Upregulation of FGFR1 expression is associated with parathyroid carcinogenesis in HPT-JT syndrome due to an HRPT2 splicing mutation
- Authors:
- Published online on: May 29, 2014 https://doi.org/10.3892/ijo.2014.2477
- Pages: 641-650
Abstract
Introduction
Hyperparathyroidism is characterized by calcium-insensitive hyper-secretion of parathyroid hormone and the development of tumors from parathyroid cells. The majority of tumors in primary hyperparathyroidism are sporadic, but ~5% are associated with hereditary cancer syndromes (1). Cases of primary hyperparathyroidism (80–85%) are due to parathyroid adenomas, and 10–15% are attributed to primary chief cell hyperplasia (2).
A molecular analysis of parathyroid hyperplasia, adenoma and carcinoma has been reported (3), and cyclin D1, calcium sensing receptor and vitamin D receptor genes are known to play a role in tumor development in parathyroid glands (4,5). Overexpression of cyclin D1, a key regulator of the cell cycle, has been implicated in the pathogenesis of 20–40% of sporadic parathyroid adenomas (6). In addition, loss of chromosome segment 1p is strongly associated with parathyroid adenoma and carcinoma, but not with hyperplasia (2,3,7,8). Other findings relevant to parathyroid pathogenesis are mutations of the HRPT2 gene (1q24-32) or MEN gene (11q13) (9,10). Germline mutations of the HRPT2 gene have been described in parathyroid carcinoma, especially in HPT-JT syndrome (11–14), and have been implicated in the development of a high proportion of parathyroid carcinomas (2). Furthermore, microarray profiling has been used to examine different types of parathyroid disease, and these have proved to be excellent objects for understanding the molecular pathogenesis of the parathyroid gland (3,4). However, the molecular events involved in the formation of parathyroid tumors, especially in HPT-JT syndrome, are poorly understood. We therefore generated gene expression profiles of the main types of primary parathyroid disease: sporadic parathyroid adenoma, and parathyroid carcinoma in HPT-JT syndrome due to an HRPT2 splicing mutation (hereinafter referred to as HPT-JT syndrome). As a control we also profiled normal parathyroid tissue.
Materials and methods
Tumor samples
Fresh tumor tissues were obtained from the patient with parathyroid tumor in HPT-JT syndrome and one with a sporadic parathyroid tumor (15). As a control, normal parathyroid gland was obtained from excess tissues after routine parathyroid auto-transplantation during thyroidectomy. Sporadic parathyroid adenoma and the parathyroid tumors in HPT-JT syndrome were snap-frozen in liquid nitrogen immediately after surgery and stored at −80°C until use. The parathyroid tumor in HPT-JT syndrome was classified as a carcinoma (15), and confirmed to harbour a germ-line HRPT2 splicing mutation (15,16). The histology of the parathyroid carcinoma was classified according to the WHO guidelines (4). Patient data are summarized in Table I. Approval for this study was obtained from the Human Research Ethics Committees of the participating institutions.
Preparation of RNA
Total RNA was extracted from frozen tissues using TRIzol reagent (Invitrogen Life Technologies, Carlsbad, CA) and purified using Qiagen RNeasy spin columns (Qiagen, Inc., Valencia, CA) according to the protocols recommended by Illumina (San Diego, CA) for DASL applications. After DNase digestion and clean-up procedures, RNA samples were quantified, aliquoted and stored at −80°C until use. For quality control, RNA purity and integrity were evaluated by denaturing gel electrophoresis, OD 260/280 ratio and analysed on an Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
DASL (cDNA mediated annealing, selection, extension and ligation) assay
A 0.25–1.0 μg samples of total RNA were converted into cDNA using biotinylated random primers, oligodeoxythymidine primers and Illumina reagents. The resulting biotinylated cDNA was annealed to assay oligonucleotides and bound to streptavidin-conjugated paramagnetic particles to be able to select cDNA/oligo complexes. After oligo hybridization, mis-hybridized and non-hybridized oligos were washed away, and bound oligos were extended and ligated to generate templates for amplification with shared PCR primers. The fluorescence-labelled complementary strand was hybridized at 45°C for 18 h to Illumina HumanRef-8 DASL Expression BeadChips. After hybridization, the arrays were scanned by laser confocal microscopy using an Illumina BeadArray Reader. Array data export, processing and analysis were performed with Illumina BeadStudio v3.1.3 (Gene Expression Module V3.3.8).
