miR-124 may serve as an effective therapeutic target if its functional network is clarified.
Using target-prediction software programs (TargetScan and Segal Lab), we noted that putative pairing regions for miR-124-3p exist within the 3′-UTR of rat and human Smad4 mRNA. In this study, our primary aim was to explore the associations between miR-124 and Smad4, as well as their effects on glioma. Establishing the mechanism whereby miR-124 regulates glioma progression may provide fundamental supportive evidence for novel clinical therapies for glioma.
Materials and methods
Animals
All animals were supplied by the Experimental Animal Center of Jilin University (Changchun, China). All procedures involving animals were approved by the Ethics Committee of Jilin University and conformed to regulatory standards.
Cell culture
Rat C6 glioma (Cell Bank of the Chinese Academy of Science in Shanghai, China) were cultured in DMEM/F12 supplemented with 10% fetal bovine serum (FBS; both from Gibco, Grand Island, NY, USA), 100 U/ml penicillin and 100 µg/ml streptomycin (Genview, Calimesa, CA, USA), at 37°C in a humidified atmosphere with 5% CO2. The cells were passaged at a ratio of 1:3 when they became confluent.
Astrocytes were isolated from the cortices of neonatal rats (1–3 days old, n=6) as previously described by Schwartz and Wilson with some modifications (19). Following the removal of all meninges carefully from the brain surface, the rat cortex tissue was dissected from brain and completely triturated using fire-polished Pasteur pipettes. The destroyed tissues were then treated with 0.25% Trypsin/EDTA for 30 min, and passed through 40 µm nylon mesh and centrifuged to collect the enzymatically dissociated cells. The collected cells were suspended in the above-mentioned complete culture medium, and plated in 25T flasks and cultured for almost 2 weeks; the medium was replaced every 2 days.
When the cells were confluent, the flasks were shaken at 250 rpm overnight at 37°C. After replacing with fresh medium, the cells were treated with cytosine arabinoside (5 µM; Sigma, St. Louis, MO, USA) for 48 h. Th cells were then subcultured to the next passage. The percentage of GFAP-expressing cells at passage 1 in these cultures was found to be >95%.
Cell transfection
To perform cell transfection, the C6 cells were plated at 2×105 cells/well. After 24 h, the cells were transfected with the miR-124 mimic, negative control (NC), small interfering RNA against Smad4 (siR-Smad4), or an siR-NC (50 nM; GenePharma, Shanghai, China), using Lipofectamine 2000 (Invitrogen, Carlsbad, CA, USA), after which they were incubated at 37°C for 5 h. Subsequently, the supernatant was replaced with fresh medium, and the cells were cultured for a further 24 h.
RNA extraction and RT-qPCR
Total RNA was extracted using TRIzol reagent (Invitrogen). To analyze miRNA-124 expression, total RNA was polyadenylated and reverse transcribed using the All-in-One™ miRNA First-Strand cDNA Synthesis kit (GeneCopoeia, Rockville, MD, USA). The level of miRNA-124 (RmiRQP0074; GeneCopoeia) produced in the cells and tissues was detected using the All-in-OneTM miRNA RT-qPCR Detection kit (GeneCopoeia). Specific primers (GeneCopoeia) were used to amplify miR-124-3p, and RnU6 was used as a normalization control for miRNA expression.
To analyze mRNA expression, cDNA was synthesized using the GoScript™ Reverse Transcription system (Promega, Madison, WI, USA). Real-time PCR reactions were performed using SYBR Premix Dimer-Eraser (Takara, Dalian, China). GAPDH was used as a normalization control for mRNA expression. The qPCR primer sequences were as follows: GAPDH forward, 5′-AGACAGCCGCATCTTCTTGT-3′ and reverse, 5′-CTTGCCGTGGGTAGAGTCAT-3′; Smad4 forward, 5′-CCATCAGTCTGTCTGCTGCT-3′ and reverse, 5′-TGATGCTCTGTCTCGGGTAG-3′; LIF forward, 5′-GTGCCAATGCCCTCTTTATT-3′ and reverse, 5′-TGGTCTTCTCTGTCCCATTG-3′. Relative quantification numbers were calculated using the 2−ΔΔCt method, which is based on the ratio of gene expression between an experimental group and a control group.
