Integrin β4 and vinculin contained in exosomes are potential markers for progression of prostate cancer associated with taxane-resistance
- Authors:
- Published online on: May 18, 2015 https://doi.org/10.3892/ijo.2015.3011
- Pages: 384-390
Abstract
Introduction
Prostate cancer is one of the most common male cancers and is the second-leading cause of cancer death among men in the United States (1). Most patients with prostate cancer well respond to androgen deprivation therapy, but 10–20% of those develop castration-resistant prostate cancer (CRPC) (2). Taxanes, a class of microtubule-targeting anticancer agents such as paclitaxel and docetaxel, have been administered to CRPC patients and docetaxel is currently used as the first-line chemotherapy (3). Docetaxel therapy demonstrated an overall survival benefit for CRPC patients, but there is a finite amount of time before acquiring resistance (3,4).
Development of resistance to anticancer drugs is associated with more malignant and aggressive phenotype and acceleration of tumor growth in various types of cancer including prostate cancer (5–7). Although prostate-specific antigen (PSA) has been commonly used as a marker for tumor growth, there are no clinically useful markers for diagnosing progression and aggressiveness as well as taxane-resistance of prostate cancer. Given that such markers were available, one could select CRPC patients sensitive to docetaxel, avoid administration to drug-resistant patients and also monitor the drug efficacy, minimizing the incidence of adverse effects as well. Furthermore, prediction of progression and prognosis of CRPC patients might be possible.
Exosomes are microvesicles with a diameter of 40–150 nm that are secreted from cells (8). Exosomes contain a variety of biomolecules such as protein, miRNA, RNA and DNA (9). Molecular signature of exosomes in large part reflects that of the cells from which they are derived. Exosomes are present in the body fluids such as blood and urine and therefore expected to serve as a diagnostic marker for various diseases including cancer (10). It has been recently reported that circulating extracellular vesicles (EV) or exosomes in blood can be used for detection of colorectal cancer using the antigen CD147 embedded in cancer-linked EVs, by which the authors paved the way for exosome-based diagnosis (11). It would be of great benefit if progression and aggressiveness as well as drug-resistance of cancer could be diagnosed by examining exosomes in the body fluids. This can be especially useful for prostate cancer patients, because serial biopsy of prostate is not usually performed because of the invasiveness and inaccuracy.
In the present study, we aimed to identify proteins contained in exosomes that could be markers for progression and taxane-resistance of prostate cancer. Specifically, we isolated exosomes by differential centrifugation from taxane-sensitive PC-3 cells and taxane-resistant PC-3R cells that were generated from PC-3 cells and subjected them to quantitative proteomic analysis. We identified integrin β4 (ITGB4) and vinculin (VCL) as potential markers for progression and taxane-resistance and also confirmed their presence in exosomes captured by anti-CD9 antibody from the culture medium of PC-3R cells. Lastly, we revealed the roles of ITGB4 and VCL in cell migration and invasion of PC-3R cells. Together, we identified ITGB4 and VCL in exosomes as markers for progression and aggressiveness of prostate cancer and possibly for prediction of taxane-resistance.
Materials and methods
Reagents and antibodies
Paclitaxel was purchased from Sigma-Aldrich (St. Louis, MO, USA). Anti-CD9, anti-Alix and anti-vinculin antibodies were obtained from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Anti-β-actin, anti-integrin β4 and anti-GAPDH antibodies were from Cell Signaling Technology (Danvers, MA, USA). Anti-TSG101 antibody was obtained from Abcam (Cambridge, UK).
Cell culture
Human prostate cancer PC-3 cells were purchased from the American Type Cell Collection (ATCC; Manassas, VA, USA) and cultured in RPMI-1640 medium supplemented with 10% fetal bovine serum (FBS) in a humidified atmosphere containing 5% CO2. Taxane-resistant PC-3 cells (PC-3R) that were resistant to both paclitaxel and docetaxel were generated from parental PC-3 cells as previously described (12). In the present study, we used PC-3R cells viable in the presence of 20 nM paclitaxel.
