p-STAT3 in luminal breast cancer: Integrated RNA-protein pooled analysis and results from the BIG 2-98 phase III trial
- Authors:
- Published online on: November 27, 2017 https://doi.org/10.3892/ijo.2017.4212
- Pages: 424-432
Abstract
Introduction
Signal transducers and activators of transcription (STATs), when phosphorylated at tyrosine elements form functional dimmers with each other, translocate to the nucleus to regulate the expression of genes by binding to specific elements within gene promoters (1,2). The function of the interleukin-6 (IL-6)-STAT3 pathway in signalling and its control of the expression of different genes prompted the investigation of the pathway in cancer. Indeed, the IL-6-STAT3 pathway has been found to be critical for tumour development through different mechanisms that include direct effects on cell survival, migration and proliferation, as well as non-direct effects on the microenvironment surrounding the tumour (3–7). Although preclinical data suggest that the IL-6-STAT3 pathway is an important target for cancer therapy, to date, the practical clinical utility and efficacy is limited (8,9). This reflects the challenges in translating preclinical evidence into relevant clinical practice and demonstrates the complexity of cancer biology.
STAT3 plays a role in the development of breast cancer, as shown by several studies (3,4,10–13). However, some studies evaluating the prognostic role of phosphorylated STAT3 (p-STAT3), have yielded conflicting results (14–18). The aim of this study was to evaluate the prognostic role of p-STAT3 in luminal breast cancer patients in the adjuvant setting and in the context of a prospective trial.
Materials and methods
Computation of p-STAT3 reverse phase protein array (RPPA)-based signature
We analysed clinicopathological, normalised gene expression and RPPA data from the TCGA repository using its online bioinformatics tool (19). Estrogen receptor (ER)-positive breast cancers were analysed based on the RPPA proteomic levels. A total of 265 samples with available gene expression and RPPA data were considered as luminal (166 luminal A and 99 luminal B) according to the PAM50 computed on the cBioPortal website (20). Each of the RPPA assay samples available was assigned to one of two sample groups: 'Low p-STAT3 expression' samples correspond to those samples with RPPA expression smaller than the first quartile of all expression values for this RPPA assay, while 'high p-STAT3 expression' samples correspond to those samples with a RPPA expression greater than the third quartile. To identify the genes that were differentially expressed between the low- and high-expression groups, we performed a differential gene expression analysis using a Student's t-test comparing high vs. low p-STAT3 expression tumours using a Welch t-test with robust estimators of the mean and the standard deviation.
To identify the genes that would optimise the predictive power of our signatures, we evaluated using a nested 10-fold cross validation, the maximal Benjamini-Hochberg false discovery rate and the minimal gene fold change that would optimise the ability of the differentially expressed genes to predict the high/low status of the RPPA in luminal A and B patients together and separately. While the parameters were selected in a 10-fold cross validation, the procedure itself was assessed using a nested cross validation (21). This nested procedure allowed us to remove those RPPA assays that could not deliver signatures that we could further use for prediction (ROC curves AUC <0.6 in luminal A, B or A and B). After this process, we were left with 69 signatures presenting a relevant AUC for proteomic status prediction. Among others, p-STAT3 achieved significant prediction ability in both luminal A and B cancers. The expression levels of these signatures in the gene expression datasets were computed as previously described (22).
Patients and study design
The Breast International Group (BIG) 2–98 (ClinicalTrials.gov identifier of BIG 2–98: NCT00174655), is a multicenter, prospective, open-labelled, phase III adjuvant trial that randomly assigned patients to either anthracycline-based chemotherapy or taxane combinations (23). Women received definitive surgical treatment (mastectomy or breast-conserving surgery) for invasive breast adenocarcinoma with ≥1 positive axillary lymph nodes of ≥8 resected nodes. All patients provided written informed consent prior to study entry. The full details and the CONSORT diagram were previously reported (24).