Immunofluorescence staining
The C6 cells were fixed in 4% paraformaldehyde. Normal goat serum was used to block nonspecific binding. A rabbit anti-Smad2/3 antibody (1:800; #8685; Cell Signaling Technology, Inc., Danvers, MA, USA) and a mouse anti-Smad4 antibody (1:100; sc-7966; Santa Cruz Biotechnology, Santa Cruz, CA, USA) were used as a primary antibody. Following an overnight incubation with the primary antibody at 4°C, the cells were further incubated with goat anti-rabbit Alexa Fluor 594 (1:200; #111-585-144) and goat anti-mouse Alexa Fluor 488 (1:200; #111-545-146)-conjugated secondary antibodies (Jackson ImmunoResearch Inc., West Grove, PA, USA) for 1 h at room temperature. Nuclei were stained with Hoechst 33342 (Invitrogen).
Western blot analysis
Total protein samples were collected from the C6 cells after lysing them in RIPA cell lysis buffer containing PMSF and phosphorylase inhibitors (Beijing Dingguo Changsheng Biotechnology Co., Ltd., Beijing, China). The lysates were centrifuged at 12,000 rpm for 15 min at 4°C. Protein concentrations were determined using the Bicinchoninic Acid Protein Assay kit (Beyotime Institute of Biotechnology, Haimen, China). The proteins were denatured for 5 min. The proteins were then concentrated in 5% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) stacking gels, separated on 10% SDS-PAGE gels, and transferred onto PVDF membranes (Roche, Mannheim, Germany). The membranes were then blocked in 5% non-fat milk and incubated with antibodies against Smad4 (1:1,000; #38454), Stat3 (1:1,000; #12640), phosphorylated-Stat3 (p-Stat3; 1:2,000; #9145), c-Myc (1:1,000; #5605), cleaved caspase-3 (1:1,000; #9664) and GAPDH (1:1,000; #5174) (all from Cell Signaling Technology, Inc.). The PVDF membranes were then washed with Tris-buffered saline containing 1% Tween-20 and probed with the secondary antibody peroxidase-conjugated goat anti-rabbit IgG (H+L) (1:5,000; #111453; Beijing Dingguo Changsheng Biotechnology Co., Ltd.) for 2 h at room temperature. The signal was detected by chemiluminescence using the ECL-Plus detection system (Amersham Pharmacia Biotech, Arlington Heights, IL, USA). The densitometric intensities of protein bands were semi-quantified using Bandscan 5.0 (Glyko Biomedical, Novato, CA, USA) software and values were normalized to those of GAPDH for each sample.
Cell proliferation assay
The viability of the C6 cells transfected with miR-124 mimics, NC, siR-Smad4, or siR-NC was assessed at 3 time points (days 1, 2, and 3) after seeding 2×103 transfected cells/well into 96-well culture plates. Cell proliferation was measured using the MTT Assay kit (Beyotime Institute of Biotechnology). According to the manufacturer's instructions, the absorbance was measured at 450 nm using a Infinite M200 PRO NanoQuant (Tecan, Männedorf, Switzerland). Three independent experiments were performed for each group.
Enzyme-linked immunosorbent assays (ELISAs)
The C6 cells were cultured in DMEM/F-12 supplemented with 10% FBS until they reached 70% confluence. Subsequently, the C6 cells were transfected with the miR-124 mimic, NC, siR-Smad4 or siR-NC (50 nM final concentration), incubated at 37°C for 5 h, and the supernatant was then replaced with fresh medium and the cells were grown for a further 24 h before the medium was collected and filter-sterilized. LIF secretion was quantified using an LIF ELISA kit (Elabscience, Wuhan, China), according to the manufacturer's instructions.
Target gene bioinformatic prediction and luciferase reporter assay
The target site of rno-miR-124-3p within the 3′-UTR region of SMAD4 mRNA was predicted using the target-prediction software programs (http://www.targetscan.org/vert_71/) and Segal Lab online microRNA prediction tool (https://genie.weizmann.ac.il/pubs/mir07/mir07_prediction.html).
