Identification of an HLA-A2-restricted CD147 epitope that can induce specific CTL cytotoxicity against drug resistant MCF-7/Adr cells
- Authors:
- Published online on: February 16, 2018 https://doi.org/10.3892/ol.2018.8085
- Pages: 6050-6056
Abstract
Introduction
Chemotherapy remains the best first line therapy for treatment of aggressive cancer. Whilst it can be effective in the short term, the high doses required can give rise to cancer cells that exhibit drug resistance, which is a major problem in current cancer treatment protocols. Recently, anti-mitotic drugs, including those targeting aurora kinases, mitotic spindle proteins and polo-like kinases, have proven disappointing underscoring the urgent need for the development of novel therapeutic strategies to overcome drug-resistance (1).
Cluster of differentiation (CD)147 (also known as EMMPRIN, basigin, M6, and tumor cell-derived collagenase stimulating factor), a glycoprotein belonging to the immunoglobulin superfamily, is enriched on the plasma membrane of tumor cells (2). The expression of CD147 is closely related to expression of the classical multi-drug resistance (MDR)-related transporter (MDR1) and its upregulation leads to a decrease in the chemosensitivity of some chemotherapeutic agents such as paclitaxel and curcumin. Studies in a variety of drug-resistant cell lines have shown that CD147 overexpression followed by RNA interference or use of anti-CD147 blocking antibodies can increase the sensitivity of tumor cells to chemotherapy drugs (3–5). Thus, overexpression of CD147 on MDR cell lines may play an important role in the resistance to chemotherapy drugs and CD147 is considered a potential therapeutic target (6). While antibodies against CD147 have been screened for cancer treatment, cell immunotherapy using CD147 as a target has yet to be explored. Therefore, in this study we investigate whether drug resistance can be overcome by targeting CD147 expressed on drug-resistance cells.
Cell immunotherapy represents a profound shift in the treatment of cancer and because it is a specifically targeted therapy it provides the possibility of fewer side effects compared to chemotherapy (7,8). Moreover, an optimal target can be identified for treatment of resistant tumor cells and cell immunotherapy applied for their removal. For example, generation of CD147-peptide specific reactive CTLs can be achieved using dendritic cells (DCs) loaded with the CD147 TAA peptide. However, some clinical trials have indicated that TAA peptide vaccines designed with tumor-associated antigen (TAA) fail to achieve a satisfactory effect in vivo. This may be owing to central and peripheral immune tolerance making activation and expansion of low affinity T cells difficult in vivo. Therefore, strategies to modify the CD147 peptide in order to enhance its binding to MHC and boost affinity of the peptide MHC complex for the TCR thereby inducing peptide-specific CTL activation and expansion in vitro are necessary (9).
Based on these findings, we believe CD147 could be a optimal target of CD8+ cytotoxic T lymphocytes (CTLs). However, TAA peptide vaccine designed directly with TAA failed to achieve a satisfactory effect in vivo (10). This may owing to the central and peripheral tolerance, it also make low affinity T cell difficult to be activate and expansion. Therefore, strategies should be taken to modify CD147 epitope peptide enhance its affinity to MHC molecule in order to boost the affinity of the peptide MHC complex to the TCR, thus leading peptide specific CTL activation and expansion in vitro. In our previous study, a mutated survivin epitope, identified by point mutation, could elicit specific CTL with crossreactivity against tumor cells expressing a wild-type survivin peptide in vitro (11,12).
In our previous study, we identified a point mutation in the survivin epitope that could elicit a specific CTL response in vitro with cross-reactivity against tumor cells expressing a wild-type survivin peptide. In this study, we identified CD147126–134, a low binding score wild-type peptide, using a computer-based program and then used point-mutation technology to substitute the L(leu) at position 2 of the wild-type peptide with K(lys), to generate a peptide capable of inducing specific CTLs. We found that these CTLs could recognize and lyse the wild-type CD147126–134 peptide expressed on the surface of drug-resistant cells.
