Overexpression of miR‑361‑5p plays an oncogenic role in human lung adenocarcinoma through the regulation of SMAD2
- Authors:
- Published online on: October 23, 2018 https://doi.org/10.3892/ijo.2018.4602
- Pages: 306-314
Abstract
Introduction
Lung cancer remains the most common type of cancer worldwide with an estimated 1.8 million new cases in 2012 (12.9% of the total cancer cases) and accounting for 23.6% of total deaths (1). While treatment for lung cancer is available in the form of surgical resection, chemotherapy and radiation, the 5-year survival rate remains very low at only 16.6% (2,3). It is therefore important to gain a better understanding of the molecular mechanisms that are involved in lung carcinogenesis with the aim to identify diagnostic and prognostic markers for the early detection and a more targeted treatment of lung cancer.
Apoptosis plays an important role during development and in the maintenance of multicellular organisms through the removal of damaged, aged or autoimmune cells (4). Studies conducted on non-small cell lung cancer (NSCLC), which accounts for the majority of lung cancer cases (5), have demonstrated that the expression of B-cell lymphocyte xL (Bcl-xL), the other major prototype of the anti-apoptotic Bcl-2 gene, is elevated in NSCLC, leading to the inhibition of apoptosis and a poor prognosis (6). A previous study conducted by our group demonstrated that the silencing of Bcl-xL induced alterations in microRNA (miRNA or miR) expression in the A549 lung adenocarcinoma cell line, and the rippling effects of the alteration in miRNA expression towards target genes may contribute to the induction of apoptosis. miR-361-5p was one of the miRNAs found to be significantly downregulated following Bcl-xL silencing (7).
miRNAs are non-coding RNAs of approximately 19 to 23 nucleotides in length, which post-transcriptionally regulate gene expression (8). These regulatory elements play a role in a wide range of biological processes, including cell proliferation (9), differentiation (10), drug sensitivity (11) and apoptosis (12). A number of studies carried out in recent years have aimed at elucidating the specific miRNAs associated with apoptosis in cancer and their related target genes (13-17).
In this study, we aimed to determine whether miR-361-5p, which was downregulated in response to Bcl-xL silencing, as shown in our previous study (7), is involved in the regulation of the apoptosis of NSCLC cells and to investigate the molecular mechanisms that mediate these effects.
Materials and methods
Cell lines and culture conditions
The human lung adenocarcinoma cell lines, A549 (Cancer Research Malaysia, Subang Jaya Medical Centre, Subang Jaya, Selangor Malaysia) and SK-LU-1 (AseaCyte Pte. Ltd., Subang Jaya, Selangor, Malaysia), were maintained in RPMI-1640 (HyClone/GE Healthcare Life Sciences, Pittsburgh, PA, USA) and MEM-α (Gibco/Thermo Fisher Scientific, Waltham, MA, USA), respectively, containing 10% (v/v) fetal bovine serum (FBS) (HyClone/GE Healthcare Life Sciences), and maintained in 5.0% CO2 levels at 37.0°C in a humidified atmosphere.
Transfection with miRNA mimic and inhibitors
The cells were seeded 24 h prior to transfection with 80.0 nM miRIDIAN microRNA human miR-361-5p mimics or hairpin inhibitors (GE Healthcare Dharmacon, Lafayette, CO, USA) using the DharmaFECT transfection reagent (GE Healthcare Dharmacon), as per the manufacturer’s instructions. miRIDIAN microRNA Mimic Negative Control #1 and miRIDIAN microRNA Hairpin Inhibitor Negative Control #1 (GE Healthcare Dharmacon) were used as negative controls.
Combined transfection of siBcl-xL and miR-361-5p
The cells were plated 24 h prior to transfection with 100.0 nM Stealth RNAi (siBcl-xL) using Lipofectamine 2000 reagent (Invitrogen, Carlsbad, CA, USA), as per the manufacturer’s instructions. At 24 h post-transfection, the spent media were removed and the cells were transfected with miR-361-5p mimics or mimic negative control (NC).
