Overexpression of miR‑30c‑5p reduces cellular cytotoxicity and inhibits the formation of kidney stones through ATG5
- Authors:
- Published online on: December 23, 2019 https://doi.org/10.3892/ijmm.2019.4440
- Pages: 375-384
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Copyright: © Wang et al. This is an open access article distributed under the terms of Creative Commons Attribution License.
Abstract
Introduction
Kidney stone formation is a common disease with a high morbidity (1). Kidney stones can lead to the development of severe diseases such as hydronephrosis, renal function impairment or insufficiency if active treatment is not undertaken. In addition, kidney stones have a high occurrence rate (2). Calcium oxalate (CaOx)-induced kidney stones, which are the most common types of kidney stones, account for approximately 60% of all cases of kidney stones in China (3). CaOx-induced kidney stones can be formed by crystal deposits in tubular epithelial cells, a high level of reactive oxygen species (ROS) and the subsequent inflammatory response. Oxidative stress has been recognized as a major factor contributing to the pathogenesis of kidney injury and the formation of kidney stones (4). A previous study also demonstrated that oxidative stress produced by a high concentration of oxalate can lead to tubular injury and stone formation (5).
There is evidence to indicate that renal tubular cell injury induced by CaOx plays a key role in the formation of kidney stones (6); specifically, the increased expression of cellular apoptosis- and apoptosis-associated genes induced by CaOx contribute to kidney stone formation (7). CaOx crystals also induce autophagy through the activation of the ROS pathway in HK-2 cells (8). Randall plaques (RPs) are considered a factor contributing to the formation of idiopathic CaOx-induced kidney stones. In a previous study, in a model of RP-CaOx-induced kidney stones, differentially expressed genes were shown to be associated with the activation of mitogen-activated protein kinase, the Akt/phosphatidylinositol 3-kinase pathway and pro-inflammatory cytokines that can cause renal injury and oxidative stress, which points to their critical roles in the development of CaOx-induced kidney stones (9). Another study also demonstrated that the ROS/Akt/p38 MAPK signaling pathway is activated in the calcium oxalate monohydrate (COM)-induced disruption of tight junction and causes renal cell injury and kidney stone formation (10). Epithelial-to-mesenchymal transition (EMT) induced by CaOx crystals and oxalate in proximal tubular cells has also been shown to lead to kidney injury (11). Thus, it was speculated that multiple pathways are involved in cell damage induced by CaOx.
MicroRNAs (miRNAs or miRs) are critical regulators in various diseases, including kidney stones (12). Claudin-14 gene expression is a key regulator of renal Ca(2+) homeostasis. It has previously been reported that miRNAs can directly regulate the expression of Claudin-14 in human kidney diseases, including nephrolithiasis (13,14). Recently, an integrative analysis of miRNA-mRNA expression profiles in CaOx-induced kidney stones suggested that miRNAs play a critical role in the development of kidney stones (15). Serum and urinary levels of miR-155 are closely related to inflammatory cytokine levels in patients with nephrolithiasis (16). However, the role of miRNAs in the pathophysiology of nephrolithiasis has been less extensively reported. Recent studies have demonstrated that miR-30c-5p (miR-30c) is related to kidney injury induced by ischemia-reperfusion (I/R) (17,18). miR-30c has been shown to regulate the apoptosis of renal tubular epithelial cells by targeting Bnip3L and Hspa5 (19). miR-30c can affect the pathogenesis of diabetic nephropathy by targeting CTGF. Three miR-30 family members, including miR-30c are biomarkers and therapeutic candidates for acute kidney injury (20). Therefore, it was speculated that miR-30c may be involved in the development of renal injury and in the formation of kidney stones.
In this study, the authors aimed to investigate the role of miR-30c-5p in sodium oxalate-induced renal tubular epithelial injury, in order to provide a better understanding of the role of miRNAs in the pathogenesis of kidney stone formation.