Raw data preparation and statistic analysis
The exported raw array data were filtered by detection P-value <0.05 (similar to noise signals) in at least 50% of samples. We applied a filtering criterion for data analysis in which a higher signal value was required to obtain a detection P-value <0.05. The selected gene signal value was transformed by logarithm and normalized by a quantile method. Comparisons were carried out using t-tests and Benjamini-Hochberg FDR (false discovery rate) adjusted P-values (<0.05) and fold changes. Subsequently Illumina HumanRef-8 DASL Expression BeadChip expression data were re-analyzed using GenPlex software 3.0 (Istech, Inc., Korea). For primary data filtering, spots with a P-call (detection call P-value <0.1) were selected, and the remaining filtered data were used for further analysis. Quantile normalization was used to normalize data.
Unsupervised and supervised analysis
Unsupervised hierarchical clustering of log ratios was performed with Cluster 3.0, and the results were visualized with Treeview software (Stanford University, Palo Alto, CA). Pearson’s correlation, mean centering and average linkage were applied in all clustering applications. For clustering, we used average linkage clustering with standard correlation as the similarity metric. Genes within 0.5 standard deviations of the log-transformed ratios were discarded. To select specific and robust gene sets associated with the normal parathyroid gland, sporadic parathyroid adenoma and HPT-JT syndrome, we used the combination analysis with Welch’s t-test and fold-change. On Welch’s t-test and fold-change analysis, genes having P-values <0.05 and showing fold-change >2.0 were selected.
KEGG pathway analysis
Molecular pathways associated with differentially expressed genes were identified using the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway database (http://www.genome.jp/kegg). This tool maps genes to known pathways and provides a summary of the biological processes affected. The above tool directs the specific genes to predicted pathways and provides the summary of how the biological processes have been affected. Then, the results of the biological processes were shown by a bar graph, giving the P-value <0.05 that was considered significant in KEGG.
Real-time PCR and RT-PCR
First strand cDNA was synthesized using 1 μg of total RNA, oligo(dT) and SuperScript® II Reverse Transcriptase (Invitrogen, Grand Island, NY). RT-PCR was carried out using an iCycler (Bio-Rad, Hercules, CA). The RT-PCR conditions were 95°C for 2 min, followed by 30 cycles at 95°C for 30 sec, 60°C for 30 sec, 72°C for 30 sec and 72°C for 10 min for final extension. Real-time RT-PCR for relevant genes was carried out using a SYBR-Green PCR kit (Bio-Rad) with an Mx3000P™ Real-Time PCR System (Stratagene, La Jolla, CA). The PCR primer sequences used are shown in Table II. The PCR conditions were 95°C for 10 min, followed by 45 cycles of 95°C for 15 sec, 60°C for 1 min and 72°C for 30 sec with a single fluorescence measurement. For dissociation curves, reactions were incubated at 95°C for 1 min, and lamped up from 55 to 95°C at a heating rate of 0.1°C/sec, and fluorescence was measured continuously. Gene expression was calculated according to the 2−ΔΔCt method using β-actin as an internal standard (17).
Immunohistochemistry (IHC)
Tissues were processed for paraffin embedding, and 3-μm sections were prepared and mounted on glass slides. The mounted sections were pretreated with 10 mM sodium citric acid at 95°C for 10 min for antigen retrieval, and then with 0.3% H2O2 in methanol for 30 min to permeabilize them. The sections were blocked using 2.5% horse serum, and then incubated with rabbit anti-FGFR1 antibody (Cell Signaling, Danvers, MA). After rinsing, they were incubated sequentially in biotinylated anti-rabbit antibody and then with ABC complex (Vector, Burlingame, CA) for 1 h at room temperature. Immunoreactivity was visualized by incubation in 3′,3-diaminobenzidine (DAB) solution (Vector) for 50 sec at room temperature. The sections were counterstained with Harris haematoxylin, dehydrated, cleared, mounted and viewed under a light microscope (AX70; Olympus, Tokyo, Japan). For immunofluorescence assays, the mounted sections were blocked with 2.5% horse serum, and incubated with rabbit anti-FGFR1 antibody (Cell Signaling). After rinsing, they were incubated with anti-rabbit antibody. Nuclei were stained with 4′,6-diamino-2-phenylindole (DAPI) (ImmunoBioscience, Santa Clara, CA) and viewed under a fluorescence microscopy (Axiovert 200, Carl Zeiss, Oberkochen, Germany).