Annexin V-FITC apoptosis assay
Apoptosis was detected using the FITC Annexin V apoptosis detection kit (BD Biosciences, Franklin Lakes, NJ, USA) at 72 h post-transfection, as per the manufacturer’s instructions. Apoptosis was detected in 1.0×104 cells using the BD FACSCanto™ II flow cytometer (BD Biosciences) and analyzed using BD FACSDiva™ software (BD Biosciences).
Caspase-3/7 activity assay
Caspase-3 and -7 activities were determined using the Caspase-Glo 3/7 assay kit (Promega, Madison, WI, USA), at 48 h post-transfection, as per the manufacturer’s instructions. Luminescence was detected using the GloMax Multi Luminescence Multimode Reader (Promega).
Zebrafish care and use
Experiments involving zebrafish were approved by the University of Malaya, Faculty of Medicine, Institutional Care of Use Committee (FOM IACUC) (Ethics reference no. 2015-181006/IBS/R/NO) and complied with all relevant animal welfare laws, guidelines and policies. Wild-type Danio rerio zebrafish embryos were cared for and maintained using standard husbandry practices.
Zebrafish microinjection
Approximately 150 zebrafish embryos (Zebrafish Laboratory, Department of Biomedical Science, Faculty of Medicine, University of Malaya, Kuala Lumpur, Malaysia) were injected with A549 cells transfected with 80.0 nm miR-361-5p inhibitors or their corresponding negative controls. The A549 cells re-suspended in serum-free RPMI were injected at the superficial location of the yolk near to the perivitelline space of the embryos using a FemtoJet Microinjector (Eppendorf, Hamburg, Germany) and InjectMan NI 2 Micromanipulator (Eppendorf) with constant injection pressure and injection time. The injection volume and cell suspension was calibrated to be approximately 100-200 cells/injection in each embryo. Following microinjection, the embryos were immediately incubated at 37°C overnight.
Whole mount caspase-3 immunofluorescence
At 12 h post-injection, the embryos were fixed in 4% paraformaldehyde overnight at 4°C, and then dehydrated in methanol for 2 h at −20°C. Following rehydration, the embryos were washed several times with 1% DMSO, 0.1% Triton in PBS (1X PDT) and blocked for 1 h at 25°C with gentle shaking in 10% FBS, 2% BSA in PBST (blocking buffer). The embryos were then stained with purified rabbit anti-active caspase-3 antibody (Cat. no. 559565, BD Biosciences) (1:500 dilution) for 2 h at 25°C followed by washes in PDT. The embryos were again blocked with blocking buffer, and then stained with anti-rabbit IgG Fab2 Alexa Fluor 647 Conjugate (Cat. no. 4414S, Cell Signaling Technology, Danvers, MA, USA) (1:500 dilution) overnight at 4°C. The following day, the embryos were washed with PDT prior to visualization and imaging using a Leica confocal laser-scanning microscope SPII and Leica Application Suite (LAS) software v5.0 (Leica, Wetzlar, Germany). Fluorescence was quantified using ImageJ Analyst [National Institutes of Health (NIH), Bethesda, MD, USA] software. The threshold was set to eliminate background fluorescence and embryos were analyzed to generate arbitrary fluorescence units.
Bioinformatics analyses of miRNA gene targets
The putative miRNA targets were identified using TargetScan Human v5.2, a database of conserved 3′UTR targets, found at http://www.targetscan.org/ (Whitehead Institute for Biomedical Research, Cambridge, MA, USA). TargetScan allows for the ranking of predicted miRNA targets based upon a total context+ score, which is the sum of the contribution of six targeting factors which include site type, site number, site location, local AU content, 3′-supplementary pairing, target site abundance, and seed-pairing stability. The total context+ score indicates the relative repression of mRNA, with low context scores being more favorable (18). Gene-annotation enrichment analyses of the predicted miRNA targets with total context+ scores of <0 were then performed using the web tool made up of an integrated biological knowledgebase and analytic tools (19) called Database for Annotation, Visualization and Integrated Discovery (DAVID) v6.7 at http://david.abcc.ncifcrf.gov/summary.jsp (SAIC Frederick, Inc. Frederick, MD, USA) using default parameters. Data from TargetScan 5.2 and DAVID were combined to generate a hypothetical pathway of the association between miR-361-5p and its gene targets.