Materials and methods
Cells and cell culture
The T2 cell line was purchased from ATCC and maintained in RPMI 1640 with 10% FBS (both Gibco; Thermo Fisher Scientific, Inc., Waltham, MA, USA), 100 IU/ml penicillin, 100 g/ml streptomycin (both Sigma-Aldrich, Madrid, Spain). The MCF-7 (HLA-A*0201+, CD147+), SKOV3 (HLA-A*0201+, CD147−), Hela (HLA-A*0201−, CD147+) was cultured in DMEM (Life Technologies, New York, NY, USA) containing 10% FBS, 100 IU/ml penicillin, 100 g/ml streptomycin. The SKOV3 cell line was transfected with expression vector pcdna3.1 containing HLA-A*0201 cDNA. The MCF-7/Adr (HLA-A*0201+, CD147+) cell line was cultured in DMEM supplemented with 10% FBS with 1 µg/ml Adriamycin (Selleck, Shanghai, China) (13). K562 cell line purchased from ATCC were used as natural killer cell-sensitive targets. K562 were cultured in IMDM (Gibco; Thermo Fisher Scientific, Inc.) supplemented containing 10% FBS, 100 g/ml streptomycin, 100 IU/ml penicillin.
Peptide epitope prediction and synthesizing
The sequences of CD147 was obtained from GenBank and analyzed for HLA-A*0201 binding motifs using BIMAS (http://www-bimas.cit.nih.gov/molbio/hla_bind/) and SYPEITHI (www.syfpeithi.de) (14). The wild-type peptide, CD147126–134, and mutated peptide, CD147126–134L2, were selected for additional evaluation. The HIVpol476–484 was used as a positive control for HLA-A*0201 binding ability. The HIVpol476–484 peptide was used as an irrelevant peptide to assess cytotoxicity in a Calcein-AM release assay. All peptides were synthesized by Chinapeptide (Shanghai, China) and the purity was detected to an average of approximately 98 percent by analytical mass spectrometry and high performance liquid chromatography. Peptides were dissolved at 10 mg/ml in DMSO (Sigma, St Louis, MO, USA) and stored at −70°C for long-term preservation. All peptides are list in Table I.
Peptide-binding assay. A peptide-induced stabilization assay was performed using the T2 cell line expressing the HLA A*0201 molecule (15). Briefly, T2 cells (1×106/group) were incubated in the presence of 20 µg/ml peptide in AIMV medium (Gibco; Thermo Fisher Scientific, Inc.) supplemented with 5 µg/ml human β2-microglobulin (Sigma-Aldrich, Spain) at 37°C in 5% CO2 for 18 h. T2 cells were washed twice with PBS to remove unbound peptide and resuspended in PBS containing 2% FBS. T2 cells loaded with peptide were incubated with FITC-conjugated HLA-A2 monoclonal antibody (BB7.2; BioLegend, San Diego, CA, USA). The expression level of HLA-A*0201 was measured using flow cytometry (Beckman Coulter, Miami, FL, USA) and the EXPO32 v1.2 software was used to analyze the results.
Flow cytometric analysis of CD147 expression
Cells (1×106 cells/group) were washed with PBS two times followed by resuspension in PBS with 2% FBS. Cells then were then incubated for 30 min at 4°C with FITC-conjugated monoclonal anti-CD147 antibody (BD Biosciences, San Diego, CA USA) or FITC-conjugated anti-mouse IgG1 isotype control antibody (BD Biosciences). After two washes with PBS, cells were resuspended in PBS to measure expression of CD147 by the flow cytometry and the EXPO32 v1.2 software was used to analyze the results.