Central pathology review and tissue microarray (TMA) construction
A primary tumour sample (blocks or slides) was required for the central pathology review. Primary tumour samples were stored centrally at the Institut Jules Bordet (Brussels, Belgium). The central pathology review was carried out at the European Institute of Oncology (Milan, Italy). The tumour grade was centrally reviewed. Immunostaining experiments for the localization of ER and progesterone receptor (PgR) and HER2 protein were carried out on consecutive tissue sections using an automated immunostainer (Autostainer; Dako, Glostrup, Denmark). The following primary antibodies were used: 1D5 monoclonal antibody (mAb) to ER (at 1/100 dilution), 1A6 mAb to PgR (1/800) and polyclonal antiserum (1/800) (all from Dako) to HER2 protein (23).
Only nuclear reactivity was taken into account for ER and PgR, and the results were recorded as the percentage of immunoreactive cells over at least 2,000 neoplastic cells. Fluorescent in situ hybridization (FISH) was carried out for HER2 according to the manufacturer's instructions (Vysis; Abbott Laboratories, Abbott Park, IL, USA). Positivity thresholds were ER ≥1%; PgR ≥1%; HER 2=3+ (>10% invasive tumour cells with intense and circumferential membrane staining) and/or FISH-positive (HER2:CEP17 ratio ≥2).
p-STAT3 staining
The biomarker protocol for the evaluation of p-STAT3 phosphorylation in association with the clinical outcome was approved by the Institutional Review Board of Hadassah Medical Center and the BIG2-98 Study Steering Committee. From the 2,887 patients randomised in the BIG 2–98 trial, 2,173 cases had tumour blocks that were centrally evaluated. A TMA was constructed from 950 blocks.
Paraffin blocks were submitted to the coordinating center and 4 cores from each tumour were collected and placed in 2 different TMAs; each TMA contains 2 cores of the same tumour. Two laboratories performed independent staining for p-STAT3 [immunohistochemistry (IHC) and immunofluorescence (IF)]: Each laboratory received a set of available BIG2-98 specimens in TMAs. The BIG 2-98 TMA set contained 19 slides with ~170 tissue cores per slide. Two slides containing ER-negative samples were of low quality, and although stained, could not be annotated. In total, 610 and 585 ER-positive samples were interpretable for p-STAT3 by IHC and IF, respectively.
IHC was performed experimentally. The tissue micro-array sections slides were deparaffinised with xylene rinses and then transferred through two changes of 100% ethanol. Endogenous peroxidase activity was blocked by a 5-min incubation in a 3% hydrogen peroxide buffer. Antigen retrieval was performed using Tris-EDTA buffer (10 mM Tris Base, 1 mM EDTA solution). Following antigen retrieval, the slides were incubated with blocking buffers at room temperature to reduce non-specific background staining and then incubated with primary antibody at 4˚C overnight (1:100 dilution of p-STAT3 antibody; cat. no. 9145-D3A7-XP; Cell Signaling Technology, Beverly, MA, USA) followed by 30 min of incubation with the secondary anti-rabbit antibody (Histofine® Simple Stain™ MAX PO (R), cat. no. 414141F; Nichirei Biosciences Inc., Tokyo, Japan). Staining was visualised using DAB.
The IHC nuclear p-STAT3 staining was determined and scored separately for each spot and specimen by two pathologists (R.S. and G.V.E.) who were blinded to the clinical pathological data and reached an agreed score for each spot. The staining was analysed according to the H-score (range, 0–300; intensity 1–3 × percentage of positive cells 1–100). For each spot, separate scores where provided for the tumour and stromal parts. For specimens that were uninterpretable, a score of 'not applicable' (N/A) was assigned. To define tumours as p-STAT3-positive, a cut-off point of >0 H score was selected, as well as analysing the data as a continuous variable. Specificity/sensitivity, performance and reproducibility tests of the p-STAT3 IHC were performed. Full slides from representative positive (n=9) and negative (n=8) TMAs were stained processed, and evaluated similarly as the experimental slides, for the indication of reproducibility and performance of the TMAs. In total, 8/9 positive TMAs were found to be positive on the full slides and 8/8 of the negative TMAs were found to be negative on the full slides, demonstrating 100% sensitivity and 89% specificity. As the controls for our procedure, we used HeLa cells without treatment that served as a negative control and serum-starved HeLa cells prepared with interferon-α (IFN-α) treatment that served as a positive control (all control slides were purchased from Cell Signaling Technology). The control slides were used for qualifying the procedure and not as an interpretation reference. The presence of a brown reaction product at the cell nucleus was indicative of positive reactivity.