Dual luciferase reporter assay system
The cells were plated 24 h prior to co-transfection with 40.0 ng of 3′UTR reporter constructs containing wild-type or mutated bindings sites and 80.0 nM of miR-361-5p mimic/hairpin inhibitor or mimic NC/hairpin inhibitor NC using DharmaFECT transfection reagent. Relative luciferase activity was assayed at 48 h post-transfection using the Dual Luciferase Reporter Assay System (Promega) and detected on the GloMax Multi Luminescence Multimode Reader (Promega). Luciferase activity was normalized to the internal control Renilla activity in each well.
Protein extraction and western blot analysis
Proteins were extracted at 48 h post-transfection using the NE-PER® Nuclear and Cytoplasmic Extraction kit (Thermo Fisher Scientific), as per the manufacturer’s instructions. Size separation by electrophoresis in 12.0% (w/v) SDS-PAGE was performed prior to transfer to nitrocellulose membranes. The membranes were blocked with 5% (w/v) non-fat skimmed milk for 1 h at 25°C and incubated overnight at 4°C with primary monoclonal rabbit antibodies: Mothers against decapentaplegic homolog 2 (SMAD2) (Cat. no. 3122, Cell Signaling Technology) (1:1,000 dilution) and GAPDH (Cat. no. 2188, Cell Signaling Technology) (1:10,000 dilution). The membranes were subsequently washed and incubated with secondary goat anti-rabbit IgG HRP-linked antibody (Cat. no. 7074, Cell Signaling Technology) (1:1,000 dilution) and anti-biotin HRP-linked antibody (Cat. no. 7075, Cell Signaling Technology) (1:1,000 dilution). Bands were visualized using Western Bright Quantum (Advansta, Menlo Park, CA, USA) on the Fusion FX7 system (Vilber Lourmat, Eberhardzell, Germany) and quantified using ImageJ Analyst software with band intensities normalized to GAPDH.
Gene rescue experiments
The cells were plated 24 h prior to transfection with 80.0 nM miR-361-5p mimics or mimic NC. At 6 h post-transfection, the spent media were removed and the cells transfected with 50.0 ng of plasmid expressing the SMAD2 gene without its 3′UTR (pCMV6/SMAD2) (OriGene Technologies, Rockville, MD, USA). Empty pCMV6 (OriGene Technologies) was used as a control. The protein levels of SMAD2 were determined 48 h post-transfection by western blot analysis, while apoptosis was detected using the FITC Annexin V apoptosis detection kit and Caspase-Glo 3/7 assay kit as described above.
Statistical analysis
All in vitro experiments were performed in triplicate independent experiments and presented as the means ± standard deviation (SD). In vivo experiments were performed with sample size of 15 zebrafish embryos per treatment group. An unpaired Student’s t-test was used to determine the statistical significance of the differences between 2 groups of data, where a P-value ≤0.05 was considered to indicate a statistically significant difference. The analysis of statistical significance between 3 or more groups of data was performed using one-way analysis of variance (ANOVA), followed by Dunnett’s Multiple Comparison post-hoc test where a P-value <0.05 was considered to indicate a statistically significant difference.