Isolation of exosomes from the cell culture medium by differential centrifugation
The conditioned medium was harvested from cells cultured in advanced RPMI-1640 medium (Life Technologies, Carlsbad, CA, USA). Exosomes were isolated from the medium according to the previously described method with minor modifications (13). Briefly, 1×106 cells were seeded on 150-mm dish and the conditioned medium was collected 72 h later. The medium was centrifuged at 2,000 × g for 10 min to get rid of cells and the supernatant was centrifuged at 12,000 × g for 30 min to remove debris. Lastly, exosomes were pelleted by ultracentrifugation at 110,000 × g for 70 min, resuspended in PBS and stored at −80°C until use.
Isolation of exosomes by using anti-CD9 antibody-conjugated magnetic beads
Dynabeads M-270 Epoxy magnetic beads (Life Technologies) were conjugated with mouse monoclonal anti-CD9 antibody (BioLegend, San Diego, CA, USA) according to the manufacturer’s protocol. The cell culture medium was centrifuged at 2,000 × g for 10 min and the supernatant was centrifuged at 12,000 × g for 30 min. After filtration through 0.20 μm polyvinylidene difluoride (PVDF) filter, 30 ml of the filtrate were incubated with 1 mg of the anti-CD9 antibody-conjugated beads for 90 min with rotation at 4°C. Beads were then washed 3 times with ice-cold PBS, resuspended in RIPA buffer containing protease inhibitor cocktail and stored at −20°C until use.
Western blot analysis
Whole cell lysates were prepared by resuspending cells in ice-cold lysis buffer [1% Igepal CA-630, 1% sodium deoxycholate, 0.1% SDS, 150 mM NaCl, 25 mM Tris-HCl (pH 7.6)] containing protease inhibitor cocktail. Cell lysates and exosomes were subjected to electrophoresis on 7.5% SDS-polyacrylamide gels and transferred to PVDF membranes (GE Healthcare, Little Chalfont, UK). After blocking in 5% skim milk, membranes were probed with a primary antibody and subsequently with a horseradish peroxidase-linked secondary antibody. After washing, bound proteins were visualized using the ECL Prime Western blotting detection system (GE Healthcare).
Transmission electron microscopic analysis
After fixation with 2.5% glutaraldehyde and post-fixation with 2% osmium tetroxide, exosomes were embedded in polymeric resin Quetol 812 (Nisshin EM, Tokyo, Japan) and sectioned by ultramicrotomy into 80-nm thick slices, which were deposited onto Cu grids. Exosomes were then stained with uranyl acetate and lead citrate and examined with the transmission electron microscope (Hitachi H-7500; Hitachi, Tokyo, Japan).
Particle size analysis
Size distribution analysis of exosomes was performed with the qNano system (Izon Science, Christchurch, New Zealand). After dilution in PBS, the size of exosomes was measured using the NP100 nanopores (particle size analysis range; 70–200 nm) and CPC100 calibration particles and analyzed by the Izon Control Suite 2.2 software according to the manufacturer’s instructions.
iTRAQ-based labeling
Exosomes were labeled with iTRAQ reagents using the iTRAQ multiplex kit (AB Sciex, Redwood City, CA, USA) according to the manufacturer’s protocol. In brief, exosomes were isolated from two independent cell cultures for PC-3 and PC-3R cells. Exosomes (5 μg) diluted in PBS was denatured by SDS, reduced by Tris (2-carboxyethyl) phosphine (TCEP) at 60°C for 1 h and alkylated by cysteine blocking reagent methyl methanethiosulfonate (MMTS) at room temperature for 10 min. Samples were then trypsinized at 37°C for 5 h and labeled at room temperature for 1 h with iTRAQ reagent 114, 115, 116 or 117. Samples from PC-3 cells were labeled with 114 or 115 and those from PC-3R cells were labeled with 116 or 117. Labeled samples were cleaned up by using an ICAT cation exchange column (AB Sciex) and desalted using a MonoSpin C18 column (GL Sciences, Tokyo, Japan). After evaporation and reconstitution in 0.1% trifluoroacetic acid (TFA), samples were subjected to LC-MALDI-TOF/TOF analysis.