In parallel, TMAs were stained using IF at the laboratory of J.F.B. For IF staining, the TMAs were deparaffinised and processed using the automated Ventana deparaffinization solution (Ventana Medical Systems, Inc., Tucson, AZ, USA) and CC1 antigen retrieval. The tissue sections were blocked for 30 min in 10% normal goat serum, 2% BSA in phosphate-buffered saline (PBS). The incubation with the p-STAT3 antibody was carried for 2 h, followed by 16 min of biotinylated goat anti-rabbit IgG (cat. no. PK6101; Vector Laboratories, Inc., Burlingame, CA, USA) at a 1:200 dilution (=7.5 µg/ml). Streptavidin-HRP (Ventana Medical Systems, Inc.) was applied for 12 min followed by incubation with Tyramide-Alexa Fluor 488 (cat. no. T20922; Invitrogen, Carlsbad, CA, USA) for 16 min. p-STAT3 antibody was from Cell Signaling Technology (cat. no. 9145-D3A7-XP) a rabbit monoclonal has been purchased in large amounts (5 ml), mixed and re-aliquoted to avoid batch-batch variation. All slides were in the same run.
The IF results were analysed using a semi-supervised free-scoring tool by a digital imaging system. Specifically, each slide was scanned using Pannoramic Flash (3DHistech Ltd., Budapest, Hungary) and each tumour/stromal section was exported into a tif. image by Pannoramic Viewer (3DHistech Ltd.). Image analysis was performed using Metamorph (Molecular Devices, Sunnyvale CA, USA) in which the number of nuceli was counted using the DAPI channel, and the level of green fluorescence (p-STAT3)/nuclei was quantified.
Tissue microarray construction, the determination of the proteomic status, patient selection, assay performance and data analysis are reported according to the Recommendations for Tumour Marker Prognostic Studies (REMARK) criteria (25).
Statistical analysis
In total, 39 gene expression datasets of expression profiles from >7,000 tumours were retrieved from public databases or authors' websites [36 previously described (26) and another 3 sets: PNC, METABRIC and TCGA (19,27,28)]. To ensure the comparability of the expression values across multiple data sets, we performed a 0.95 quantile normalization. Differences in the p-STAT3 expression signatures according to subtype were examined using the Kruskal-Wallis test. Distant metastasis-free survival was the primary survival end-point, which is defined as the time elapsing between breast cancer diagnosis and the date of systemic relapse. When distant metastasis-free survival data were not reported, relapse-free survival information was used if available. Survival plots according to the p-STAT3 signatures tertiles were drawn using the Kaplan-Meier method, and the significance of the survival differences were evaluated using the log-rank P-test. The association of the signatures with good or bad prognosis were computed using uni- or multivariate Cox regression analyses. All analyses were performed using the genefu package of R (v3.2)/Bioconductor (v1.18) statistical suite.
For the BIG 2–98 outcome analysis, patients were classified according to the presence of p-STAT3. The primary outcomes were disease-free survival (DFS) and overall survival (OS). DFS was defined as the interval from the date of randomization to the date of local, regional or metastatic relapse or second primary cancer or death for any cause. OS was calculated from the date of randomization to last follow-up or death from any cause. Univariate and multivariate models were computed with the use of Cox proportional-hazards regression. The Chi-square test for categorical data and unpaired Student's t-test for continuous variables were used in order to determine an association between p-STAT3 and clinical pathological parameters, and P-values <0.05 were considered to indicate statistically significant differences.