Results
Suppression of miR-361-5p expression promotes the apoptosis and induces cell cycle arrest of A549 and SK-LU-1 lung adenocarcinoma cell lines
The silencing of Bcl-xL in the A549 cells has been shown to downregulate miR-361-5p expression (7). In this study, to investigate the biological effects of miR-361-5p, miR-361-5p hairpin inhibitor and hairpin inhibitor negative control were transiently transfected into the lung adenocarcinoma cells, A549 and SK-LU-1. The results from RT-qPCR indicated that the transfection of miR-361-5p hairpin inhibitor successfully suppressed miR-361-5p expression levels, when compared to the hairpin inhibitor negative control (Fig. 1A), whereas transfection with miR-361-5p mimics significantly increased miR-361-5p expression (data not shown). Furthermore, the inhibition of miR-361-5p expression resulted in a significant increase in caspase-3/7 activities in both the A549 and SK-LU-1 cells (1.31±0.14 and 1.42±0.07 relative activity, respectively; Fig. 1B). Correspondingly, the detection of cell death at 72 h post-transfection, using flow cytometry after Annexin V-FITC/PI staining, indicated that the inhibition of miR-361-5p resulted in a significant increase in the percentage of apoptotic A549 and SK-LU-1 cells (25.10±2.94 and 43.93±1.53%, respectively) in comparison to the hairpin inhibitor negative control (Fig. 1C). However, no significant change in apoptosis and caspase activity was observed when miR-361-5p was overexpressed using mimics (data not shown).
Transfection with miR-361-5p mimics blocks siBcl-xL-induced cell death
To elucidate the association between Bcl-xL, miR-361-5p and apoptosis, a combination study was performed whereby the cells were first transfected with siBcl-xL followed by transfection with miR-361-5p mimics. The data revealed that the relative caspase-3/7 activity in the Bcl-xL-silenced cells was significantly decreased following miR-361-5p mimic transfection (Fig. 2A); a similar decrease in the percentage of apoptotic A549 and SK-LU-1 cells was observed (Fig. 2B), thus demonstrating that the overexpression of miR-361-5p was able to block siBcl-xL-induced cell death.
Transfection with miR-361-5p inhibitors increases caspase-3 expression in zebrafish embryo animal models
To analyze the in vivo effects of miR-361-5p on apoptosis, zebrafish were used as an animal model. A549 cells transfected with either miR-361-5p inhibitor or hairpin inhibitor negative controls were microinjected into zebrafish embryos. Following staining with anti-rabbit fluorophore-conjugated antibodies, the embryos were visualized using a Leica confocal microscope (Fig. 3A). The analysis of the fluorescent images using ImageJ software indicated that th caspase-3 levels were significantly increased by 6.41±1.04-fold in the embryos injected with miR-361-5p hairpin inhibitor-transfected cells in comparison to the embryos injected with hairpin inhibitor negative control-transfected cells (Fig. 3B). These results suggested that the downregulation of miR-361-5p expression was also able to induce apoptosis in vivo.
miR-361-5p is predicted to bind to SMAD2 3′UTR
To elucidate the underlying molecular mechanisms responsible for miR-361-5p-mediated apoptosis, an in silico approach was used to identify the putative target genes of miR-361-5p using the TargetScan database, followed by gene-annotation enrichment analyses using the web tool, DAVID, which categorizes the predicted miR-361-5p targets into apoptosis-related pathways. The enrichment of genes involved in cancer pathways indicated the possible involvement of the transforming growth factor β (TGFβ), phosphatidylinositol 3-kinase/protein kinase B (PI3K/AKT) pathway and mitogen-activated protein kinase (MAPK) pathways, together with the intrinsic and extrinsic apoptotic pathways as potential targets of miR-361-5p (Fig. 4). SMAD2, a cytoplasmic signaling protein, was identified as a predicted target of miR-361-5p, with a total context+ score of −0.12.
miR-361-5p directly binds to the SMAD2 3′UTR, decreasing its protein expression
Among the various target genes, SMAD2 was selected for further experimental validation as it contains two seed-recognizing miR-361-5p binding sites and is known to be involved in apoptosis and proliferation (20-22). The SMAD2 3′UTR and its corresponding mutant counterpart, were cloned into the 3′ end of the pmirGLO Dual-Luciferase miRNA Target Expression Vector (Fig. 5A). Relative Firefly luciferase activity, measured in the presence of miR-361-5p mimic/inhibitors or their respective negative controls were measured. The results indicated that the cells co-transfected with wild-type constructs (WT 3′UTR) and miR-361-5p mimics exhibited a substantial 0.35-fold decrease in relative luciferase activity in comparison to the cells in the control group (Fig. 5B). In the cells co-transfected with the mutant constructs (Mut 3′UTR), no significant differences were observed between the relative luciferase activities. This observation indicates that miR-361-5p can directly bind to the binding sequence on the 3′UTR of SMAD2, suppressing its gene expression; this was further verified by a decrease in SMAD2 protein levels as determined by western blot analysis (Fig. 5C and D).