Induction of peptide-specific CTLs
All subjects in this study were Han Chinese from Guangdong province, China, and all gave a written informed consent. This study was performed with the approval of the Institute Research Medical Ethics Committee of Guangzhou Pharmaceutical University. PBMCs used were isolated from buffy coats obtained from healthy HLA-A*0201 volunteer donors. Adherent monocyte-enriched PBMCs were maintained in X-VIVO (Lonza, Benicia, CA, USA) in the presence of 10 ng/ml recombinant human IL-4 and 1,000 U/ml recombinant human GM-CSF (both from Peprotech, London, UK). Half of the medium was replaced every 3 days. After 6 days, 10 ng/ml tumor necrosis factor-α (TNF-α) was added to the culture. On day 10, all mature DCs were collected, and partly mature DCs (1×105/group) were loaded with 20 µg/ml peptide at 37°C in 5% CO2 for 4 h. DCs (1×105/group) loaded with peptide were cocultured with PBLs (1×106/group) plated at a 1:10 ratio in 2 ml X–VIVO medium containing 10% FBS in 6-well plates, and 5 ng/ml IL-2, 5 ng/ml IL-15, and 10 ng/ml IL-7 (all from Peprotech) were added after 24 h. Half of the medium was replaced with media containing fresh cytokines every 3 days. Seven days later, the CTLs were reticulated with DCs loaded with peptide. After 3 cycles of reticulation, an ELISPOT (Dakewe, ShenZhen, China) assay and Calcein-AM release assay for cytotoxicity were performed.
ELISPOT assay
A human IFN-γ ELISPOT assay kit was used to determine the function of the CTLs, according to the manufacturer's instructions. CTLs induced by peptide CD147126–134 and CTLs induced by CD147126–134L2 were used as the effector cells. T2 cells loaded with or without peptide were used as target cells. Effector cells were incubated in duplicate for 18 h at 37 °C with target in a 96-well ELISPOT plate coated with anti-human IFN-γ antibody. A positive control (PHA) and a negative control (HIVpol476–484peptide) were included in all assays. Biotinylated antibody, streptavidin-enzyme conjugate and the enzyme substrate nitroblue tetrazolium was added to the plates in order, followed by a thirty-minute incubation at room temperature. Images of spots were captured by using a dissection microscope, then counted using Image Master Total Lab v1.10 software (Amersham Biosciences, Uppsala, Sweden).
Cytotoxicity calcein-AM release assay
To measure the cytotoxic response of the CTLs induced by target cells with different peptides, a calcein AM (Nippon Chemical Research TongRen Institute, Japan) release-based cytotoxic assay was performed as described previously. MCF-7, MCF-7/Adr, Hela, SKOV3, K562 and T2 loaded with or without peptide were used as target cells. CD147126–134-CTLs and CD147126–134L2-CTLs were used as the effector cells. An irrelevant peptide, HIV476–484, was used as a negative control. T2 cells were loaded with or without peptide for 4 h at 37°C in 5% CO2 and washed thrice. Target cells were labeled with Calcein-AM for 25 min at 37°C in 5% CO2 and then calcein-AM-labeled target cells were cocultured with effectors at different ratios (E:T=10:1, 20:1, 40:1) in 96-well-U-bottomed plates (Guangzhou Jet Bio-Filtration Co., Ltd., Guangzhou, China). After incubation for 4 h at 37°C in 5% CO2, cell-free supernatant was analyzed using a Microplate Reader (Thermo Fisher Scientific, Inc.) with excitation at 485 nm and emission at 535 nm. In blocking experiments, T2 cells loaded with peptide or tumor cell lines were preincubated with 10 µg/ml anti-HLA-A2 antibody (BB7.2: mouse IgG2a) or isotype control antibody (L243: mouse IgG2a) for 1 h. Each assay was performed in triplicate. The percentage of specific lysis was determined as: (ODexperimental release-ODspontaneous release)/(ODmaximal release-ODspontaneous release) ×100. The labeled targets in the spontaneous release well were incubated with 2% Triton X-100 and the labeled targets in the maximum release well were incubated with medium alone.
Statistical analysis
Statistical analysis was performed using GraphPad Prism 5 software (GraphPad Software, La Jolla, CA, USA). All results are expressed as the mean ± SEM and statistical analyses were performed using the Student's t-test. P<0.05 was considered to indicate a statistically significant difference and ns, no statistical significance.
Results
Expression of CD147 in drug-resistant and drug-sensitive cell lines
Flow cytometry was used to compare the surface expression of CD147 on drug-resistant and drug-sensitive cell lines. drug-resistant cell lines MCF-7/Adr (90.6%) expressed a higher level than drug-sensitive MCF-7 (27.3%) or Hela drug-sensitive cell lines (40.0%) (Fig. 1).
