Integration sites of human papillomavirus 18 in esophageal cancer samples

  • Authors:
    • Shuying Li
    • Zhanjun Liu
    • Jianghong Yan
    • Shangbo Sun
    • Xiaoli Hou
    • Dianqing Liu
    • Ke Zhang
    • Jin‑Tao Li
  • View Affiliations

  • Published online on: March 7, 2018     https://doi.org/10.3892/ol.2018.8191
  • Pages: 7438-7442
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Abstract

To investigate the association between human papillomavirus (HPV) infection and esophageal cancer, genomic DNA was isolated from 189 samples obtained from patients with esophageal carcinoma, and HPV DNA was identified using the polymerase chain reaction (PCR) with the following specific primers: My09/11 for HPV L1 and HPV18 E6 for HPV18. The HPV18 gene products were sequenced to identify the HPV genotype and the HPV18 integration site was verified using PCR amplification of papillomavirus oncogene transcripts. HPV18 oncogene transcript products were ligated into a pMD‑18T plasmid vector and sequenced to confirm the physical location of HPV18 integration. Of the 189 samples, 168 were positive for HPV, of which 33 were positive for HPV18. The sequencing analysis identified two HPV18 E6‑positive samples containing one mutation and two samples containing two mutations in the viral DNA. In total ~600 bp of the HPV18 oncogene transcript was detected in three esophageal cancer samples. Sequence analysis revealed that, in two patients, the HPV18 infection was integrated into human chromosome 5, whereas in the remaining sample the virus was integrated into human chromosome 2. The high prevalence of HPV18 infection suggested that HPV18 infection is a pathogenic factor in esophageal carcinoma progression. The integration of HPV18 DNA into the host cell genome suggests that persistent HPV infection has a role in esophageal epithelial cell malignant transformation and carcinogenesis.

Introduction

Esophageal carcinoma (EC) is the sixth most common type of cancer in China (1). Although the contributions of environmental factors, lifestyles and trace elements have been extensively investigated, the etiology of esophageal cancer has not yet been established (24).

In 1982, Syrjänen (5) first proposed that esophageal cancer is associated with HPV infection. Since then, numerous studies have supported this hypothesis (610).

In a previous study, HPV18 was detected and localized in human chromosome 8 in the esophageal squamous cell carcinoma EC109 cell line, which supported the hypothesis that HPV infection is a pathogenic factor in the development of esophageal cancer (11). Moreover, chronic high-risk HPV infection and the integration of elements of the viral genome into the human chromosome have proven to be pathogenic factors for cervical malignant transformation and lesions (12,13).

Integrated and episomal HPV may be distinguished by amplifying papillomavirus oncogene transcripts (APOT) using the polymerase chain reaction (PCR), and Klaes et al (14) proposed that the location of HPV genome implantation in the human chromosome is an appropriate molecular tag for pathological lesions and the development of cancer. Nevertheless, few reports (1114) have described the HPV integration site. The objective of the present study was to assess HPV18 infection and its location in the human genome in the setting of EC.

Materials and methods

Sample collection

Fresh surgically resected tissue samples from 189 patients who were pathologically diagnosed with esophageal carcinoma were obtained between March 2013 and December 2015; written informed consent was obtained from each specimen donor. All specimen donors were treated in the Pathology Department of Tangshan People's Hospital (Hebei, China); all patients came from the Tangshan area. The mean age was 58 years (range, 40–76 years), of which 136 were male and 53 female. All samples were esophageal squamous cell carcinoma, of which 30 were well differentiated, 104 were moderately differentiated and 55 were poorly differentiated. The samples were separated into 98 early-stage, 63 middle-stage and 28 late-stage specimens, according to the sixth and seventh editions of International Union Against Cancer classification (15); all fresh samples were stored at −80°C prior to the experiments.

Cells and materials

The following media were used in the present study: Dulbecco's modified Eagle medium (DMEM) with antibiotics (100 U/ml penicillin/streptomycin), fetal bovine serum, trypsin, and these reagents were provided by BioTek China, Beijing, China. QIAamp DNA Mini kit, Qiagen RNeasy Mini kit and Qiaquick Gel Extraction kit were provided by Qiagen GmbH, Hilden, Germany. Takara Ex Taq kit (including buffer, MgCl2, dNTPs, Taq DNA polymerase) was provided by Takara Bio, Inc., Otsu, Japan. The 293 cell line obtained from National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention (Beijing, China).