The ectopic overexpression of SMAD2, without the 3′UTR, restores the effects of miR-361-5p on the A549 and SK-LU-1 lung adenocarcinoma cell lines
The results of this study indicated that miR-361-5p suppresses the apoptosis of A549 and SK-LU-1 cells, and inhibits SMAD2 expression. Therefore, it was predicted that the miR-361-5p-mediated inhibition of apoptosis may in part be attributed to the function of SMAD2. To confirm that the effects of miR-361-5p on apoptosis are mediated by SMAD2, gene rescue experiments were performed, whereby a SMAD2 expression vector (pCMV6/SMAD2, lacking its 3′UTR) was co-transfected into the A549 and SK-LU-1 cells along with the miR-361-5p mimic. The SMAD2 protein expression levels were measured at 48 h post transfection and it was found that transfection with pCMV6/SMAD2 ‘rescued’ or reversed the decrease in protein expression that was observed in the cells transfected only with miR-361-5p mimics (Fig. 6A and B). Furthermore, transfection with pCMV6/SMAD2 was able to partially reverse the inhibition of apoptosis induced by miR-361-5p (Fig. 6C and D). Taken together, these observations suggest that the oncogenic role of miR-361-5p in lung adenocarcinoma cells is at least partially due to the inhibition of its target gene, SMAD2.
Discussion
The anti-apoptotic Bcl-xL protein is frequently found to be overexpressed in lung adenocarcinoma, playing an important role in the inhibition of apoptosis, and is therefore a critical contributor to tumor development and progression (23). Our previous study demonstrated that the silencing of Bcl-xL triggers alterations in the miRNA expression profiles of A549 lung adenocarcinoma cells and the rippling effects of these miRNA expression alterations towards target genes may contribute to the inducement of apoptosis (7). miR-361-5p was one of the miRNAs found to be significantly downregulated following Bcl-xL silencing, and the present study aimed to determine the role of miR-361-5p in the apoptotic properties of Bcl-xL-silenced human lung adenocarcinoma cells.
Previous studies have demonstrated that in different cancer types, miR-361-5p can function as either a tumor suppressive or an oncogenic miRNA (oncomiR). For example, in colorectal and gastric cancer, miR-361-5p has been shown to act as a tumor suppressor, and to inhibit cancer cell proliferation, invasion and metastasis by directly binding and decreasing the expression of staphylococcal nuclease domain containing-1 (SND1) (24). miR-361-5p also functions as a tumor suppressor in castration-resistant prostate cancer (25) and hepatocellular carcinoma (26) by suppressing cell proliferation and triggering apoptosis, through the direct inhibition of signal transducer and activator of transcription 6 (STAT6) and C-X-C chemokine receptor type 6 (CXCR6), respectively. Furthermore, an increased expression of miR-361-5p has reported to be associated with a better prognosis in patients with breast cancer (27). Conversely, miR-361-5p functions as an oncomiR in cervical cancer, enhancing the promotion of growth and increasing the migration/invasion capacity of cells through mediation of epithelial-to-mesenchymal (EMT) transition (28).
The results of this study indicated that the inhibition of miR-361-5p expression led to an increase of the apoptosis of A549 and SK-LU-1 cells in vitro and in vivo. Furthermore, co-transfection experiments demonstrated that miR-361-5p overexpression was able to block the apoptosis induced by the silencing of Bcl-xL. These results suggest that miR-361-5p plays an oncogenic role in the regulation of apoptosis in NSCLC. The reasons that miR-361-5p plays differential roles in various cancer types is not yet well understood; however, it is suggested that the specific functions of miR-361-5p may be tissue- or cell-specific and may strongly be dependent upon their downstream targets. Further studies are warranted to elucidate the role of miR-361-5p in different cell lines and types of cancer.