Results
Association of the p-STAT3 and p-STAT3 gene expression signature with clinical parameters and outcome in patients with ER-positive breast cancer
To capture the clinical importance of p-STAT3 in ER-positive breast cancer, we analysed breast cancer samples from the TCGA repository (19). Using the PAM50 classification model, patients were assigned to the main luminal breast cancer molecular subtypes: Luminal A and luminal B. We first assessed whether p-STAT3 expression (by RPPA) was associated with a particular subtype. Our analysis revealed that luminal A-type cancers were more likely to possess p-STAT3 high levels in comparison to luminal B-type cancers (Wilcoxon P=3e−6) (Fig. 1A).
We then derived a gene signature whose expression levels could predict adequately the p-STAT3 RPPA levels by computing the differentially expressed genes between tumour samples with high (upper quartile) and low (lower quartile) RPPA levels of p-STAT3. To capture the clinical relevance of the p-STAT3 expression signature in ER-positive breast cancer, we combined 39 publically available microarray datasets comprising over 7,000 breast cancer patients to build a pooled set of gene-expression profiles with available outcome data. Using the PAM50 classification model, patients were assigned to the main breast cancer molecular subtypes, namely luminal A, luminal B, HER2-enriched, basal-like and normal-like breast cancers. We first assessed whether the p-STAT3 expression signatures were associated with any particular luminal subtype. As expected, in the pooled set analysis, the p-STAT3 expression signature was significantly associated will luminal A-type cancers (P<0.01−10) (Fig. 1B). We then assessed whether p-STAT3 correlated with survival in patients with ER-positive breast cancer in cohorts where relapse data was available. As shown in Fig. 2 and Table I, the p-STAT3 expression signature was significantly associated with a good prognosis in all patients with luminal tumours (log-rank, P<0.01−10) (Fig. 2A). Similar results were found with patients treated with hormonal therapy only (2D log-rank, P=4.58e−9). Of interest, the p-STAT3 expression signature was able to identify patients with a good prognosis irrespective of the luminal subtypes (luminal A, log-rank, P=0.027; luminal B, log-rank, P=0.006) (Fig. 2B and C). Cox multivariate analysis confirmed the independent prognostic value of p-STAT3 (Table I).
Table ICox univariate and multivariate analysis of relapse data from the pooled analysis according to the p-STAT3 gene expression signature status. |
Association of p-STAT3 with clinicopathological characteristics and outcome in the BIG 2-98 randomised trial
We then confirmed our observations at the proteomic level in the context of prospective data from the BIG 2–98 repository. There were 610 and 585 ER-positive tumour TMAs available for the evaluation of p-STAT3 by IHC and IF, respectively. Evaluation was performed for the tumoral and stromal component separately (Fig. 3). Any level of p-STAT3 staining by IHC in the tumour or stroma was detected in 174 out of the 610 samples (28.5%). p-STAT3 (in the tumour or stroma) was associated with a smaller tumour size when analysed by IHC (Table II) or IF (data not shown). p-STAT3 expression between the tumour and stroma strongly correlated using IHC (R=0.67; 95% CI, 0.63–0.71) or IF (R=0.86; 95% CI, 0.84–0.88) as evaluated by Spearman's correlation. For the IF analysis, two patterns of staining were found (patchy and diffuse) that were not associated with different clinical or pathological parameters (data not shown).
Table IIAssociation of p-STAT3 (by immunohistochemistry) expression with clinicopathological parameters in ER-positive breast cancer. |
For the prognostic evaluations, all treatment arms were pooled. We examined p-STAT3 in the tumour or stroma using IHC and their association with DFS and OS end points. As summarised in Table III, there was no significant prognostic effect in the global population (all ER-positive), although a trend for an improved DFS was observed (HR, 0.72; 95% CI, 0.51–1.04; P=0.08). For the ER-positive/HER2 negative group, p-STAT3 was found to be prognostic using univariate (positive vs. negative) analysis for DFS (Cox univariate HR, 0.66; 95% CI, 0.44–0.98; P=0.04), but not OS (Cox univariate HR, 0.70; 95% CI, 0.43–1.15; P=0.16). Multivariate analysis, adjusting for the grade and number of positive lymph nodes, did not reach significance (Cox multivariate, HR, 0.76; 95% CI, 0.51–1.15; P=0.19). The analysis of ER-positive/HER2 negative samples from IF staining with diffuse distribution demonstrated the same trend of improved outcome in p-STAT3-positive tumours (DFS: HR, 0.59; 95% CI, 0.35–1.01, P=0.056; OS: HR, 0.53; 95% CI, 0.26–1.05, P=0.068) (data not shown).