Results
Transcriptome scans identified large-scale gene expression changes between HPT-JT syndrome, sporadic parathyroid adenoma and normal parathyroid gland
Initially we performed a molecular classification analysis to determine whether our spotted-oligonucleotide microarray system was able to differentiate HPT-JT syndrome, sporadic parathyroid adenoma, and normal parathyroid gland by molecular profiling. We conducted an average linkage unsupervised hierarchical clustering analysis. In Fig. 1A red and green indicate transcript expression levels above and below the median of the sample. We selected 5697 genes (>+2-fold, 3375 and <−2-fold, 2322 genes, P<0.05) in HPT-JT syndrome and 5328 genes (>+2-fold, 3345 and <−2-fold, 1983 genes, P<0.05) in sporadic parathyroid adenoma relative to normal parathyroid gland according to the minimal filtering criteria (Fig. 1B). Venn diagram analysis of gene signatures common to HPT-JT syndrome and sporadic parathyroid adenoma revealed that 2065 of the genes were de-regulated relative to the normal parathyroid gland only in HPT-JT syndrome, and 1696 genes only in sporadic parathyroid adenoma (Fig. 1C). These data suggest that thousands of genes either contributed to or were affected by the development of tumor in parathyroid gland.
Identification of molecular signature in HPT-JT syndrome and sporadic parathyroid adenoma
By applying the combination of Welch’s t-test and fold-change analysis to the microarray data, we identified an upregulated specific molecular signature of 1101 genes in HPT-JT syndrome, and a downregulated specific molecular signature of 964 genes. Similarly we obtained an upregulated specific molecular signature of 1071 genes in sporadic parathyroid adenoma and a downregulated specific molecular signature of 625 genes. A total of 2274 genes were upregulated in both HPT-JT syndrome and sporadic parathyroid adenoma, and 1358 genes were downregulated in both (Fig. 1C).
Identification of the molecular pathways in HPT-JT syndrome and sporadic parathyroid adenoma
Using the pathway mining tool in the KEGG pathway database we characterized the biological processes in which the 2065 genes in the HPT-JT syndrome signature and the 1696 genes in the sporadic parathyroid adenoma signature participated (Fig. 2). MAPK, regulation of actin, and calcium signaling pathways were the most significant signaling pathways associated specifically with HPT-JT syndrome (Fig. 2A), while calcium signaling, MAPK and, insulin signaling were the most significant signaling pathways associated with sporadic parathyroid adenoma (Fig. 2B). We sub-classified, according to KEGG, 16 of the genes associated with pathways that were specifically de-regulated in HPT-JT syndrome (Fig. 2C), and 15 of the genes in sporadic parathyroid adenoma (Fig. 2D). In Fig. 2C and D solid and open bars represent genes up- or downregulated, respectively. Genes overexpressed only in HPT-JT syndrome were FGFR1, FGF19, FGFR2, RELA, CHUK, MKNK2 and NFATC4, and genes underexpressed only in HPT-JT syndrome were FGF22, CACNA1A, FGF3, TCF7, NTRK1, EGFR, CACNA1G, ATF4 and FGF12. The PLCB4, CAMK2D, FGF1, TNF, IL1B, FGF7, PHKB, PRKAR2A and IRAK1 were overexpressed only in sporadic parathyroid adenoma, while CACNA1H, FGFR4, FGF17, MAPK10, TRAF2 and CAMK2B were underexpressed. It is evident that the genes de-regulated in HPT-JT syndrome are quite different from those de-regulated in sporadic parathyroid adenoma (Tables III and IV).
Experimental validation of the molecular signature in HPT-JT syndrome and sporadic parathyroid adenoma using comparative real-time PCR and RT-PCR
In order to validate the gene expression data obtained by the DASL-assay, we selected the genes highly de-regulated in both HPT-JT syndrome and sporadic parathyroid adenoma shown in Fig. 2C and D, and performed comparative real-time reverse transcriptase-PCR analysis and RT-PCR. Levels of transcription of 10 selected genes up- and downregulated in HPT-JT syndrome are shown in Fig. 3A and B, respectively, and those of 10 genes up- and downregulated in sporadic parathyroid adenoma in Fig. 3C and D. Comparative real-time RT-PCR data showed that FGFR1, FGFR2, FGF19, RELA and CHUK were upregulated in HPT-JT syndrome relative to sporadic parathyroid adenoma, in good agreement with the microarray data (Fig. 2C). Similarly NTRK1 and FGF22 were downregulated in agreement with the microarray data, but the findings for TCF7, FGF3, CACNA1A were ambiguous, and their levels of expression were low (Figs. 3B and 4A). In sporadic parathyroid adenoma, the genes for PLCB4, FGF1, IL1B, FGF7, MAPK10, FGFR4 did not differ significantly between the two samples, whereas for CAMK2D, TRAF2, FGF17, CACNA1H the data of real-time PCR and RT-PCR conflicted with the microarray findings (Figs. 3C and D, 4A). The most highly expressed gene in HPT-JT syndrome, FGFR1, was further validated by immunohistochemistry. Immunohistochemical staining with FGFR1 antibody revealed strong expression in HPT-JT syndrome, but no detectable expression in sporadic parathyroid adenoma or normal parathyroid gland (Fig. 4B). The finding that FGFR1 protein expression was significantly upregulated in HPT-JT syndrome suggests that FGFR1 does indeed play a role in parathyroid carcinogenesis.
