Identification of a new p53 responsive element in the promoter region of anillin
- Authors:
- Published online on: March 4, 2020 https://doi.org/10.3892/ijmm.2020.4527
- Pages: 1563-1570
Abstract
Introduction
Anillin, an actin binding protein, serves crucial roles in cytokinesis. Anillin forms scaffolds upon which the actomyosin contractile ring forms and therefore functions as a central factor of the ingression and activity of the cleavage furrow (1–3). The transcription of the anillin (ANLN) gene locus and the resultant protein expression are cell cycle regulated (4). Furthermore, there are marked changes in localization during the cell cycle (5). In interphase cells, the anillin protein is restricted to the nucleus. However with the dissolution of the nuclear membrane at the onset of mitosis, anillin becomes phosphorylated (2) and relocates to the cell cortex, associating with the cell membrane prior to being accumulated at the developing cleavage furrow (5). Here, it serves as a scaffold, associating with actin (6), septins (7) myosin II (8) and also Rho like signaling complexes, including racGAP components (9) and a range of other proteins (10). The ubiquitin-mediated degradation of anillin, occurring at the end of mitosis, is facilitated by anaphase-promoting complex (11). The importance of anillin and anillin-associated proteins in cytokinesis has been demonstrated in several studies, including examining the effect of anillin mutations on cytokinesis (2,3,12). However, other functions of anillin in the nucleus or in association with other actomyosin activities including migration, cannot be excluded (13).
The coordinated and efficient execution of mitosis and cell division are important events that militate against oncogenic events associated with inaccurate or incorrect chromosome segregation and the mechanics of cell division (14). Therefore, it is not surprising that alterations in anillin expression have been described in neoplasia. Hall et al (15) performed global analyses of anillin in diverse samples of normal and diseased tissue, the results of which revealed that anillin overexpression occurred in neoplasia. Anillin mRNA is expressed at increased levels in human tumors. Furthermore, in many different types of tumor, a progressive increase in anillin mRNA levels has been associated with tumor spread and stage: For example, anillin is overexpressed in breast tumors, notably at the transition from in situ to invasive disease (16). Similarly, anillin has been demonstrated to be overexpressed in gastric carcinoma (17), pancreatic carcinomas (18), hepatocellular melanoma (19) and in head and neck squamous carcinoma (20). Further data from Suzuki et al (21) demonstrated anillin overexpression in lung cancer, which was associated with anillin dysfunction and perturbations of Rho and AKT signaling.
The highly prevalent overexpression of anillin in multiple different types of tumors and its association with tumor progression is unusual and requires investigation. The increased expression of anillin is not a consequence of increased tumor growth fraction and it should be noted that the highest levels of anillin mRNA occur within the adult central nervous system, a tissue characterized by a non-proliferative phenotype (15). Furthermore, Mirza et al (22) demonstrated that a number of genes are repressed by p53, including anillin. Given the prevalence of p53 pathway defects in human cancer and previous evidence demonstrating that putative p53 binding sites are located within the 5′-untranslated region of the ANLN gene, the present study hypothesized that the tumor-associated loss of p53 function may negate its normally repressive effects on anillin expression. This would be consistent with the prevalence of anillin deregulation and with the association of increased anillin expression with tumor progression. The present study assessed the role of p53 in the regulation of anillin and demonstrated that anillin mRNA and protein may be regulated in a p53-dependent manner.
Materials and methods
The cancer genome Atlas (TCGA) database analysis
Anillin overexpression in patients with colorectal cancer was analyzed using data obtained from TCGA database (https://portal.gdc.cancer.gov/genes/ENSG00000011426). Anillin protein expression were analyzed in colorectal (n=239) or breast carcinomas (n=539) cases; normal colon (n=19) or breast tissues (n=61) were included as controls.
Bioinformatics
The upstream 3 kb region of the initiating ATG sequence was evaluated using UCSC Genome Browser software (http://www.genome.ucsc.edu) (23). Additionally, putative p53 responsive elements (REs) were identified using the online transcription factor prediction tool, Genomatix (http://www.genomatix.de/; Interxon Bioinformatics Germany GmbH).
