Genetic predictions of life expectancy in southern Thai patients with β0‑thalassemia/Hb E
- Authors:
- Published online on: May 6, 2022 https://doi.org/10.3892/br.2022.1535
- Article Number: 52
-
Copyright: © Nuinoon et al. This is an open access article distributed under the terms of Creative Commons Attribution License.
Abstract
Introduction
β-Thalassemia and hemoglobin E (Hb E), two globin gene defects characterized by β-globin gene mutations, lead to reduced (β+), absent (β0), or abnormal (βE) β-globin chain synthesis. In Thailand, β-thalassemia and Hb E are very common, with frequencies varying from 3-9 and 10-60%, respectively (1,2). In Southeast Asia, particularly in Thailand, β-thalassemia/Hb E and homozygous β-thalassemia are common β-thalassemia diseases (3). Phenotypic variations in disease severity have been observed in β-thalassemia disease ranging from mild to severe clinical phenotypes (4-6). Clinical presentation of severe cases (β-thalassemia major-like phenotype) occurs between 6 and 24 months (7). Genetic factors affecting unbalanced globin chain synthesis in β-thalassemia disease are primary and secondary genetic modifiers of disease severity such as the type of β-thalassemia mutation (primary modifier) and coinheritance of α-thalassemia and polymorphisms associated with Hb F levels (secondary modifiers) (8-10).
The type of β-thalassemia mutation represents β+ or β0. In Thailand, in addition to Hb E, the three most common β-thalassemia mutations reported are as follows: Codons 41/42 (-TTCT), codon 17 (A>T) and IVS II-654 (C>T) (3,10). In the southern Thai population, IVS I-5 (G>C), codon 19 (A>G), and Hb Malay were also common after codons 41/42 (-TTCT), which are the most common in all regions of Thailand (11-14). Additionally, genetic variations at three major loci (HBB cluster, HBS1L-MYB, and BCL11A) have been associated with fetal hemoglobin levels and disease phenotypes in β-thalassemia disease (15-17). In Thailand, several SNPs located in the HBB cluster, HBS1L-MYB, and BCL11A have been identified by two genome-wide association studies with different platforms (17,18). Several informative SNPs for predicting disease severity in Thai and Malaysian β0-thalassemia/Hb E patients have recently been developed (19). In Thailand, the average life expectancy in β-thalassemia/Hb E patients is ~30 years (20,21). Several genetic and environmental factors as well as the treatment and management of each patient have been associated with life expectancy. Cardiovascular complications are a common cause of death in β-thalassemia major due to iron overload (21,22). According to the current management of patients with safe blood transfusion and iron chelation, the life expectancy in thalassemia major was comparable with that in thalassemia intermedia (23). Therefore, proper management could be considered at the age of presentation (age at onset) of each patient to extend the life expectancy of severe cases. This study aimed to determine the updated spectrum of β-thalassemia mutations to predict the contribution of genetic modifiers to disease severity, age at onset, and predicted life expectancy in southern Thai β-thalassemia patients.
Materials and methods
Ethical statement
Ethical clearance of the study protocol was obtained from the Institutional Review Board of Walailak University (Nakhon Si Thammarat, Thailand; approval no. 12/030). Written informed consent was obtained from all patients/guardians. All experiments were performed in accordance with relevant guidelines and regulations.
Study population
A cross-sectional study was conducted on β-thalassemia patients enrolled from thalassemia clinics, pediatric departments (child patients), and internal medicine departments (adult patients) from 6 different provinces between July 2012 and August 2014. All patients were diagnosed with β-thalassemia/Hb E (Hb types of EF or EFA) or homozygous β-thalassemia (Hb types of A2F or A2FA) based on the clinical manifestations, a complete blood count, and hemoglobin analysis. DNA analyses were then performed for confirmation of β-thalassemia/Hb E and homozygous β-thalassemia. Disease severity was classified using a scoring system according to 6 independent parameters as follows: the hemoglobin level at steady state, the age at first blood transfusion, a requirement for blood transfusion, the spleen size (or splenectomy status), the age at disease presentation and growth development (24).