For luciferase reporter assay, the 3′-UTR of Smad4 was cut from the PUC57-Smad4 vector (Promega) and inserted into the psiCHECK-2 vector (Promega), using the XboI (New England BioLabs, Ipswich, MA, USA) and NotI (New England BioLabs) restriction enzyme sites, and the resulting vector was designated as psiCHECK-Smad4. The predicted miR-124 binding site of the Smad4 3′-UTR was mutated and then inserted into the psiCHECK-2 vector, which was designated as psiCHECK-Smad4-mut. Constructs were verified by sequencing. 293 cells (Cell Bank of the Chinese Academy of Sciences) were cultured in 48-well plates in DMEM/F-12 supplemented with 10% FBS without antibiotics until they reached ~80% confluency. The cells were then co-transfected with rno-miR-124-3p or miR-NC (50 nM) and psiCHECK-Smad4 or psiCHECK-Smad4-mut (100 pg), using Lipofectamine 2000. Following transfection for 5 h, the medium was replaced with fresh mediaum containing 10% FBS. Following a 48-h transfection, light emission was measured. The luciferase assay was conducted using the Dual-Glo Luciferase Assay system (Promega), following the manufacturer's instructions. Light emission was measured using a GloMax® 96 Microplate Luminometer (Promega). The ratios of Renilla versus firefly luciferase signals served as a measurement of reporter activity normalized for the transfection efficiency.
Statistical analysis
Experimental data are presented as the means ± standard deviation. All statistical analyses were performed and all graphs were prepared using GraphPad Prism 6 statistical software (GraphPad Software, Inc., La Jolla, CA, USA). Differences were considered statistically significant with a value of P<0.05.
Results
miR-124 expression is low in C6 cells and the overexpression of miR-124 inhibits cell proliferation
To explore the functional roles of miR-124 in the proliferation and apoptosis of glioma cells, miR-124 expression was analyzed in C6 cells, non-tumor rat brain tissues and normal rat astrocytes by RT-qPCR. The level of miR-124 expression in the C6 cells was significantly lower than that in the non-tumor rat brain tissues and astrocytes (Fig. 1A). To overexpress miR-124, the C6 cells were transfected with miR-124 mimics for 48 h, and the control cells were transfected separately with negative control (NC) for 48 h. The level of miR-124 distinctly increased in the miR-124 mimic-transfected group, compared to that observed in the NC group (Fig. 1B). In addition, we observed that C6 cell growth decreased following miR-124 overexpression (Fig. 1C). MTT assays were conducted to confirm the changes in the proliferation of the C6 cells following the overexpression of miR-124. The results demonstrated that miR-124 upregulation significantly inhibited the proliferation of C6 cells for up to 3 days (Fig. 1D). These results implied that low miR-124 expression may play a crucial role in GBM progression.
Smad4 is a direct target of miR-124
The TGF-β/Smad pathway is considered a potential target for the clinical treatment of glioma. As shown in this study, the Smad2, Smad3, and Smad4 proteins were strongly expressed in the C6 cells under normal culture conditions, indicating that the TGF-β/Smad pathway was activated (Fig. 2A). Using target-prediction software programs (TargetScan and Segal Lab), the 1921bp–1926bp of nucleotides sequence within 3′-UTR of the rat Smad4 mRNA (NM_019275.3) was identified as a theoretical seed site of miR-124 (Fig. 2B). Hence, miR-124 may affect downstream Smad4 effector functions in the cytoplasm of C6 cells by regulating Smad4 expression. RT-qPCR analysis revealed that the Smad4 mRNA level was significantly decreased in the C6 cells upon the overexpression of miR-124 (Fig. 2C). The transient overexpression of miR-124 in the C6 cells also downregulated Smad4 at the protein level (Fig. 2D). The protein levels of Smad2/3 were measured to determine whether miR-124 regulates Smad2/3 expression. However, no marked differences in their expression were observed (Fig. 2D). These results implied that miR-124 regulated Smad4 expression without influencing Smad2/3 expression.
To confirm that Smad4 is indeed directly targeted by miR-124, we examined whether miR-124 recognized the 3′-UTR of Smad4 mRNA by performing Dual-Luciferase reporter assays. The 3′-UTR of Smad4 was inserted into the the psiCHECK-2 vector, after which several constructs were sequenced. Smad4-mut was created as a control vector. The data indicated that miR-124 overexpression significantly inhibited the luciferase activity of psiCHECK-smad4, but not that of psiCHECK-smad4-mut (Fig. 2E). These results confirmed that miR-124 targets the 3′-UTR of Smad4 to directly suppress its expression.