Materials and methods
Cells, cell culture and treatment
Human renal tubular epithelial cells (HK-2 cells) were obtained from the American Type Culture Collection (ATCC) and cultured in DMEM-F12 (11320082, Gibco; Thermo Fisher Scientific) containing 10% FBS (16140071, Invitrogen; Thermo Fisher Scientific) and 1% penicillin/streptomycin (15070063, Gibco; Thermo Fisher Scientific) at 37°C with 5% CO2. Sodium oxalate (O0136, Sigma) was diluted to 100, 250, 500, 750 and 1,000 µM by double distilled water. The cells were seeded in a 6-well plate (1×106 cells/well) or 96-well plate (2×104 cells/well) as needed. Subsequently, the cells were incubated with the oxalate solution at various concentrations as described above, and those in the control group were treated with an equal volume of double distilled water. Following incubation for 3 days at 37°C with 5% CO2, the medium was refreshed in each well.
CCK-8 assay
The cells were stimulated by various concentrations (100, 250, 500, 750 and 1,000 µM) of oxalate for 3 days in a 96-well plate (2×104 cells/well) and washed with PBS twice. Subsequently, 10 µl CCK-8 solution (70-CCK801, MultiSciences) mixed with 100 µl fresh medium were added to each well. Following incubation of the cells at 37°C in the dark for 4 days, the absorbance value at a wavelength of 450 nm was detected using the SpectraMax Plus 384 Microplate Reader (PLUS 384, Molecular Devices). A 10 µl CCK-8 solution mixed with 100 µl of the medium served as a negative control.
RNA isolation and RT-qPCR
The cells were washed with PBS and treated with TRIzol regent (15596018, Invitrogen; Thermo Fisher Scientific) at 4°C for 2 min. The RNA was then isolated by chloroform and islpropanol at 4°C. A NanoDrop 8000 spectrophotometer (ND-8000-GL, Thermo Fisher Scientific) was used to determine the concentration of the RNA. The RNA was then reverse transcribed into cDNA using the PrimeScript™ II 1st Strand cDNA Synthesis kit (6210B, Takara). SYBR®-Green PCR Master Mix (4312704, ABI) and the Bio-Rad CFX 96 Touch Real-Time PCR Detection System (1855196, Bio-Rad) were used for RT-qPCR. The sequences of the primers were as follows: ATG5 forward, 5′-AAG CAA CTC TGG ATG GGA TT-3′ and reverse, 5′-GCA GCC ACA GGA CGA-3′ (21); and GAPDH forward, 5′-AGG TCG GTG TGA ACG GAT TTG-3 and reverse, 5′-GGG GTC GTT GAT GGC AAC A-3′. The parameters of RT-qPCR were set as follows: Pre-denaturation at 95°C for 5 min, followed by denaturation at 95°C for 30 sec, annealing at 60°C for 30 sec and extension at 72°C for 30 sec. The 2−∆∆Cq method (22) was used to calculate the relative expression. For the quantification of miR-30c-5p, the One-Step miRNA RT kit (D1801, HaiGene) was used to prepare the cDNA. SYBR-Green qPCR kits (AP01370 and AP02055, HaiGene, China) were used for the RT-qPCR of miR-30c-5p and U6 snRNA. The parameters in RT-qPCR were set as follows: At 95°C for 5 min, 40 cycles at 95°C for 15 sec, at 60°C for 30 sec, and 70°C for 10 sec. The relative expression were calculated by 2−∆∆Cq method (22).
Cell transfection
miR-30c-5p mimic (miR1160713102113-1-5), miR-30c-5p inhibitor (miR20000244-1-5), negative control oligos for mimics (miR0190513015853) and inhibitors (miR2N0000003-1-5) were synthesized by Ribobio Co., Ltd. ATG5 was synthesized by Tsingke Co., Ltd. and cloned into the pcDNA 3.1 vector (V79020, Invitrogen; Thermo Fisher Scientific). The cells were cultured at 4×105 cells/well in 6-well plates and respectively transfected with 100 pmoles of miRNA mimic or inhibitor using Lipofectamine® 2000 (11668019, Invitrogen; Thermo Fisher Scientific) at room temperature after the cells reached 50-60% confluence. Following incubation for 24 h at 37°C, the cells were restored by the addition of fresh culture medium and collected for subsequent functional detections.