LC-MALDI-TOF/TOF analysis
Peptides were separated and automatically spotted onto a MALDI plate using direct nanoLC and MALDI fraction system DiNa-MaP (KYA Technologies, Tokyo Japan). Solvent A was 2% MeCN/0.1% TFA and solvent B was 70% MeCN/0.1% TFA. The matrix solution was prepared at a concentration of 4 mg/ml α-cyano-4-hydroxycinnamic acid (CHCA) and 0.08 mg/ml ammonium citrate in 70% MeCN/0.1% TFA. After sample was loaded onto a trap column (HiQ sil C18W-3, 0.5×1 mm; KYA Technologies), valve was switched and peptides were separated by an analytical column (HiQ sil C18W-3, 0.1×50 mm; KYA Technologies) at a flow rate of 300 nl/min. The LC gradient was as follows: 0–2 min, 0–5% solvent B; 2–60 min, 5–45% solvent B; 60–75 min, 45–100% solvent B; 75–85 min, 100% solvent B; 85–100 min, 0% solvent B. The matrix solution was pumped at a flow rate of 1400 nl/min. The column end was connected directly to the spotter needle. LC eluent was mixed with matrix solution and spotted onto a MALDI plate at 30-sec intervals between 5–90 min for a total of 171 spots. Mass spectra were acquired using the AB Sciex TOF/TOF 5800 system operated on TOF/TOF Series Explorer software version 4.1 (AB Sciex). For each spot, MS spectra were acquired in positive ion mode between m/z 800 and 4000 and accumulated from 800 laser shots in a randomized raster. MS/MS spectra were acquired using parameters and methods as follows: collision energy, 1 kV; CID control, OFF; laser shots, 4000; minimum S/N filter, 50; mininum mass, 800 Da; maximum mass, 4000 Da; acquisition order/fraction, strongest precursors first; maximum precursors/fraction, 100; precursor mass window, 200 resolution (FWHM); metastable suppression, ON.
Protein identification
All MS/MS data were submitted to ProteinPilot software version 4.5 (AB Sciex). Search parameters were as follows: sample type, iTRAQ 4plex (peptide labeled); Cys. alkylation, MMTS; digestion, trypsin; instrument, 5800; species, Homo sapiens; ID focus, biological modifications; database, uniprot_sprot_can+iso_20100622+Contams+.fasta (AB Sciex). Protein identification was considered to be correct based on the following selection criteria: protein having at least 2 peptides with an ion score >95% confidence; and protein with protein score (ProtScore) >1.3 (unused, P<0.05, 95% confidence). The average fold-change (PC-3R/PC-3) was calculated as an average of 4 pairwise comparisons (116/114, 116/115, 117/114 and 117/115).
Small interfering RNA transfection
Two small interfering RNAs (siRNAs) for human ITGB4 and VCL as well as siGENOME non-targeting siRNA control gene were purchased from Thermo Fisher Scientific (Waltham, MA, USA). siRNAs were transfected into cells at 2 nM using Lipofectamine 2000 transfection reagent (Thermo Fisher Scientific) as previously described (14).
Cell growth assay
The number of viable cells in 12-well plate was determined by trypan blue dye exclusion assay.
Cell viability assay
To determine the cell viability after paclitaxel treatment, WST assay was performed in 96-well plate using a kit obtained from Roche (Basel, Switzerland).
Cell migration assay
Transfected cells were cultured in 6-well plate until confluent. Cell layers were wounded by using a 1-ml tip and cultured for 24 h. The wound area was determined by analyzing the images taken at 0 and 24 h using Photoshop software (Adobe Systems, San Jose, CA, USA). The migration area was determined by subtracting the area free of cells at 24 h from that at 0 h and expressed as a percentage of that at 0 h.