Cell culture conditions

The 293 cell line were cultivated using 10 ml media (DMEM with 100 U/ml penicillin-Streptomycin and 10% fetal bovine serum) in a 10 cm petri dish and maintained at 37°C in humidified atmosphere, containing 5% CO2/and 95% air. Cell media were changed every 2–3 days.

Cell collection and DNA extraction

The 293 cells were washed twice using phosphate buffer saline (PBS) when the 293 cells were allowed to reach 90% confluence. Subsequently, cells were digested using 2 ml 0.25% trypsin (including 0.02% EDTA), which was terminated using 2 ml fresh cell medium, and transferred to 10 ml flasks. Cells were centrifuged at 3,000 × g for 5 min at 4°C and the supernatant was removed. DNA extraction was performed using QIAamp DNA Mini kit, according to the manufacturer's protocol.

Plasmid

The plasmid HPV18/pBR322 (National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, China) DNA, containing the whole HPV18 genome, and DNA from the 293 cell line were stored at −20°C.

DNA extraction

DNA was extracted from each tissue specimen (~25 mg) using the QIAamp DNA Mini kit according to the manufacturer's protocol, and each sample was eluted with ~50 µl sterilized distilled water. The extracted DNA was stored at −20°C until further processing.

Detection of specimen quality and HPV DNA

The quality of the DNA from each tissue sample was assessed using PCR with β-actin primers (16). DNA from the 293 cell line was used as a control to ensure specimen quality.

HPV DNA for each specimen was analyzed by PCR using the primers My09/11 for HPV L1 (My09, 5′-CGTCCMARRGGAWACTGATC-3′; MY11, 5′-GCMCAGGGWCATAAYAATGG-3′, PCR product ~450 bp) (17) and HPV18 E6-specific primers (forward, 5′-GCGCTTTGAGGATCCAACAC-3′ and reverse, 5′-ATTCAACGGTTTCTGGCAC-3′; the PCR product generated was ~335 bp). The HPV18 E6 primers were designed on the basis of the genomic sequence of HPV18 in GenBank (accession number X05015.1).

Each PCR amplification was performed in a volume of 25 µl, containing 1X Ex Buffer (MgCl2-free), 2.5 mM MgCl2, 0.2 mM dNTPs, 1 U Ex Taq DNA polymerase, and 5 pmol each of the aforementioned forward and reverse primers. A total of 100 ng extracted DNA template and control DNA were added to the reaction mixture. The following thermal cycling profile was employed: 95°C for 5 min, followed by 31 cycles of 95°C for 30 sec, 55°C for 30 sec and 72°C for 30 sec. The last cycle was followed by a final extension step of 5 min at 72°C.

Sequence analysis products of type-specific HPV18

To confirm the specificity of the HPV18 primers, the HPV18 E6-positive PCR products were purified using a Qiaquick Gel Extraction kit according to the manufacturer's protocol. The products were then ligated into the pMD-18T vector prior to being subjected to sequence analysis by Beijing Rui Bo Xing ke Biological Technology company using DNAman software v6.0 (www.shinegene.org.cn/q2.html).

Reverse transcription (RT)

Total RNA was extracted from each sample using a Qiagen RNeasy Mini kit according to the manufacturer's protocol. RT was performed in a total volume of 25 µl consisting of 4 µl 5X first-strand buffer, 1 µl dNTPs (0.2 mM), 1 µl RNase inhibitor (40 U), 100 ng total RNA, 1 µl (dT)17-p3 (10 pmol primer, GACTCGAGTCGACATCGATTTTTTTTTTTTTTTTT), 1 µl SuperScript reverse transcriptase (200 U) and 9.2 µl RNase-free water. The RNA was reverse-transcribed at 42°C for 50 min and deactivated at 70°C for 15 min, and the resultant product was stored at 4°C.

To verify that each tissue sample was harboring HPV with detectable HPV18 E7 mRNA, human GAPDH was employed as a reference gene for RT-PCR using the following primers: GAPDH forward, 5′-CATCACCATCTTCCAGGA-3′ and reverse, 5′-GTCTACCACCCTATTGCA-3′ (13). This approach guaranteed that the integrity of all mRNA extracted from each sample was sufficient for the detection of viral-cell fusion transcripts.