Downregulation of Smad4 inhibits C6 cell proliferation
The complete pathological significance of Smad4 in glioma remains unclear. Thus, in this study, to explore the potential role of Smad4 in C6 cells, Smad4 was knocked down by transfection with siR-Smad4 or siR-NC. AT 24 h after transfection, Smad4 expression was significantly decreased in the siR-Smad4 group, compared to that in the siR-NC group (Fig. 3A and B). As with miR-124 overexpression, Smad4 downregulation also restricted the proliferation of the C6 cells (Fig. 3C). The results from MTT assay also confirmed that C6 cell proliferation was inhibited by the knockdown of Smad4 (Fig. 3D). We can thus conclude that Smad4 downregulation inhibited C6 cell proliferation, and thus the inhibitory effects of miR-124 on C6 cell growth interfered with Smad4 expression.
miR-124 reduces Stat3 expression by directly targeting Stat3 and through the modulation of Smad4 expression
Based on the TargetScan results (www.targetscan.com) and previous research (18), miR-124 binds to the 3′-UTR of Stat3. Theoretically, miR-124 can inhibit Stat3 expression and thus overcome Stat3-mediated downstream suppression in GBM. Western blot analysis was performed to confirm the effects of miR-124 on the Jak/Stat pathway. In agreement with a previous study (18), Stat3 and p-Stat3 production was inhibited at the protein level by miR-124 overexpression (Fig. 4A). Previously, Peñuelas et al demonstrated that the TGF-β/Smad complex can activate the Jak/Stat Pathway via the induction of LIF in patient-derived GICs (5). Thus, in this study, to determine whether differences in Smad4 expression affect Stat3 expression, the C6 cells were transfected with siR-Smad4 or siR-NC, after which western blot analysis was conducted. The results revealed that reducing Smad4 expression significantly decreased Stat3 expression (Fig. 4B). In addition, to determine whether Stat3 expression was also regulated by miR-124 through LIF induction, the level of LIF was detected by RT-qPCR and ELISA. The RT-qPCR results demonstrated that siR-Smad4 reduced the mRNA level of LIF (Fig. 4C), but the ELISA results revealed that no significant change occurred at the protein level (Fig. 4D) These results may be due to the basal level of LIF secretion which is low in C6 cells. Taken together, these results indicate that Stat3 expression can be directly suppressed by miR-124 and by Smad4-dependent suppression in C6 cells, but not through LIF induction.
miR-124 inhibits the proliferation of C6 cells and decreases c-Myc expression
Zhu et al reported that TGF-β activates both Smad-dependent and Smad-independent pathways, recruiting Smad4 to the Smad-binding element (SBE) of the c-Myc promoter, thereby promoting cell proliferation (20). In this study, c-Myc expression significantly decreased in the presence of miR-124 mimics and siR-Smad4 in C6 cells (Fig. 5A). Cleaved caspase-3 was detected by western blot anaysis to determine whether apoptosis occurs in the C6 cells after miR-124 overexpression. Cleaved caspase-3 was only distinctly expressed in the C6 cells after miR-124 overexpression (Fig. 5B). Based on these results, we suggest that miR-124 may influence the apoptosis of C6 glioma cells, but not through Smad4 modulation. Furthermore, the overexpression of miR-124 suppressed Smad4 production, leading to c-Myc downregulation, which inhibited the proliferation of C6 cells.
Discussion
In the present study, we confirmed the following: i) miR-124 expression was significantly downregulated in C6 glioma cells compared to in normal rat brain tissue and astrocytes, which was consistent with a previous report (15); ii) restoring miR-124 expression inhibited C6 cell proliferation, which correlated with Smad4 downregulation; and iii) Smad4 is a novel direct target gene of miR-124 that controls c-Myc expression in C6 cells.
Glioma is the most aggressive tumor type of the nervous system, and recurrence is high following therapy (21,22). To date, many aspects of the molecular mechanisms of glioma tumorigenesis and progression have been investigated. miR-124 has been classified as a tumor suppressor in several types of human cancers (23–25). A number of studies have generated data indicating that miR-124 expression is significantly suppressed in glioma cells compared with normal brain tissue, and miR-124 expression levels negatively correlate with the pathological grade of glioma (15,16,18,26–28). Several genes that control the biological behavior of glioma cells, such as self-renewal (proliferation), migration and invasion are direct targets of miR-124, including Stat3, IQGAP1, ROCK1, SOS1, SLC16A1, and CDK4 (18,26–30). These results indicate that in glioma cells, miR-124 functions through the post-transcriptional downregulation of multiple target genes. As with other miRNAs, miR-124 has numerous potential target genes and the underlying molecular mechanisms whereby miR-124 controls glioma cell proliferation are not limited to those target genes mentioned above.