Discussion
In the present study, we sought to better understand the associations between p-STAT3 the luminal phenotype and outcome of breast cancer, using an approach that integrated RPPA and microarrays gene expression data. Specifically, we were interested in identifying a p-STAT3 expression signature in luminal breast cancers which could be used for prognostic purposes. Although significant data exist on p-STAT3 target genes/signatures in triple-negative breast cancer models and datasets, relatively few have been identified for luminal breast cancers (29). Notably, Walker et al determined that ER-positive tumours co-express both p-STAT5 and p-STAT3 and identified a STAT3/STAT5 expression signature (albeit using a small number of samples) distinct from STAT3 which correlated with an improved outcome (18). In this study, we did not analyse p-STAT5 levels, as they are not represented in the TCGA RPPA data set. In addition to the p-STAT3 levels, total STAT3 is considered a 'surrogate' for p-STAT3, as STAT3 is positively regulated by p-STAT3. Unfortunately, we could not perform this analysis, as the total STAT3 protein levels were similarly not available from the TCGA RPPA dataset.
We also validated the observation that p-STAT3 is associated with a better outcome in ER-positive patients randomised in the BIG 2-98 trial. We found that tumours highly expressing p-STAT3 were associated with a smaller tumour size, luminal A phenotype and a good clinical outcome in comparison to those expressing low levels of p-STAT3. In a recent study, it was suggested that patients in the luminal A population were much more likely to possess a p-STAT3 high phenotype, but this was not associated with specific genes that were differentially expressed between the p-STAT3 high vs. low groups (29). Therefore, it was hypothesised that although STAT3 is activated variably between tumour subtypes, the overall mechanisms through which STAT3 affects gene expression are multifactorial and may not entirely correlate with STAT3 phosphorylation.
In a recent study, hormonal treatment did not improve outcome in patients with increased levels of protein inhibitor of activated STAT3 (PIAS3). It was suggested that an increased PIAS3 expression attenuates the effectiveness of tamoxifen (30). This is in support of our observation that STAT3 activation was associated with an improved outcome in ER-positive tumours.
Although our data strongly suggest that a high p-STAT3 and a p-STAT3 expression signature correlate with an improved outcome, these observations do not allow us to propose that targeting this molecule or pathway would have deleterious effects. For example, activating mutations in the PI3K pathway found predominantly in luminal breast cancers are associated with an improved clinical outcome (31). Despite this correlation, targeting this pathway with small molecule inhibitors in conjunction with anti-estrogens has led to improved outcomes in patients with metastatic disease (32).
As regards the IL-6/STAT3 signalling pathway, it was recently shown in pre-clinical models of luminal breast cancer that reversing its activity with an IL-6R blocking antibody (tocilizumab) restored a dependence on anti-estrogens through increased ER expression and elimination of CD133 stem cells (33). The potential benefits of targeting this pathway in endocrine-therapy resistant metastatic disease are presently being tested. Specifically, a clinical trial combining the JAK1/2 inhibitor ruxolitinib with endocrine therapy is ongoing (NCT01594216). Notably, the selection of inhibitor used could affect the outcome. Specifically, a JAK1/2 inhibitor can also target STAT5 and STAT1 which could influence response and prevent one from concluding that the outcome is due to targeting only STAT3.
In conclusion, this study provides evidence that the p-STAT3 status is a marker of favorable outcome in ER-positive breast cancer.
Acknowledgments
This study was funded by a Clinical Research Career Development Award from the Israel Cancer Research Fund grants (16-116-CRCDA) and from the Israeli Cancer Research Association (2017-0140).
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