Discussion
Parathyroid carcinoma is a rare malignant tumor responsible for less than 1% of cases of hyperparathyroidism. An increased incidence of this carcinoma has been reported in patients with HPT-JT syndrome (2). The incidence of parathyroid carcinoma in HPT-JT syndrome is reported to be as high as 15% (18,19). Germline mutations of the HRPT2 gene have been described in parathyroid carcinoma and in HPT-JT parathyroid carcinoma syndrome (11–14), but the function of the HRPT2 gene is unknown. Previously, we were able to amplify the mutated allele generated by a splice acceptor site mutation of HRPT2 in HPT-JT syndrome (15), and we quantified the aberrantly spliced HRPT2 mRNA resulting from the splicing abnormality by real-time RT-PCR (16). Loss of HRPT2 expression was found to alter the expression of several target genes that are associated with cell growth and cell death (20).
In this study, to clarify the molecular mechanisms involved in the development of parathyroid carcinomas in HPT-JT syndrome harbouring a splicing HRPT2 mutation, we undertook gene expression profiling using Illumina DASL matrices. We identified sixteen genes in the HPT-JT syndrome involved in regulation of MAPK signaling, regulation of actin cytoskeleton, prostate cancer and apoptosis pathways, and 15 genes in sporadic parathyroid adenoma involved in calcium signaling, MAPK signaling, insulin signaling, apoptosis and Wnt signaling (Fig. 2, Table III). Our data suggest that increased expression of fibroblast growth factor receptor type 1 (FGFR1) is highly relevant to parathyroid carcinogenesis in HPT-JT syndrome harbouring an HRPT2 splicing mutation. FGF signaling mediated by FGFR involves a classic receptor tyrosine kinase signaling pathway and its de-regulation at various points can result in malignancy (21). FGF signaling is involved in multiple developmental processes including embryonic mesodermal patterning (22). In the adult, it contributes to tissue homeostasis, as well as tissue repair, angiogenesis and inflammation (23,24). Elevated levels of FGFR1 have been found in a number of cancers, including prostate, breast and sarcoma (25–28). One study detected frequent focal amplification of FGFR1 in non-small cell lung carcinoma cell lines, and these cell lines were dependent on FGFR1 activity for growth (29,30). FGFR1 is frequently upregulated in prostate cancer (29,31). Klotho, which is expressed in the kidney, pituitary and parathyroid glands, converts FGFR1 (a canonical receptor for various FGFs) into a specific receptor for FGF-23 (32,33). The parathyroid cells expressing Klotho and FGFR1 are responsive to FGF-23, both in vivo and in vitro (33,34). However, studies on FGFR-Klotho signaling in parathyroid glands show conflicting results (33). One current hypothesis suggests that FGFR1 upregulation destroys the subtle interplay between epithelial and mesenchymal cells (30), and FGFR1 has also been suggested to have tumor suppressor properties, since downregulated expression of FGFR2 in particular has been found in many cancers (21,35–37). However, it is not clear whether FGFR2 is a tumor suppressor, since it is also found to be upregulated in gastric, pancreatic and lung cancers (21). Further studies are necessary to clarify the role of FGFR1 in parathyroid glands. Our results may provide insight into the pathogenesis of parathyroid neoplasia in the HPT-JT syndrome.
In summary, our gene expression profiling experiments suggest that upregulation of FGFR1 expression is associated with parathyroid carcinogenesis in HPT-JT syndrome due to an HRPT2 splicing mutation. Hence FGF signaling molecules may provide useful targets for treatment.
Acknowledgements
This study was supported by Basic Science Research Program through the National Research Foundation of Korea (NRF) funded by the Ministry of Education, Science and Technology (2011-0008886).
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