Cell apoptosis
The cell apoptotic rate was determined using the Annexin V-FITC/PI kit (70-AP101-100, MultiSciences). Briefly, the cells were cultured in a 6-well plate (2×104 cells/well) for 24 h. Following trypsinization, the cells were collected by centrifugation at 450 × g at 4°C for 5 min and then resuspended in 300 µl of binding buffer and added with 5 µl Annexin V-FITC solution. Following 15 min of incubation at room temperature in the dark, 5 µl propidium iodide (PI) were added to the cells and incubated together for 5 min. Finally, 200 µl binding buffer were added to the cells. The cell apoptotic rate was determined using a FACSCalibur flow cytometer (342973, BD Biosciences) and analyzed using BD FACSCanto™ system software v2.4 (646602, BD Biosciences).
ROS assay
ROS was measured using the Total Reactive Oxygen Species (ROS) assay kit (S0033, Beyotime). Briefly, the cells were seeded in 6-well plates at a density of 8×104 cells/well and collected by trypsinization at 37°C for 2 min and centrifugation at 500 × g for 4 min at 4°C. The cells were then incubated with DCFH-DA (at a final concentration of 10 µM) for 30 min at 37°C. After washing the cells 3 times with PBS solution, the fluorescence intensity of the cells was measured by flow cytometry (342973, BD Biosciences).
Mitochondrial membrane potential (MMP)
MMP (also known as ∆Ψm) was assessed using JC-1 fluorescent dye (C2006, Beyotime). The cells were then cultured at 8×104 cells/well in 6-well plates and incubated with 10 µl of 200 µM JC-1 (final concentration of 2 µM) at 37°C in 5% CO2 for 30 min. Subsequently, the cells were washed twice with 1 ml cooled 1X JC-1 buffer. The cells were then centrifuged at 600 × g for 5 min at 4°C, and analyzed on a flow cytometer (342973, BD Biosciences) at a 525 nm wavelength and 490 nm wavelength for the detection of JC-1 polymers and monomers, respectively.
Determination of lactate dehydrogenase (LDH)
The cells were cultured in 96-well plates, and the medium in each well was then collected and centrifuged at 1,000 × g, at 4°C for 10 min. The LDH in the supernatant was measured using a Cytotoxicity Detection kit (LDH, 11644793001). Subsequently, 100 µl reaction reagent were mixed with 100 µl supernatant and incubated for 30 min at room temperature. The absorbance was then read at 490 nm using a multimode reader (PLUS 384, Molecular Devices). The data were normalized to those of the cells in control group.
Measurement of oxidative stress
The level of malondialdehyde (MDA) was determined using the Lipid Peroxidation (MDA) assay kit (MAK085, Sigma). Briefly, 1×106 cells were homogenized by 300 µl MDA lysis buffer containing 3 µl BHT. The samples were centrifuged at 13,000 × g, 4°C for 10 min. A total of 200 µl of the supernatant was mixed with 600 µl of the TBA solution, and following incubation at 95°C for 60 min, the mixture was cooled down on ice for 10 min. Subsequently, 200 µl of each reaction mixture was pipetted into a 96-well plate and analyzed at a 532 nm wavelength using a multimode reader (PLUS 384, Molecular Devices).
In addition, the activities of the antioxidant enzymes, super oxide dismutase (SOD) and catalase (CAT), were measured using the Total Superoxide Dismutase assay kit (S0109, Beyotime) and Catalase assay kit (S0051, Beyotime). The cells were cultured at 8×104 cells/well in 6-well plates and then homogenized in 0 5 ml buffer solution. The cells were centrifuged at 600 × g, 4°C for 10 min to measure the activities of SOD and CAT in the supernatants. For SOD activity, 20 µl homogenates were mixed with 160 µl NBT reagent and 20 µl reaction reagent at 37°C and held for 30 min. An equal volume of detection buffer mixed with 160 µl NBT reagent and 20 µl reaction reagent served as the blank control. The level of SOD was determined at a 560 nm wavelength using a multimode reader (PLUS 384, Molecular Devices). For CAT activity, 10 µl homogenates were mixed with 10 µl hydrogen peroxide reagent and 30 µl hydrogen peroxide detection buffer. Subsequently, 40 µl hydrogen peroxide detection buffer mixed with 10 µl of 250 mM hydrogen peroxide reagent served as the blank control. Following incubation at 25°C for 5 min, 450 µl of stopping solution were added to the mixture to terminate the reaction, and the mixture was then detected at a 240 nm wavelength using a multimode reader (PLUS 384, Molecular Devices).