Cell culture and transfection
p53 wild-type and isogenic p53 null HCT116 cells were donated by Dr B. Vogelstein (Oncology Center, Johns Hopkins University School of Medicine) and authentication was performed using the GenePrint10 system (Promega Corporation; cat. no. B9510). The MCF7 cell line was purchased from the American Type Culture Collection (cat. no. ATCC® HTB-22™). Cells were maintained at 37°C in McCoy’s 5A medium (Thermo Fisher Scientific, Inc.) under standard conditions and routinely tested for mycoplasma contamination using the MycAway-Color One-Step Mycoplasma detection kit [Yeasen Biotechnology (Shanghai) Co., Ltd.; cat. no. 40611ES60]. The full-length (−1 to −3,000), mutant A (−1,721 to −3,000) and mutant B (−2,105 to −3,000) constructs were cloned into pGL3 luciferase reporter vectors (cat. no. E1751; Promega Corporation). The transient transfection of these plasmids was then conducted for 48 h prior to western blotting to determine the transfection efficiency. HCT116 cells was subsequently performed using 24-well plates. Cells were grown at a density of ~1x105 cells/well in a 24-well plate 1 day prior to transfection. For each well, HCT116 p53+/+ cells were co-transfected with 100 ng luciferase reporter plasmid and 20 ng β-galactosidase plasmid. HCT116 p53−/− cells were then co-transfected with 100 ng luciferase plasmids, 20 ng β-galactosidase plasmids and wild-type or mutant p53 (R175H or R248W) plasmids using GeneJuice® (Merck KGaA) according to the manufacturer’s protocol.
Western blot analysis
HCT116 p53+/+ or HCT116 p53−/− cells were treated with 0.5 μM doxorubicin for 0, 4, 12, 18, 24, 36 and 48 h. Cells were then lysed in RIPA buffer (50 mM Tris-base, 150 mM NaCl, 1% Triton X-100, 0.5% sodium deoxycholate, 0.5% SDS, 2 mM EDTA) and total protein was collected at 12, 18. 24 and 48 h time points. A total of 50 μg protein was electrophoresed on 8% SDS-PAGE gels, and semi-dry transferred to a PVDF membrane. Blots were then blocked in 2.5% milk for 30 min at room temperature, followed by incubation with either anillin S4 or mouse monoclonal p53 DO-1 antibodies (Santa Cruz Biotechnology, Inc.; cat. no. sc-126; 1:1,000) at 4°C overnight. A goat anti-mouse horseradish peroxidase-conjugated IgG secondary antibody (Dako; Agilent Technologies, Inc; cat. no. P044701-2; 1:2,000) was then incubated with the PVDF membranes for 1 h at room temperature. ECL™ Western Blotting Detection Reagent (GE Healthcare Life Sciences) was then used to visualize the bands. Expression was quantified using ImageJ2 software (National Institutes of Health).
Reverse transcription-quantitative polymerase chain reaction (RT-qPCR)
Total RNA (2 μg) extracted from HCT116 p53+/+ and HCT116 p53−/− cells was reverse transcribed using M-MLV reverse transcriptase and random primers (Thermo Fisher Scientific, Inc.). qPCR was performed using SYBR-Green (cat. no. 04707516001; Roche Diagnostics) and the following gene-specific primers: Anillin, forward 5′-GAAAAGGTGACCGAAAACCA-3′, reverse 5′-TTTCGTCATTTCGCATTCAG-3′. Anillin mRNA level was normalized to β-actin (forward 5′-AGGCACCAGGGCGTGAT-3′, reverse 5′-GCCCACATAGGAATCCTTCTGAC-3′). Amplification was performed in a LightCycler® 480 (Roche Diagnostics) using the following protocol: Initial denaturation at 95°C for 5 min, followed by amplification at 95°C for 10 sec and 72°C for 30 sec for 40 cycles, and finally melting curve analysis at 95°C for 5 sec, 65°C for 1 min followed by cooling at 4°C. An Opticon® 2 continuous fluorescence detection system equipped with Opticon® Monitor v2.02 software was also employed. The relative quantification cycle (Cq) method (24) was applied to analyze the relative expression of anillin.
Plasmid construction
Genomic DNA was prepared from HCT116 p53+/+ cells for the construction of ANLN promoter-driven luciferase reporter plasmids. Reporter plasmids containing −1,318 (encoding the promoter region from −1,318 to −1, which included potential binding sites A and B), A (encoding the promoter region from −1,310 to −1, with a deletion from −901 to −561, excluding the binding site of B) and B (encoding the promoter region from −921 to −1, with a deletion from −661 to −561, excluding binding site A) regions were constructed into the XhoI/HindIII restriction sites of the pGL3-basic vector (Promega Corporation).