TGF-β is a well-known growth factor and is generally considered to function as a tumor suppressor. However, emerging evidence has indicated that in some tumor types, specifically in high-grade glioma, TGF-β acts an oncogenic factor by increasing tumor cell motility and invasion (5,31–34). Therefore, TGF-β and its functional pathways are considered as potential therapeutic targets for glioma. In the Smad-dependent TGF-β signaling pathway, there are 3 types of signal-transducing proteins, including Smad2, Smad3 and Smad4. Smad4 is also an indispensable element of the bone morphogenetic protein (BMP)-signaling pathway. The BMP signaling pathway has been shown to promote tumorigenesis in a murine model of high-grade glioma (35). In addition, Smad4 protein is highly expressed in glioma; therefore, Smad4 is a crucial target gene in the treatment of glioma. Based on the inverse correlation between miR-124 with Smad4 expression within glioma cells, we hypothesized that the lower expression of miR-124 promoted Smad4 expression. Recently, Zu et al identified Smad4 as a novel target of miR-124 in human non-small cell lung cancer (36). In the present study, we confirmed that Smad4 was a novel direct target gene of miR-124 in C6 glioma cells. These results imply that miR-124 simultaneously influences the TGF-β/Smad and BMP signaling pathways by attenuating the Smad4 protein level.
Through a Smad-dependent manner, TGF-β can activate the Jak-Stat3 pathway and promote the self-renewal of human GICs (5). Unexpectedly, we found that in C6 cells, the enhanced miR-124 or decreased Smad4 expression did not affect the secreted LIF protein levels, while Stat3 and p-Stat3 levels were decreased at the protein level. Furthermore, upon transfection of the C6 cells with siRNAs against Smad4, Stat3 protein was downregulated. We therefore suggest that at least in C6 cells, TGF-β/Smad4 pathway signaling may activate the Jak/Stat3 pathway, possibly by stimulating other activators, such as TNF-α, without depending on enhanced LIF expression. However, exactly which activator was involved should be further addressed. Stat3 is a direct target gene of miR-124 (18). Thus, after restoring miR-124 expression, Stat3 protein levels in C6 cells were downregulated in 2 ways. One way was through direct miR-124 binding to the Stat3 mRNA 3′-UTR, which inhibited Stat3 mRNA transcription. Another way was through miR-124-dependent downregulation of Smad4 protein expression. Therefore, in this study, although we did not evaluate whether the miR-124 controls other target genes, e.g., CDK4 and CDK6, which regulate cell cycle progression, it is plausible that miR-124 partially inhibited C6 cell proliferation by downregulating Stat3 protein expression.
The c-Myc transcription factor is a critical regulator of cell growth, particularly of cell cycle progression from the G1 to S phase. Hence, c-Myc expression levels are tightly related to cell proliferation (37). In early-stage cancers, including glioma, TGF-β suppresses cell proliferation, whereas in later stages, TGF-β promotes cancer cell proliferation by enhancing c-Myc gene expression (38). The molecular mechanisms behing these dual roles in carcinogenesis remain unclear. It has been shown that the c-Myc promoter has several potential SBEs, namely TBE1, TBE2 and TIE. During palatal growth, TGF-β3 promotes palatal mesenchymal cell proliferation by enhancing Smad4 binding to TBE1 and activating c-Myc gene expression (20). As shown in this study, c-Myc protein expression was similarly downregulated after enhancing miR-124 expression or silencing Smad4 in C6 cells. These results indicated that the downregulation of Smad4 may cause decreased c-Myc protein expression following the ectopic overexpression of miR-124 in C6 cells. Controversially, other researchers have presented data showing that an adenovirus encoding Smad4 suppresses glioma cell proliferation (39). Therefore, if Smad4 directly controls c-Myc expression in glioma cells, the associated mechanisms should be investigated in greater detail. As is well-known, Stat3 is abnormally overexpressed in various types of cancer cells, including glioma cells, which induces c-Myc expression and stimulates cell proliferation (40,41). Accordingly, we suggest that after enhancing the miR-124 level, the protein-expression levels of Smad4 and Stat3 are suppressed and eventually the c-Myc protein level becomes downregulated in C6 cells, representing another novel mechanism for explaining how miR-124 inhibits C6 cell proliferation.
In conclusion, in this study, we found that Smad4 is a novel, direct target of miR-124 in C6 cells and demonstrated that upon miR-124 upregulation Smad4 was downregulated, which may be a major cause of the inhibition of C6 cell proliferation, The results presented in this study confirm that miR-124 may be a potential target in the treatment of glioma, as it effectively inhibits glioma cell proliferation by targeting multiple genes.
Acknowledgments
The present study was supported by the National Natural Science Foundation of China (no. 81571199) and the Jilin University Youth Science and Technology Innovation Fund (no. 450060507061).
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