Crystal-cell adhesion assay
The treated cells were cultured in a 6-well plate. As previously described, the cells with full confluence were incubated in DMEM containing 100 µg/ml calcium oxalate monohydrate (COM, C0350000, Sigma) for 10 min at 37°C in a humidified atmosphere with 5% CO2 (23). The cells were then washed by PBS twice to remove residual COM crystals. The images of the crystals were captured under a microscope (ECLIPSE TS100, Nikon). A total of 10 randomized high-power fields per well were selected and the numbers of adherent crystals in each field were counted. The representative images were selected, at the same scale, and the area of the field selected by the square was equal. The crystal numbers in different groups were standardized with the control group.
Bioinformatics and dual-luciferase reporter assay
TargetScan7.2 (http://www.targetscan.org/vert_72/) was applied to predict the target gene of miR-30c-5p. DNA sequences of ATG5-WT and ATG5-MUT were obtained from Tsingke Co., Ltd. and separately constructed into the luciferase reporter gene vector (pmirGLO, E1330, Promega) to construct luciferase reporter plasmids. Renilla luciferase vector (E6911, Promega, USA) was co-transfected into the cells as a reporter control. Briefly, the cells cultured in 96-well plates were transfected with luciferase reporter plasmid (0.05 µg/well) or co-transfected with luciferase reporter plasmid and miR-30c-5p mimic (15 nM). Following transfection for 24 h, the cells were analyzed for luciferase activity using the Dual-Glo® Luciferase assay system (E2920, Promega) and Microplate Luminometer (11300010, Berthold). The luciferase activity was normalized by firefly luciferase activity in comparison with Renilla luciferase activity. For each transfection, the luciferase activity was averaged from 6 replicates.
Statistical analysis
The data are presented as the means ± SD. Differences between 2 groups were assessed by one-way ANOVA, followed by Dunnett's post hoc test (version 19.0 software, SPSS, Inc.). A P<0.05 was considered to indicate a statistically significant difference.
Results
Effect of miR-30c-5p on oxalate-induced cytotoxicity in HK-2 cells
The viability of HK-2 cells stimulated by oxalate at concentrations of 0, 100, 250, 500, 750 and 1,000 µM was determined, and the results revealed that oxalate reduced cell viability in a concentration-dependent manner (Fig. 1A). The results of RT-qPCR also revealed that the expression level of miR-30c-5p was downregulated in HK-2 cells exposed to 750 µM oxalate (Fig. 1B).
Furthermore, miR-30c-5p mimic and inhibitor were successfully transfected into the HK-2 cells to upregulate and downregulate the level of miR-30c-5p, respectively (Fig. 1C). The results of flow cytometry indicated that oxalate increased the apoptotic rate of the HK-2 cells, which however, was reversed by transfection with miR-30c-5p mimic and was enhanced by transfection with miR-30c-5p inhibitor, respectively (Fig. 2A and B). Oxalated stimulation also increased the activities of LDH and MDA, and these effects were reverse by transfection with miR-30c-5p mimic and aggravated by transfection with miR-30c-5p inhibitor (all P<0.001, Fig. 2C and D). However, the changes in SOD and CAT activities exhibited opposite results (all P<0.001, Fig. 2D). JC-1 is used as an indicator of MMP (∆Ψm) in a variety of cell types, and when the ∆Ψm is high, JC-1 accumulates in the mitochondrial matrix and forms polymers, while at a low ∆Ψm, JC-1 is unable to accumulate in the mitochondrial matrix and thus forms monomers. JC-1 polymers and monomers can be respectively detected at a wavelength of 585/590 and 514/529 nm. In this study, the levels of ROS and MMP were determined by flow cytometry, and the results revealed that the increase in ROS production and the decrease in MMP induced by oxalate were reversed by the overexpression of miR-30c-5p, but were enhanced by the inhibition of miR-30c-5p (Fig. 2E and F). Crystal-cell adhesion assay also demonstrated that the crystal number increased significantly in the HK-2 cells exposed to oxalated, and this increase was abolished by transfection with miR-30c-5p mimic, whereas it was promoted by transfection with miR-30c-5p inhibitor (all P<0.001, Fig. 3).