Identification of CD147 peptide candidates
We first screened for a low affinity epitope peptide from the CD147 protein sequence and position 2 is a hydrophilic amino acid followed by substitution with a hydrophobic amino acid. CD147126–134 and CD147126–134L2 peptides were identified from candidate HLA-A*0201 CD147 epitopes using two different HLA-peptide-binding prediction programs, BIMAS and SYFPEITHI. In CD147126–134L2 the Lys(K) at position 2 of CD147126–134 is substituted with (L)leu. As shown in Table I, mutated peptide CD147126–134L2 showed significantly higher binding to the HLA-A*0201 molecule compared with the wild-type CD147126–134. Moreover, this binding was even higher than the positive control peptide, HIVpol476–484, which was generated from the HIV pol protein and was previously reported to have high binding affinity for the HLA-A*0201.
MHC stabilization assay
A T2 cell peptide-binding test was used to evaluate the binding ability of mutated peptides to HLA-A*0201 molecules. Because peptide binding to HLA-A2 molecules can increase the expression of HLA-A*0201 molecules, high affinity peptides can significantly upregulate HLA-A*0201 compared to low affinity peptides. As shown in Fig. 2, the CD147126–134L2 (Fig. 2D) peptide induced an increase in cell surface HLA-A*0201 stabilization compared to the positive control, HIVpol476–484 peptide (Fig. 2C). In contrast, the wild-type peptide CD147126–134 (Fig. 2B) showed no increase over background (T2 cells without peptide) (Fig. 2A). Thus, the high binding score of the mutated CD147126–134L2 peptide correlates with high affinity to HLA-A*0201 molecules, as demonstrated by this MHC stabilization assay. These results suggest that the mutated CD147126–134L2 peptide may be more immunogenic than the wild-type CD147126–134 peptide.
CD147 reactive CTLs can lyse peptide-pulsed T2 target cells
Previous studies have shown that a variety of known CTL epitopes exhibit high to intermediate affinity binding to HLA class I molecules and have the capacity to induce peptide-specific CTL responses. Therefore, to investigate the antigen specificity of peptide-induced CTLs, we evaluated their ability to secrete IFN-γ in response to target cells. To this end, T2 cells pulsed with the mutated CD147126–134L2 or wild-type CD147126–134 peptide were used as targets in IFN-γ ELISPOT and cytotoxicity assays.
In the IFN-γ ELISPOT assay, CD147126–134L2 was found to prime significantly more epitope-specific CTLs than CD147126–134 (Fig. 3). In addition, the frequencies of IFN-γ producing T cells induced by CD147126–134L2 was markedly increase compared to the negative control. Importantly, when T2 cells were loaded with wild-type CD147126–134 peptide, the mutated CD147126–134L2 peptide-induced CTLs still possessed the capacity for IFN-γ secretion at a level equivalent to coculturing with T2 cells pulsed with CD147126–134L2 (Fig. 3A). In contrast, T2 cells loaded with CD147126–134 elicited minimal IFN-γ secretion and induced only negligible T-cells responses (Fig. 3B). Further, T2 cells loaded with wild-type CD147126–134 peptide could be lysed by the CTLs induced by CD147126–134L2. Also, CTLs induced by CD147126–134L2 could efficiently lyse CD147126–134L2 peptide-loaded T2 cells, but did not irrelevant peptide HIVpol476–484 peptide-loaded T2 cells at any effector-target ratio (Fig. 3C). In addition, CTLs induced by CD147126–134 only secrete a small amount of IFN-γ against CD147126–134 or CD147126–134L2-loaded T2 cells (Fig. 3D). These results demonstrate that the mutated CD147126–134L2 peptide can elicit CTLs that have the ability to cross-recognize and specifically lyse T2 cells loaded with the wild-type CD147126–134 peptide.