In this study, to identify the cellular target through which miR-361-5p regulates apoptosis, bioinformatics analysis revealed that two regions in the SMAD2 3′UTR mRNA have perfect complementary binding sites to the seed sequence of miR-361-5p. Luciferase activity assays indicated that miR-361-5p binds to the 3′UTR sequence of SMAD2 mRNA, confirming that SMAD2 is a direct target of miR-361-5p. Given that miR-361-5p was downregulated in Bcl-xL-silenced A549 cells (7) and that it negatively regulates SMAD2 expression, we hypothesized that the targeting of SMAD2 may be a mechanism through which miR-361-5p acts as an oncomiR in NSCLC.
SMADS are a family of structurally related proteins that function as signal transducers of TGFβ family member proteins and play an important role in regulating cell growth inhibition, cellular senescence, differentiation and apoptosis (29-33). SMAD2, a receptor-regulated SMAD (R-Smads), has been proposed to be a tumor suppressor and the decreased expression of SMAD2 has been observed in human cancers (34-37). Emerging evidence has demonstrated the critical role of SMAD2 in apoptosis. For example, Yang et al (38) provided one of the first studies on SMAD2 functioning as a tumor suppressor and identified SMAD2 as a critical mediator of the TGFβ-induced apoptosis of prostate epithelial cells. In another study, Yang et al also demonstrated that SMAD2 together with Rb/E2F4, the cell cycle-regulated repressor element (CDE) and the cell cycle gene homology region (CHR), were able to suppress the expression of survivin, an inhibitor of apoptosis, and to induce the apoptosis of prostate epithelial cells (20). SMAD2 has also been shown to activate the DAP-kinase promoter, thus associating SMAD2 with mitochondrial-based pro-apoptotic events (32). Furthermore, various studies have indicated that SMAD2 can downregulate the X-linked inhibitor of apoptosis protein (XIAP), inducing caspase-3 activation and TRAIL-induced apoptosis (39-41).
In conclusion, the findings of the present study demonstrated that miR-361-5p acts as an oncogenic miRNA in NSCLC and that the downregulation of this miRNA induces apoptosis in vitro and in vivo. Its role as an oncogenic miRNA was attributed towards the direct targeting of SMAD2, a novel gene target. Notably, gene rescue experiments demonstrated that the miR-361-5p-mediated inhibition of the apoptosis of A549 and SK-LU-1 cells was reversed by the re-introduction of the SMAD2 protein. These results indicate that the downregulation of SMAD2 by miR-361-5p is likely to be an authentic mechanism of miR-361-5p-mediated oncogenesis in NSCLC, thus suggesting that the inhibition of miR-361-5p may be a promising therapeutic strategy for NSCLC.
Acknowledgments
The authors would like to thank Professor Ian Charles Paterson (Department of Oral and Craniofacial Sciences, Faculty of Dentistry, University of Malaya, Malaysia) for providing technical editing, language editing and proofreading of this manuscript.
Funding
This study was supported by the High Impact Research Grant under Grant UM.C/625/1/HIR/MOE/CHAN/016 and the University of Malaya Postgraduate Research Grant under Grant PG019-2016A. The founding sponsors had no role in the design of the study; in the collection, analyses, or interpretation of data; in the writing of the manuscript, and in the decision to publish the results.
Availability of data and materials
The datasets used and/or analyzed during the current study are available from the corresponding author on reasonable request.
Authors’ contributions
NO and NHN conceived and designed the experiments; NO performed the experiments; NO and NHN analyzed the data; NO and NHN wrote the manuscript.
Ethics approval and consent to participate
Approval was obtained from the University of Malaya, Faculty of Medicine, Institutional Care of Use Committee (FOM IACUC) (Ethics reference no. 2015-181006/IBS/R/NO) and complied with all relevant animal welfare laws, guidelines and policies.
Patient consent for publication
Not applicable.
Competing interests
The authors declare that they have no competing interests.
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