ATG5 is directly targeted and regulated by miR-30c-5p
TargetScan7.2 was used to predict the binding site for miR-30c-5p at position 707-714 of the ATG5 3′UTR (Fig. 4A), and dual-luciferase reporter assay was performed to verify the association between miR-30c-5p and ATG5. The results revealed that the luciferase activity of the HK-2 cells transfected with ATG5-WT reporter plasmid was significantly decreased by miR-30c-5p (P<0.001), while no obvious change was observed in the cells transfected with the ATG5-MUT reporter plasmid (Fig. 4B). The results of RT-qPCR demonstrated that the overexpression of miR-30c-5p decreased the expression level of ATG5, while ATG5 expression in the mimic + ATG5 group was significantly higher than that in the mimic + NC group (Fig. 4C).
miR-30c-5p regulates the oxalate-induced cytotoxicity in HK-2 cells by targeting ATG5
Functional rescue experiments were performed to confirm the function of miR-30c-5p in targeting ATG5. Flow cytometry was carried out to determine the cell apoptotic rate and the levels of ROS and MMP in the HK-2 cells exposed to oxalate. Additionally, the relative activities of LDH, MDA, SOD and CAT were determined. The results demonstrated that the overexpression of ATG5 ʻrescuedʼ the decrease in the cell apoptotic rate, the ROS level, the activities of LDH and MDA and crystal number, the increase in SOD and CAT activities and the upregulated level of MMP induced by transfection with miR-30c-5p mimic (all P<0.001, Fig. 5). Crystal-cell adhesion assay was performed to determine the crystal-forming ability, and the data indicated that transfection with miR-30c-5p mimic reduced the crystal number in the HK-2 cells exposed to oxalate, whereas the overexpression of ATG5 reversed the effects induced by transfection with miR-30c-5p mimic (all P<0.001, Fig. 6).
Discussion
Oxalate is an end product of metabolism, and a high level of oxalate can lead to hyperoxaluria and even in the formation of CaOx-induced kidney stones (24). In this study, it was found that oxalate at various concentrations led to a decrease in the viability of human renal tubular epithelial cells, and such a result was consistent with the findings of previous studies (25,26). A previous study reported that miR-30c alleviated diabetic nephropathy via the Snail1/TGF-β1 pathway (27). Of note, it was found that miR-30c-5p was downregulated by oxalate stimulation, suggesting that miR-30c-5p may be involved in oxalate-induced cell injury.
Apoptosis is a type of programmed cell death, and a previous study suggested that the reduction in cell viability induced by CaOx was associated with cell apoptosis (28). Moreover, cell injury induced by oxalate occurs due to apoptosis (29). In the early stages of apoptosis, phosphatidylserine (PS) is exposed outwards to the cell surface. FITC-labeled Annexin V selectively binds to PS and can be detected by flow cytometry. MMP is another indicator of apoptosis, and a low MMP (∆Ψm) causes JC-1 polymers to turn into monomers when apoptosis occurs. JC-1 monomers can be detected at a wavelength of 514/529 nm, while JC-1 polymers can be detected at a wavelength of 585/590 nm. Thus, this study also detected the apoptotic rate and MMP by flow cytometry. It has previously been reported that miR-30c is closely related to cell apoptosis. For example, miR-30c regulates the apoptosis and proliferation of renal tubular epithelial cells (19), and a myocardial cell model (30). This study indicated that miR-30c-5p participates in cell apoptosis induced by oxalate.