Cell invasion assay
Twenty-four hours after seeding 1×105 transfected cells onto the Matrigel invasion chamber (Corning Incorp., Corning, NY, USA), cells were fixed with 100% methanol and stained with crystal violet and the number of invaded cells were counted. The invasion rate was expressed as a percentage of the number of invaded cells in siRNA-transfected cells to that in control siRNA-transfected cells.
Statistical analysis
Statistical differences were determined by the Student’s t-test. P<0.05 was considered statistically significant.
Results
Isolation of exosomes from taxane-sensitive PC-3 and -resistant PC-3R cells
We isolated exosomes from the cell culture medium by differential centrifugation. In both PC-3 and PC-3R cells, exosomal marker proteins such as CD9, Alix and TSG101 were enriched in exosomes compared to cell lysates and there was no difference in the abundance of the marker proteins between two cell lines (Fig. 1A). The transmission electron microscopic analysis revealed morphology that is typical of exosomes in both PC-3 and PC-3R cells and showed no differences in size and shape of exosomes isolated from both cell lines (Fig. 1B). Consistent with these findings, the particle size distribution of exosomes isolated from PC-3 cells was similar to that from PC-3R cells as measured by the qNano particle size analyzer (Fig. 1C). These results indicate that exosomes were successfully isolated by differential centrifugation.
Identification of proteins upregulated in exosomes isolated from PC-3R cells
It has been previously reported that expression of a variety of genes is altered in taxane-resistant cancer cells including prostate cancer cells, which are involved in taxane-resistance, progression and aggressiveness of cancer (15–17). In order to identify differentially expressed proteins in exosomes between taxane-sensitive PC-3 and -resistant PC-3R cells, we conducted iTRAQ-based quantitative proteomic analysis of exosomes isolated by differential centrifugation. Exosomes were isolated from two independent cell cultures for PC-3 and PC-3R cells. Samples from PC-3 cells were labeled with 114 or 115 reporter and those from PC-3R cells were labeled with 116 or 117 reporter. We detected a total of 110 proteins (data not shown). The fold-changes were 1.00±0.07 (mean ± SD) for PC-3 cells (115/114) and 1.01±0.11 for PC-3R cells (117/116). The average fold-change (PC-3R/PC-3) was calculated as an average of 4 pairwise comparisons (116/114, 116/115, 117/114 and 117/115). As a result, we identified 4 and 4 proteins upregulated and downregulated in exosomes from PC3-R cells compared with those from PC-3 cells (>1.5-fold and <0.67-fold), respectively (Tables I and II). Among upregulated proteins, we selected ITGB4 and VCL for further studies, because integrin and VCL are involved in focal adhesion signaling pathways and have been implicated in cancer progression (18,19).
Upregulation of ITGB4 and VCL in exosomes isolated from PC-3R cells by differential centrifugation
In order to confirm expression changes, cell lysates as well as exosomes were subjected to western blot analysis. As shown in Fig. 2A, expression of both ITGB4 and VCL was higher in exosomes isolated from PC-3R cells than in those from PC-3 cells. Similarly, ITGB4 and VCL expression was increased in cell lysates of PC-3R cells compared to PC-3 cells. The expression changes were more pronounced in cell lysates than in exosomes. These results suggest that expression of ITGB4 and VCL in exosomes reflected that within cells and that both were elevated in exosomes isolated from PC-3R cells by differential centrifugation.
Upregulation of ITGB4 and VCL in exosomes isolated from PC-3R cells by using anti-CD9 antibody-conjugated magnetic beads
In the present study, we isolated exosomes from the cell culture media by using anti-CD9 antibody-conjugated magnetic beads and performed western blot analysis. The results showed that the levels of ITGB4 and VCL in exosomes captured by anti-CD9 antibody from PC-3R cells were higher than those from PC-3 cells, while the level of CD9 in exosomes were similar between two cell lines. It is noteworthy that the difference in the ITGB4 and VCL levels between PC-3 and PC-3R cells was more evident in exosomes isolated by the immunoaffinity method than in those isolated by differential centrifugation. These results suggest that the levels of ITGB4 and VCL in CD9-positive exosomes from PC-3R cells were elevated compared to those from PC-3 cells.