Chromatin immunoprecipitation (ChIP)
MCF7 cells were cultured and treated as aforementioned. Chromatin was sheared into 300–600 bp fragments using a bioruptor (Diagenode, Inc.) for 4 rounds of 10 cycles of 30 sec ON/30 sec OFF at 4°C. Fragmented chromatin was centrifuged at 500 x g for 10 min at 4°C to pellet the remaining insoluble material and the supernatant was pre-cleared overnight at 4°C with 600 μl magnetic protein-G Dynal beads (Thermo Fisher Scientific, Inc.). The fragmented chromatin (50 μl) was reserved as an input control. The remaining chromatin fragments were precipitated overnight at 4°C with magnetic protein-G beads bound with antibodies. For each ChIP reaction, either 10 μg anti-p53 DO1 antibody (Santa Cruz Biotechnology, Inc.; cat. no. sc-126; 1:1,000), 10 μg mouse IgG immunoglobulin (1:2,000; cat. no. R0480; Dako; Agilent Technologies, Inc.) or no antibody was added and incubated with 600 μl sheep anti-mouse IgG protein G (Dako; Agilent Technologies, Inc.) beads at 4°C overnight. Beads were washed 8 times with RIPA buffer (50 mM HEPES at pH 8.0, 500 mM EDTA at pH 8.0, 10% NP-40, 10% Deoxycholate, 8 M LiCl, protease inhibitor cocktail) followed by 1 wash in 1 ml 1X TE buffer. Each reaction was transferred into a fresh 1.5 ml Eppendorf tube, and centrifuged at 1,000 x g for 3 min at 4°C. Immune complexes were eluted with 50 μl elution buffer [10 mmol/l Tris-Cl (pH 8.0), 1% SDS, 5 mmol/l EDTA] at 65°C for 10 min and pelleted at 14,000 x g for 30 sec. Supernatant was then transferred into a fresh 1.5 ml Eppendorf tube prior to elution with 120 μl elution buffer. Cross-links were reversed by incubating at 65°C overnight. Eluted material was purified using a PCR clean up kit (Qiagen, Inc.). Promoter regions containing the potential p53 binding sites of A and B were amplified with GoTaq® DNA polymerase (cat. no. M3001; Promega Corporation) using the following site specific primers: p53a forward, 5′-GGAGGAATAGTTCTGTTTTG-3′; p53a reverse, 5′-TCTCCTGCTTATTCTTTGTA-3′; p53b forward, 5′-AAATTGTGCATGAACGCTT-3′; p53b reverse, 5′-TTGGCCTTCAGTAGCTTTG-3′; p53cd forward, 5′-GGGTCCCAGTTCAAGCAAT-3′. Amplification was performed in an Eppendorf Master cycler thermal cycler using the following temperature protocol: 95°C for 5 min, followed by 95°C for 30 sec, 55°C for 1 min, 72°C for 3 min 10 sec for 25 cycles, and then 72°C for 5 min. PCR products were analyzed via electrophoresis on 1.5% agarose gels and visualized using ethidium bromide.
Luciferase reporter assay
HCT116 p53+/+ and HCT116 p53−/− cells were cultured, treated and transfected as aforementioned. At 24 h post-transfection, cells were lysed in 1X passive lysis buffer on a shaker for 15 min at room temperature. Cells were pelleted via centrifugation at 14,000 x g for 5 min at 4°C. Supernatants were subsequently transferred into corresponding tubes. Luciferase substrate stock solution was thawed to room temperature (22–26°C) and the required quantity was diluted 1:2 in ddH2O, and placed in foil-wrapped Sterilin™ (Thermo Fisher Scientific, Inc.) prior to use. A Luciferase Assay System (Promega Corporation; cat. no. E1500) was used and β-galactosidase (Roche Diagnostics; cat. no. 11291963103) activity was detected according to the manufacturers’ protocols. The reaction was incubated at 37°C for ~30 min until the color turned dark red. The activity was then assayed at 570 nm using a plate reader (Bio-Rad Laboratories, Inc.). Luciferase activity was normalized to Renilla luciferase activity (cat. no. E2231; Promega Corporation).
Statistical analysis
An unpaired Student’s t-test was performed to compare the differences between two groups. A two-way analysis of variance followed by Tukey’s multiple comparisons post hoc test was performed to compare the differences between the fold changes of anillin promoter luciferase activities with respect to p53 responsiveness. Statistical analysis was performed and graphs were generated by GraphPad prism v6.01 software (GraphPad, Software, Inc.). Data are presented as mean ± standard deviation of triplicate cultures and are representative of 3 independent experiments. P<0.05 was considered to indicate a statistically significant difference.