Hematological analysis
A complete blood count was performed using the Sysmex XN-1000 automated hematology analyzer (Sysmex Corporation). Hemoglobin analysis was performed using an automated high-performance liquid chromatography (HPLC-Variant II β-thalassemia short program, Bio-Rad Laboratories, Inc.).
DNA extraction and measurement of the concentration and purity of the extracted genomic DNA
Genomic DNA was extracted from peripheral blood leukocytes using the Genomic DNA Extraction Kit (Geneaid) according to the manufacturer's instructions. The concentration and purity of gDNA were measured at wavelengths of 260 and 280 nm using a Nanodrop ND-1000 spectrophotometer (NanoDrop Technologies; Thermo Fisher Scientific, Inc.).
Characterization of globin gene mutations
β-Thalassemia mutations were characterized using polymerase chain reaction (PCR)-based methods. Common β-globin gene mutations were first identified by PCR-reverse dot blot hybridization (PCR-RDB) (25), all probe sequences are listed in Table SI. or a multiplex amplification refractory mutation system (MARMS) (26) followed by multiplex gap-PCR (deletion type) (14). The Hb E allele was confirmed by real-time PCR-high resolution melting (HRM) analysis as described previously (27). Mutational characterization of DNA samples with negative results from PCR-RDB or MARMS-PCR and other PCR-based methods were further identified by automated DNA sequencing (Solgent Co., Ltd) of the whole HBB gene as described previously (28), the additional forward and reverse primer sequences were 5'-CGGCTGTCATCACTTAGACC-3' and 5'-GCAGCTTGTCACAGTGCAG-3', respectively (product size, 598 bp). Common α-globin gene deletions, including α-thalassemia 1 alleles (--SEA and --THAI) and α-thalassemia 2 alleles (-α3.7 and -α4.2), were characterized by multiplex gap-PCR whereas Hb constant spring and Hb Pakse alleles were identified by allele-specific PCR as described in previous studies (29,30). All primer sequences are shown in Table SII.
Single nucleotide polymorphism (SNP) genotyping
Four SNPs [rs7482144 (XmnI), rs2071348 (HBBP1) rs766432 and rs9376074] from three representative regions (HBB cluster, BCL11A and HBS1L) were selected for genotyping. PCR-restriction fragment length polymorphism (RFLP) was used to characterize the genotypes of rs7482144, rs2071348 and rs766432 as described previously and the primer sequences for SNP genotyping were as follows: rs7482144 forward primer, 5'-GGCCTAAAACCACAGAGAGT-3' and reverse primer, 5'-CCAGAAGCGAGTGTGTGGAA-3'; rs2071348 forward primer, 5'-GGCACCTTTGCTACACTGAG-3' and reverse primer, 5'-TCATCATTCGGAGGGAAACA-3', and rs766432 forward primer, 5'-AAAATCTCAGAATACAAAGGGC-3' and reverse primer, 5'-GTTAGGGAAGGGGATTGAC-3' (27,31,32). Additionally, SNP genotyping of rs9376074 was performed using PCR-HRM and the primer sequences were: Forward, 5'-GAAGATGAAGCTAAGGTTTGG-3' and reverse, 5'-TCTGACTCCTCAAATGCC-3' (27).
Statistical analysis
Descriptive statistics were used to describe the spectrum of β-globin gene mutations, disease severity score/grouping, and hematological parameters of the patients. Clinical and hematological data from different severities of patients were compared using a χ2 test for categorical variables and the Kruskal-Wallis test for continuous variables (non-normally distributed data) between the mild, moderate and severe groups using SPSS (version 26.0. IBM Corp.). Single SNP association analyses for disease severity, age at onset, and predicted life expectancy were performed in the recessive and allelic models using a Pearson's χ2 test and/or Fisher's exact test. The P-value, odds ratios (OR), and 95% conference intervals (CIs) were calculated to compare genotype and allele frequencies using 2x2 contingency tables in publicly accessible statistical software (http://vassarstats.net/odds2x2.html). P<0.05 was considered to indicate a statistically significant difference. The clustered bar and the 100% stacked column were constructed using Infogram (https://infogram.com/) and Microsoft Excel, respectively.