Detection of viral-cell fusion transcripts

The first PCR was prepared according to the method of Klaes et al (14), in a volume of 25 µl using HPV18 E7-specific forward primers for p1-18 (5′-TAGAAAGCTCAGCAGACGACC-3′) in HPV18 gene sequence 816…836 and reverse primers for p3 (5′-GACTCGAGTCGACATCG-3′); the reaction system consisted of 1X Buffer, 10 pM primers, 2.5 mM MgCl2, 0.2 mM dNTPs, 100 ng cDNA product and 1 U Ex Taq DNA polymerase. PCR was performed according to the following steps: 95°C for 5 min, followed by 30 cycles at 95°C for 1 min, 56°C for 1 min and 72°C for 3 min. The final cycle consisted of 72°C for 5 min, and the sample was stored at 4°C.

Nested PCR was performed under identical conditions (except for the annealing temperature, which was 67°C) and the primers: the HPV18 E7-specific forward primer p2-18 (5′-ACGACCTTCGAGCATTCCAGCAG-3′) in HPV18 gene sequence 831…853 and the reverse primer (dT)17-p3; 5 µl PCR product from the first round was used as the template. The two primers span bp 814–835 (p1-18) and bp 830–853 (p2-18) in the HPV18 genome. To ensure the specificity of these primers, a negative control (293 cell DNA template) was added to each reaction system.

Integration sites analysis

The HPV18 E7 PCR products for p2-18 were cloned into the pMD-18T vector. Subsequently, Beijing Rui Bo Xing ke Biological Technology sequenced. The results were blasted using the National Center for Biotechnology Information (blast.ncbi.nlm.nih.gov/Blast.cgi?PROGRAM=blastn&PAGE_TYPE=BlastSearch&LINK_LOC=blasthome), HPV18 integration sites in human chromosome were determined for every specimen.

Results

Detection of specimen quality and HPV DNA

β-actin expression in a total of 189 samples was investigated to evaluate the DNA quality of the tissue specimens. A 290-bp β-actin product was detected in each sample. This result suggested that the DNA from each specimen was of high quality and satisfied the requirements for further experiments. Of the 189 specimens, 168 were positive for HPV DNA, as assessed using MY09/11 primers (Fig. 1A); 33 of these specimens were positive for HPV18 (Fig. 1B), assessed using the HPV18 E6-specific primers.

Sequence analysis for type-specific HPV18 products

The sequencing results of samples positive for HPV18 were analyzed with the DNA man software and compared with the HPV18 sequence provided in GenBank (X05015.1). The results of this analysis verified that four of the HPV18 E6-positive samples harbored mutations in the viral DNA: Two samples contained one mutation; the other two contained two mutations (Fig. 2).

HPV18 integration-derived transcripts in HPV18 E6-positive esophageal cancer samples

HPV18 integration sites were identified in all HPV18 E6-positive specimens. A ~600 bp HPV18 E7 PCR product was identified in three samples using p2-18 primers. The HPV18 E7 PCR product obtained (using primer p2-18) from the three samples was ligated into the pMD-18T vector, and sequence analysis of the HPV18 integration sites was performed. The results of this sequencing analysis indicated that the HPV18 E7 gene PCR product, amplified using the p2-18 primer in these three samples, was part of the HPV18 E7-E1 sequence (Fig. 3A-C). Other sequences from two samples were similar to sequences from human chromosome 5 (Fig. 4A and B) and human chromosome 2 (Fig. 4C).