Results
Anillin serves as a biomarker of colorectal or breast cancer
Previous studies have demonstrated the overexpression of anillin in various types of tumors and its association with disease progression (16–19). To confirm its role as a biomarker, the present study assessed the expression of anillin using the TCGA database. The results revealed that anillin was highly expressed in the colorectal adenocarcinoma cohort (Fig. 1A; n=237) and the breast carcinoma cohort (Fig. 1B; n=593) when compared with the respective normal colon, rectum or breast tissues. Furthermore, its expression was increased in colorectal (Fig. 1C) or breast (Fig. 1D) tumors where tumor progression had been observed.
Bioinformatics analysis and ChIP identification of the putative p53 REs in the ANLN upstream 3 kb promoter
The classic p53 consensus DNA binding sequence contained the following: A half site of 5′-RRRCWWGYYY, a spacer consisting of 0–25 bases and a second half site of RRRCWWGYYY-3′, where R represents purine, W represents adenine or thymidine, Y represents pyrimidine, G represents guanine and C represents cytosine. The 3 kb sequence located upstream of the ANLN promoter sequence was analyzed using Genomatix software, an online transcriptional factor prediction system. According to the classic p53 consensus DNA binding sequence, 4 putative p53 binding sites were identified and located (Fig. 2A): p53 RE-a, p53 RE-b, p53 RE-c and p53 RE-d. The sequences, the strand on which they were located and the start and ending positions of each p53 binding site are presented in Fig. 2B. By performing ChIP, the present study elucidated that sites p53 RE-a and -b were capable of binding p53 (Fig. 2C). However, other two putative binding sites, p53 RE-c/d, were not identified by the ChIP assay (Fig. S1). Mirza et al (22) previously demonstrated via a ChIP assay that RE-b was capable of binding p53 and repressed anillin expression. To further define the functionality of the anillin promoter with respect to p53 responsiveness, the present study constructed a series of luciferase reporter plasmids containing activated or mutated RE-a and/or RE-b (Figs. 2D and S2). Wild-type or p53 null counterparts containing either activated or mutated binding sites were subsequently transfected into the HCT116 cells. The results revealed that each site acted in cis to inhibit luciferase activity following doxorubicin treatment in a p53-dependent manner (Fig. 2E). By contrast, the inhibition of anillin promoter luciferase activities was negated by mutating the binding sites in the reporter plasmids (Fig. S2). In subsequent experiments, the constructs were co-transfected into p53-null cells with mutant or wild-type p53 constructs (Figs. 2F and S3). It was demonstrated that exogenous wild-type p53 repressed RE-a/b-containing luciferase constructs, while the mutants activated luciferase activity (Fig. 2F).
Repression of anillin mRNA and protein levels by the doxorubicin-induced accumulation of p53 in HCT116/p53+/+ cells
To investigate whether anillin was regulated during apoptosis, HCT116/p53+/+ cells were treated with doxorubicin to induce DNA damage. The results of the qPCR analysis revealed that anillin mRNA expression in HCT116/p53+/+ cells was inhibited at 4 h after doxorubicin treatment (Fig. 3A). To confirm this result, cell lysates were collected at different time points following doxorubicin treatment and subjected to western blot analysis. The results revealed that the expression of anillin was downregulated in a time-dependent manner following doxorubicin treatment (Fig. 3B; top row). In addition, p53 expression was significantly increased following doxorubicin treatment (Fig. 3B; middle row), indicating that p53 may be involved in the regulation of anillin expression. Therefore, HCT116/p53−/− cells were treated with doxorubicin, following which qPCR and anillin western blot analysis were performed. Neither the qPCR nor western blot analysis assays revealed any alterations in anillin expression following doxorubicin treatment in the HCT116/p53−/− cells (Fig. 3C and D). These data indicated that p53 was a key transcription factor that regulated anillin expression during apoptosis.
Anillin expression is inhibited in p53-transfected HCT116/p53−/− cells
To additionally determine whether anillin functions a transcription factor to p53, 2 p53 mutants that were deficient in DNA-binding were employed. HCT116/p53−/− cells were transfected with wild-type or mutant p53 plasmids. The results of the qPCR analysis demonstrated that anillin mRNA overexpression was inhibited using the p53 wild-type construct. However, neither of the mutant constructs used in the present study (R175H or R248W) exerted an effect in HCT116/p53−/− cells (Fig. 4A). Additionally, anillin protein levels were suppressed by overexpressing p53 using the wild-type construct in HCT116 p53 null cells. However, no effect was observed in cells transfected with R175H or R248W p53 mutant constructs (Fig. 4B). These data indicated that p53 may regulate anillin transcription by directly binding to the ANLN promoter.