ITGB4 and VCL knockdown does not affect proliferation and taxane-sensitivity of PC-3R cells
Although previous studies demonstrated that ITGB4 and VCL play critical roles in various types of cancer including prostate cancer (19–26), their roles in taxane-resistant prostate cancer have not been clarified. We therefore knocked down ITGB4 and VCL expression by siRNA transfection and examined the effect of silencing on proliferation and taxane-resistance. As shown in Fig. 3A, ITGB4 and VCL expression was effectively silenced by siRNAs. There was no difference in proliferation among control siRNA-, ITGB4 siRNA- and VCL siRNA-transfected cells (Fig. 3B). The taxane-resistance was also not affected by ITGB4 and VCL knockdown (Fig. 3C). These result suggest that ITGB4 and VCL that are upregulated in PC-3R cells may not be involved in proliferation and taxane-resistance.
ITGB4 and VCL knockdown reduces migration and/or invasion of PC-3R cells
We next examined if silencing of ITGB4 and VCL expression could influence on migration and invasion of PC-3R cells. As shown in Fig. 4A, the migration activity was decreased in ITGB4 siRNA-transfected cells but not in VCL siRNA-transfected cells compared with control siRNA-transfected cells. In contrast, both ITGB4 and VCL knockdown diminished invasion of PC-3R cells (Fig. 4B). These results suggest that ITGB4 and VCL play an important role in migration and/or invasion of PC-3R cells.
Discussion
Drug-resistance is associated with malignant and aggressive phenotype and acceleration of tumor growth in various types of cancer (5,6). In the present study, based on the quantitative proteomic analysis, we found increased levels of ITGB4 and VCL in exosomes isolated from PC-3R cells compared with PC-3 cells. We also confirmed increased expression of both ITGB4 and VCL within PC-3R cells and performed knockdown experiments. The results showed that ITGB4 and VCL play a significant role in migration and/or invasion, but not in proliferation and taxane-resistance. Collectively, we identified ITGB4 and VCL contained in exosomes as potential diagnostic markers for progression and aggressiveness of prostate cancer associated with taxane-resistance.
Integrins are a family of cell surface transmembrane adhesion receptors that connect the actin cytoskeleton to the extracellular matrix (ECM) at focal adhesion and also mediate cell to cell interactions (27). There are 18 α and 8 β subunits that form 24 integrin heterodimers. The integrin complexes bind to ECM molecules such as fibronectin, collagen and laminin. The β4 subunit associates with the α6 subunit forming α6β4 heterodimer, which mediates integrin signaling activated by laminin. VCL is a cytoskeletal protein that links integrin molecules to the actin cytoskeleton (28). More specifically, VCL binds to F-actin and talin that in turn binds to β-integrin, by which VCL is involved in cell to cell and cell to ECM interactions. It is intriguing that ITGB4 and VCL that functionally interact and participate in cell adhesion, contractility, motility and growth were identified as exosomal markers for progression and aggressiveness of prostate cancer.