CD147 peptide-specific CTLs recognize CD147 positive MCF-7/ADR cells, but not CD147 negative tumor cells
We found that CD147126–134L2 peptide-specific CTLs can efficiently recognize wild-type peptide-pulsed T2 cells and this recognition leads to the production of IFN-γ. Next, to investigate if these CTLs can lyse wild-type CD147 peptide naturally presented on tumor cells, we used the MCF-7 (HLA-A*0201+, CD147low+) and the MCF-7/Adr (HLA-A*0201+, CD147high+) cell lines as target cells, and the SKOV3 (HLA-A*0201+, CD147−) and Hela (HLA-A*0201−, CD147+) cell lines were included as negative controls. Target cells were seeded and cocultured with the CD147126–134L2 peptide-specific CTLs at different effector to target ratios for 4 h at 37°C in 5% CO2. As shown in Fig. 4A, CD147126–134L2-specific CTLs can lyse both MCF-7 and MCF-7/Adr drug-resistance cell lines, but only minimally lysed the HLA-A*0201-negative (Hela) and CD147-negative (SKOV3) lines at any effector to target ratio (Fig. 4A). In contrast, the cytotoxic effect on the MCF-7/Adr (HLA-A*0201+, CD147high+) cell line was dramatically increased (approximately 40.6%) at E:T=40:1 (Fig. 4A). In addition, CTLs induced by wild-type peptide CD147126–134 showed only a very weak effect on MCF-7/Adr cells (HLA-A*0201+, CD147high+) (Fig. 4B).
These results illustrate two points: i) the wild-type CD147126–134 peptide can be naturally processed and presented by tumor cells, and ii) CD147 epitopes processed and presented on tumors can be cross-recognized and lysed by CD147126–134L2-specific CTLs. Furthermore, these experiments indicate that the low level of CD147 expression on drug-free tumor cells is not easily recognized and lysed by CD147126–134L2 peptide-specific CTLs. Interestingly, flow cytometry revealed that the CD147 expression level on MCF-7/Adr cell lines was higher than that of the MCF-7 cell line, which may explain the higher sensitivity of these cells to lysis.
Antibody inhibition assay
To confirm whether the reactivity of CD147126–134L2 peptide-specific CTLs was restricted by the HLA-A2, an antibody blocking assay was performed and calcein-AM release used as a readout. For these experiments, the MCF-7/Adr cell line and peptide-pulsed T2 cells were used as target cells. The specific lysis of CD147126–134L2-induced CTLs incubated with T2 cells loaded with wild-type CD147126–134 peptide or mutated CD147126–134L2 peptide was blocked by anti-HLA-A2 antibody, but not by the isotype control antibody, as shown in Fig. 4C. In addition, when anti-HLA-A2 antibody was added to the cytolytic assay, the specific lysis of the MCF-7/Adr drug-resistant cell line by CD147-specific CTLs dropped below 5% (Fig. 4C). These results indicate that the CD147126–134L2 peptide-induced CTLs recognize and lyse cells expressing the mutated peptide or the wild-type peptide both in an antigen-specific and HLA-A*0201-restricted manner.
Discussion
Chemotherapy plays an important role in treatment of cancer patients; however, the long-term use of chemotherapeutic drugs can result in MDR and death. Moreover, there has not been significant progress toward reducing multidrug resistance-induced morbidity and mortality despite myriad advances in treatment options (16,17). The targeting of drug-resistance cells using cell-based immunotherapy is a relatively new strategy that shows promise towards overcoming multidrug resistance (18).
CD147 is overexpressed in many MDR cell lines, and the association between its expression and resistance to chemotherapeutic drugs has been well established. For example, Toole and Slomiany (19) found that the interaction of CD147 with CD44 and hyaluronan can co-regulate MDR to anticancer drugs. Many approaches have been used to deplete drug-resistance cells such as use of an anti-CD147 antibody to inhibit tumor cell proliferation in vivo in a mouse model (20). However, the limitation with antibody treatments is that often only a small amount of antibody can penetrate into the tumor tissue, so that antibody therapy in the body is less effective than in vitro. The overexpression of CD147 in chemoresistant cells makes this molecule an ideal target for cell immunotherapy that specifically targets cells that survive chemotherapy.