Discussion

The HPV positivity rate of 168/189 observed in the present study is atypically high, comparing with previous studies in esophageal cancer (10,18). This result indicated that the prevalence of HPV infection for esophageal cancer in the Tangshan area, and, taken in combination with previous studies (610), evidence indicates HPV may serve an etiological role in esophageal cancer. A total of 17.5% of 189 samples were positive for HPV18. The sequence analysis of PCR products positive for HPV18 E6 DNA identified two samples with one mutation in the viral DNA and two samples with two mutations. The results indicated that the samples harbored HPV18, and the high rates of HPV18 infection indicated that HPV18 has an etiological role in the development of esophageal carcinoma. Only part of HPV genome integrates into the human genome, and the HPV genome is usually cleaved at gene E1 or E2 (14,19,20). The integration of HPV DNA, including the E6 and E7 genes, into the human genome generally includes the 5′ ends of the viral gene and the 3′ ends of the human cell sequences (14,19,21,22). Viral-host cell-gene interconnection resulting from HPV DNA integration mediates DNA replication and recombination, with HPV E6 and E7 oncogene amplification being involved in tumorigenesis (23). HPV integration sites may be used as individualized biomarkers for cancer tumorigenesis (24). Chronic HPV infection results in the integration of the viral genome, which alters the expression patterns of viral oncogenes and integration-associated host-cell genes; this integration may have a vital function in the progression of cervical damage and cancer tumorigenesis (25).

Applying APOT analysis to 33 HPV18-positive samples, of which three HPV18-positive samples of integration-derived transcripts were: Two cases of late-stage, poorly differentiated cancer in men (aged 49 and 57 years); one case of early-stage moderately differentiated cancer in a woman (aged 71 years). Three patient samples is too few to be able to indicate that HPV18 integration is associated with sex, age, degree of differentiation or pathological stage of esophageal carcinoma, supporting the hypothesis that HPV-infected cells undergo preferred selective outgrowth in pre-neoplastic lesions that express the human-genome-integrated viral oncogenes E6 and E7. HPV18 integration was identified in esophageal cancer cells from three patient specimens, integrating into chromosomes 2 and 5. Taken together with the integration of HPV into the genome of EC109 cells, these results indicated that HPV randomly integrates into the host cell and that the HPV viral genome was cleaved at the E1 and E2 open reading frames prior to integration. The E2 gene serves as a pivotal modulator for E6 and E7 gene expression in the viral life cycle (26,27). In a great proportion of HPV-infected patients, HPV E2 restrains E6 and E7 gene transcription, which aids the regulation of cellular proliferation (28). Cleavage of the E2 gene increased HPV E6 and E7 gene expression, which disrupts the cell cycle and leads to aberrant cellular proliferation (2931). The HPV E6 and E7 genes usually integrate into the host cell genome and require longer incubation periods for the viral DNA replication and recombination to produce a variety of genetic changes in the viral and human genome (32,33). The expression levels of E6 and E7 simultaneously increase, which results in human chromosomal instability and the development of malignant tumors (34).

The high prevalence of HPV18 infection suggested that HPV18 infection is a pathogenic factor for esophageal carcinoma progression. The integration of HPV18 DNA into the host cell genome suggests that persistent HPV infection has a function in esophageal epithelial cell malignant transformation and carcinogenesis.

Acknowledgements

The present study was supported by the Project of Science and Technology for Overseas Scholars in Hebei Province (grant no. C201400559), the Project of North China University Science and Technology (grant no. SP201506), the Hebei Education Department (grant no. ZD2016003), and Beijing Natural Science Foundation (grant no. 5162003).

Competing interests

The authors declare that they have no competing interests.

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Spandidos Publications style
Li S, Liu Z, Yan J, Sun S, Hou X, Liu D, Zhang K and Li JT: Integration sites of human papillomavirus 18 in esophageal cancer samples. Oncol Lett 15: 7438-7442, 2018
APA
Li, S., Liu, Z., Yan, J., Sun, S., Hou, X., Liu, D. ... Li, J. (2018). Integration sites of human papillomavirus 18 in esophageal cancer samples. Oncology Letters, 15, 7438-7442. https://doi.org/10.3892/ol.2018.8191
MLA
Li, S., Liu, Z., Yan, J., Sun, S., Hou, X., Liu, D., Zhang, K., Li, J."Integration sites of human papillomavirus 18 in esophageal cancer samples". Oncology Letters 15.5 (2018): 7438-7442.
Chicago
Li, S., Liu, Z., Yan, J., Sun, S., Hou, X., Liu, D., Zhang, K., Li, J."Integration sites of human papillomavirus 18 in esophageal cancer samples". Oncology Letters 15, no. 5 (2018): 7438-7442. https://doi.org/10.3892/ol.2018.8191