It has been demonstrated that ROS are produced during CaOx-induced nephrolithiasis (31). The production of ROS is controlled under normal conditions; however, it is increased when the conditions change, such as for example, a high concentration of oxalate and crystals of CaOx/calcium phosphate (CaP) can induce excessive ROS production in renal epithelial cells (32). ROS are an important parameter involved in oxidative and endoplasmic reticulum dysfunction of cells (33). Therefore, in this study, the effect of the miR-30c-5p on the ROS level was investigated in HK-2 cells exposed to oxalate. The level of LDH released by cells can indicate cell oxidative damage (34). As a product of lipid peroxidation, MDA can be induced by oxidative stress and reflects the degree of oxidative injury. SOD is an antioxidant enzyme, and is involved in the antioxidant system. CAT can neutralize excessive ROS production and catalyzes H2O2 into H2O and O2 (35). Thus, the levels of LDH, MDA, SOD and CAT were determined, and the results revealed that oxalate causes severe oxidative dysfunction, while miR-30c-5p mimic can relieve such an injury induced by oxalate. Taken together, the findings of this study demonstrated that miR-30c-5p is potentially a critical regulator of sodium oxalate-induced kidney stones, and such a finding was further confirmed by crystal-cell adhesion assay. These results suggested that the overexpression of miR-30c-5p relieves cell cytotoxicity and inhibits the formation of sodium oxalate-induced kidney stones.
miRNAs play important roles in various diseases by targeting and regulating mRNAs. In this study, ATG5 was targeted by miR-30c-5p. There is evidence to indicate that ATG5 is involved in the occurrence and development of cell apoptosis; for example, knocking down ATG5 can alleviate the increase in cell apoptosis and apoptosis-associated protein expression induced by hypoxia and reoxygenation (36). Previous studies have also demonstrated that ATG5 promoted cell apoptosis by activating caspase-8 (37), and that ATG5 is involved in the apoptosis of human cardiomyocytes (38) and colorectal cancer cells (39). The knockdown of ATG5 upregulates the apoptotic cell death of human vaginal epithelial cells (40); moreover, ATG5 suppresses cellular proliferation and induces the apoptosis of DF-1 cells (41). In addition, the inhibition of ATG5 can decrease oxidative stress-based cytotoxicity in osteosarcoma cells (42). The damage to renal tubular cells is a major factor contributing to COM crystal adhesion (43). A previous study demonstrated that the inhibition of the autophagy pathway alleviated the oxidative injury to renal tubular cells and reduced CaOx-induced crystal deposition via the p38 signaling pathway (44). Therefore, as an autophagy-related gene, ATG5 is directly regulated by miR-30c-5p and is involved in renal cell oxidative stress and crystal depositions induced by oxalate. To conclude, in this study, the molecular mechanisms underlying the function of miR-30c-5p in oxalate-induced HK-2 cell injury was examined in in vitro experiments; however, these mechanisms need to be confirmed by future in vivo studies.
In conclusion, this study demonstrates that miR-30c-5p is downregulated in HK-2 cells exposed to oxalate, and that miR-30c-5p mimic can alleviate the oxidative stress, cell injury and crystal-cell adhesion caused by a high concentration of oxalate through the regulation of ATG5.
Acknowledgments
Not applicable.
Funding
This study was supported by the 2018 Medical Scientific Research Plan Project of Dalian City (1811117).
Availability of data and materials
The analyzed datasets generated during this study are available from the corresponding author on reasonable request.
Authors' contributions
XW and BG made substantial contributions to the conception and design of the study. YZ, SH, HC, CC and LJ were involved in data acquisition, data analysis and interpretation. XW and BG were involved in the drafting of the article or critically revising it for important intellectual content. All authors have read and approved the final version of the manuscript to be published. All authors agree to be accountable for all aspects of the work in ensuring that questions related to the accuracy or integrity of the work are appropriately investigated and resolved.
Ethics approval and consent to participate
Not applicable.
Patient consent for publication
Not applicable.
Competing interests
The authors declare that they have no competing interests.
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