T cells recognizing high affinity, immunodominant epitopes from self-antigens are deleted in the thymus thereby leading to immune tolerance. T cells that recognize low affinity epitopes are difficult to be activated. Great effort has been spent in recent years to design anchor-modified peptides in order to overcome the failure of activation of T cells that recognize low affinity epitopes (21). Engels et al demonstrated that the affinity of peptides and MHC molecules is particularly critical for peptide cross-presentation and induction of cytokine production in vivo (22). Thus, peptides that exhibit higher affinity for MHC molecules may create a peptide-MHC complex which can interact more efficiently with the peptide-specific TCR (23). In this study, flow cytometric analysis revealed that CD147 is overexpressed on drug-resistance cells, which is consistent with other research. Therefore, we screened the CD147 protein sequence to identify a low-binding score peptide using HLA-peptide-binding prediction software and identified CD147126–134. We then replaced the primary anchor residue, Lys(K), in position 2 with leu (L), resulting in a peptide with a very high binding score (CD147126–134L2). Moreover, the T2 affinity assay clearly showed that CD147126–134L2 has strong binding capacity compared with the positive control (HIVpol476–484) and wild-type CD147126–134 peptide.
In vitro priming and expansion of the CD147 peptide-specific CTLs was clearly shown by IFN-γ Elispot. These studies also showed that the CD147126–134L2 peptide-specific CTLs secrete markedly more IFN-γ in response to T2 cells loaded with CD147126–134L2 than with CD147126–134. Moreover, the CD147126–134L2-stimulated CTLs cocultured with CD147126–134 loaded T2 cells also showed a similar level of IFN-γ secretion. Cytotoxicity assays were performed by coculturing the CD147126–134L2 or CD147126–134 peptide-primed CTLs with peptide-pulsed T2 target cells. The results showed that CTLs induced by CD147126–134L2 can not only lyse T2 cells loaded with CD147126–134L2, but also those loaded with wild-type CD147126–134 peptide. In contrast, the CTLs induced by CD147126–134 showed a very weak cytotoxicity to the CD147126–134 or CD147126–134L2 peptide loaded T2 cells. Although there is a single amino acid difference between the mutated and original peptides, CTLs induced by the mutated peptide can cross-recognize wild-type peptide, as was verified by our T2 target cell experiment.
Next we used tumor cells as target cells to verify our hypothesis, and found that HLA-A2 positive MCF-7/Adr cells, which highly express CD147, can be specifically recognized and lysed by the CTLs induced by CD147126–134L2. In contrast, Hela cells (HLAA2−, CD147+) and SKOV3 cells (HLAA2+, CD147−) could not be lysed by the CTLs induced by CD147126–134L2, and the cytotoxic effect was blocked by HLA-A2 antibody. This demonstrates that the wild-type CD147126–134 peptide is endogenously processed and presented by MCF-7/Adr cells and that the cytotoxic effect occurs in an HLA-A2-restricted manner. Thus, high affinity peptides such as the mutant peptide in this study can bind to MHC complexes with longer half-lives resulting in more efficient T cell activation. Once activated, T cells are then able to recognize the wild-type antigen peptide on the target cell, including antigens on cancer cells (24).
In conclusion, we identified a novel HLA-A*0201-restricted peptide (CD147126–134L2) and showed that specific CTLs can be elicited by priming T cells with DCs pulsed with this peptide. Moreover, these CTLs are able to specifically and effectively lyse HLA-A2 positive MCF-7/Adr drug-resistant cells which highly express CD147. Therefore, targeting of CTLs against CD147 show promise as an immunotherapy aimed at eliminating drug-resistant cancer cells.
Acknowledgements
This project was supported by the National Natural Science Foundation of China (grant nos. 31300737 and 31400149), the Scientific and Technological Project of Guangdong Province (grant nos.2014A020212311 and 2016A020215157), and a grant from the Natural Science Foundation of Guangdong Province (grant nos. 2014A030313586 and 2015A030310310).
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