Discussion
By fulfilling the criteria set out by Riley et al (25), in which state that the p53 binding motif is composed of a half-site RRRCWWGYYY followed by a spacer (0–21 bp) and subsequently a second half-site RRRCWWGYYY sequence, the present study demonstrated that anillin may be a p53 responsive gene. This has relevance in 2 contexts: Firstly, the frequent overexpression of anillin in neoplasia and its association with tumor progression may be a consequence of p53 tumor suppressor gene loss of function, which itself is highly prevalent in human neoplasia and associated with tumor progression. This model was based on the suggestion that anillin was transcriptionally repressed by p53 and that p53 mutations may reverse this effect. The present data is consistent with the previously described model (24), since the potent transcriptional repression of the anillin promoter was induced by wild-type p53. This may explain why anillin overexpression is common in neoplasia and frequently associated with tumor progression.
The second inference made from the data of the present study is associated with the roles of p53 in cytokinesis. Cell cycle regulation of p53 expression has been well documented, despite the physiological role of this process being unclear (26). Previous studies have indicated the role of p53 in interphase and mitosis (27,28). It has been established that cytokinesis failure initiates the p53 pathway (29). However, emerging reports have demonstrated that certain p53 regulated genes have roles in cytokinesis, including protein regulator cytokinesis 1 (30,31). In addition, the p53-mediated regulation of the LIM domain kinase (LIMK2) splice variant LIMK2b links cell cycle checkpoint control with actin dynamics (32). Changes in cell shape are key processes in the cell cycle, and this is disrupted in incidences of neoplasia. Given the role of anillin as an actin interactor, it is hypothesized that the p53 dependent regulation of ANLN may modulate cytokinetic processes under conditions of cellular stress. Other studies have proposed an association between the p53 response and Septins, which are proteins that interact with anillin and have roles in cytokinesis (33,34).
Recent data have suggested associations between p53 and stem cell function and, in particular, between p53 and polarized asymmetric cell division (35,36). Anillin also serves roles across phylogeny in asymmetric cell divisions. In the development of Caenorhabditis elegans, protease-activated receptor 4 protein regulates polarity by altering the anillin scaffold and hence, actin and myosin dynamics (37). Similarly, anillin is crucial for the asymmetric divisions that give rise to polar bodies in nematode oocyte development (38). Asymmetric divisions are central to all eukaryote cell development (39), particularly in stem cell function. Evolutionary conservation of the structural and regulatory elements is also crucial for the determination of polarity (40).
Finally, the role of p53-regulated anillin expression may indicate the activities of anillin that are not involved with cytokinesis. Although the focus of the studies investigating anillin has been its significant roles in cytokinesis, substantial anillin protein levels have been observed in the interphase nucleus. While this may be a storage form of the protein (1,41), it may also indicate that anillin serves roles in regulating aspects of nuclear actin function (42). It is also notable that other cytokinesis proteins, including Pav and Tum, have important nuclear roles in the regulation of Wnt signaling (43). In addition to anillin, these proteins also interact with Rac GTPase-activating protein 1 (44). These observations, and the results of the present study, indicate that the scope of anillin function may be greater than previously considered.
Supplementary Information
Acknowledgements
The authors would like to thank Dr B. Vogelstein at Oncology Center, Johns Hopkins University School of Medicine for providing the p53 wild-type and isogenic p53 null HCT116 cells. The results shown in this manuscript are in part based upon data generated by the TCGA Research Network: https://www.cancer.gov/tcga.
Funding
This project was supported in part by Shanghai Pujiang Program (grant no. 17PJ1405500 to JM), Shanghai Natural Science Foundation (grant no. 17ZR1415600 to JM), and National Natural Science Foundation of China (grant no. 81700134 to JM).
Availability of data and materials
All data generated or analyzed during this study are included in this published article.
Authors’ contributions
JM designed and performed the experiments, analyzed the data and wrote the manuscript. XL, RM, WL, XS and PL drafted parts of the manuscript. HZ conceived and supervised the project, designed the experiments and wrote the manuscript. All authors read and approved the final manuscript.
Ethics approval and consent to participate
Not applicable.
Patient consent for publication
Not applicable.
Competing interests
The authors declare that they have no competing interests.
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