Aberrant expression of integrin subunits has been implicated in the malignant phenotype of a variety of cancer (18). With regard to ITGB4, Banyard et al (29) reported that ITGB4 as well as EPCAM (epithelial cell adhesion molecule) and PLAU [urokinase-type plasminogen activator (uPA)] were elevated in metastatic human prostate cancer DU145-LN4 cells with increased tumorigenesis and increased ability to colonize lymph nodes. The authors also showed that siRNA knockdown of ITGB4 reduced cell migration, but did not inhibit cell invasion into Matrigel. Kumano et al (22) reported that the expression levels of ITGB4 in PC-3 cells were markedly higher compared with those in human prostate cancer LNCaP or DU145 cells and that treatment with AexU may be a useful therapeutic option for prostate cancer when ITGB4 is overexpressed. Yoshioka et al (23) demonstrated that all high-grade prostatic intraepithelial neoplasia (PIN) lesions expressed elevated levels of ITGB4, that ITGB4 was expressed not only in residual basal cells but also in neoplastic cells and that the tumor cells within a large fraction of metastatic lesions exhibited high levels of ITGB4 at the cell surface, suggesting that ITGB4 may play a role in prostate tumor initiation or progression. Increased expression of ITGB4 in pancreatic adenocarcinomas was previously reported by Cruz-Monserrate et al (20). The authors showed that integrin α6β4 is expressed only on the basal surface of ductal cells in normal pancreas but is dramatically overexpressed during pancreatic adenocarcinoma progression and that it displays altered localization at the earliest stages of pancreatic intraepithelial neoplasia (PanIN), thus representing an early event in pancreatic adenocarcinoma progression. These observations support the idea that ITGB4 in exosomes could be a useful marker for progression and also possibly for early detection of cancer.
VCL that links integrin to the actin cytoskeleton was also identified as another exosomal marker for prostate cancer progression in the present study. Dysregulation of VCL expression may result in altered cell adhesion, contractility, motility and growth, all of which are important processes in cancer metastasis (26). In prostate cancer, Ruiz et al (19) found a strong association between VCL gene amplification and overexpression in PC-3 cells. The authors performed immunohistochemical analysis of 443 specimens from across all stages of prostate cancer progression and demonstrated that VCL expression was highest in CRPC, but negative or very low in benign prostatic hyperplasia, suggesting that VCL over-expression might contribute to prostate cancer progression by enhancing tumor cell proliferation. Geisler et al (21) recently reported that VCL expression was significantly upregulated in prostate cancer based on the analysis of prostate tissue samples by 2D-DIGE (two-dimensional difference in gel electrophoresis) and mass spectrometry (MS). Intriguingly, the authors showed that urinary VCL levels in prostate cancer patients were significantly higher than in urine from non-tumor patients. It is tempting to speculate that VCL detected in urine may correspond to VCL contained in exosomes secreted from prostate normal and cancer cells. We also showed that the ITGB4 and VCL levels in exosomes captured by anti-CD9 antibody-conjugated magnetic beads from PC-3R cells were higher than those from PC-3 cells. The results suggest that ITGB4 or VCL on CD9-positive exosomes could be a marker for progression and invasiveness of prostate cancer. Combined use of anti-ITGB4 or -VCL antibody with anti-CD9 antibody may allow development of exosome-based diagnostic systems. However, it is possible that cells other than cancer cells may secrete CD9-positive exosomes containing ITGB4 or VCL. In order to develop a reliable diagnostic test with good specificity and sensitivity, it is therefore of great importance to detect ITGB4 or VCL in exosomes secreted from the specific cell types of interest. In this regard, we have recently reported that exosomes derived from prostate can be captured from blood by using anti-PSMA (prostate-specific membrane antigen) antibody bound to magnetic beads (30). The detection of ITGB4 or VCL in PSMA-positive exosomes in blood would enable us to develop an accurate diagnostic test for progression and aggressiveness and possibly for early diagnosis and taxane-resistance of prostate cancer. This would also apply to other cancers with increased expression of ITGB4 or VCL, if a reliable surface marker specific to cells such as pancreatic epithelial cells from which exosomes were derived, could be identified.
In conclusion, we have demonstrated that ITGB4 and VCL in exosomes could be potential markers for progression and aggressiveness of prostate cancer associated with taxane-resistance. In order to determine the usefulness of ITGB4 and VCL as exosomal markers for the malignant phenotype of cancer in the clinical setting, development of diagnostic systems and their validation in large-scale clinical studies will be required.
Acknowledgements
The present study was supported in part by a Grant-in-Aid from the Ministry of Education, Culture, Sports, Science, and Technology of Japan. The authors are grateful to Mr. Yasuo Hasegawa for his technical support for electron microscopy.
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