Results
Patient classification according to α- and β-globin genotypes and disease phenotypes
A total of 181 β-thalassemia patients were enrolled and classified according to their β-globin genotypes, including 24 homozygous β-thalassemia and 157 β-thalassemia/Hb E patients. Clinical data, physical examination, complete blood count, and hemoglobin analysis were used for evaluating disease phenotypes. In addition, α-thalassemia interactions were found in 4 homozygous β-thalassemia and 9 β-thalassemia/Hb E patients. A total of 135 β0-thalassemia/Hb E without α-thalassemia interactions were divided into 3 categories according to their predicted life expectancy, disease severity, and the age of onset. According to an average life expectancy of β0-thalassemia/Hb E patients (30 years of age), the 135 β0-thalassemia/Hb E patients were divided into two groups according to age: ≤30 (33 patients from severe cases who were predicted to have a lower life expectancy) and >30 (33 patients from all cases who were predicted to have a higher life expectancy). The second category was grouped according to disease severity, including 18 mild cases, 76 moderate cases, and 41 severe cases. The third category was grouped according to age at onset, including 61 cases with an age at onset ≤2 years old and 74 cases with an age at onset >2 years old (a threshold of 2 years of age was selected as this is the cutoff point between thalassemia major and thalassemia intermedia), as shown in Fig. 1.
Disease severity and primary and secondary genetic modifiers in southern Thai β-thalassemia patients
The 181 patients with β-thalassemia were classified as 34 mild cases, 95 moderate cases, and 52 severe cases and further subdivided into 6 groups according to the β-globin genotypes (Table I). Among the 181 patients with β-thalassemia, β0-thalassemia/Hb E accounted for 78% and was grouped into 21 mild cases, 80 moderate cases, and 41 severe cases. All β-thalassemia patients with β+/β+ and β+/βE genotypes were grouped as the mild disease phenotype and demonstrated that the primary modifier, the type of β-globin mutation, can predict disease severity. Additionally, the effect of the secondary genetic modifier, α-thalassemia interaction, was demonstrated as β-thalassemia patients who carry α-thalassemia 2 (-α3.7/αα); 50% had mildly affected and 50% had moderately affected phenotypes. Moreover, one patient with β-thalassemia who carried Hb CS heterozygote had a mildly affected phenotype. In contrast, homozygous β0-thalassemia patients were mostly scored as a severely affected phenotype. A homozygous β0-thalassemia patient coinheritance with α-thalassemia 2 heterozygote had a mildly affected phenotype. Rarely did a patient with compound heterozygosity for IVSII-837, T>G (unclear β+ or β0), and Hb E have a moderate disease phenotype. Among 14 patients (8%), only one β-thalassemia mutation could be identified leaving 14 uncharacterized β-thalassemia alleles.
Table IPrimary (β-thalassemia mutations) and secondary modifiers (α-thalassemia mutations) of disease severity in the southern Thai β-thalassemia cohort. |
Clinical and hematological characteristics of southern Thai β0-thalassemia/Hb E patients in different age groups
Several patient characteristics were significantly different between the 2 age groups (≤30 years old and >30 years old), such as age, age at presentation, age at first blood transfusion, frequency of blood transfusion, spleen status, and growth development (P<0.05). Approximately 97% of the ≤30-year-old group required regular blood transfusion. A greater number of splenectomized patients was highly observed in the ≤30-year age group. According to the standard Thai growth chart, the >30-year-old group was found mostly (>73%) in the 10th-25th percentile, whereas in the ≤30 years age group it was mostly observed (>67%) in the 3rd-10th percentile (Table II). Obvious differences in all clinical and hematological findings between the 3 disease severity groups were observed (Table SIII).
Table IIBaseline, clinical, and hematological profiles of 66 southern Thai β0-thalassemia/Hb E patients without α-thalassemia interactions categorized by age groups. |
An updated β-thalassemia mutational spectrum in southern Thai β-thalassemia patients
In the present study, 181 patients with β-thalassemia including, 24 with homozygous β-thalassemia and 157 with β-thalassemia/Hb E disease, were recruited. In total, 362 β-globin alleles from 181 β-thalassemia patients and 16 different mutations were identified, among which 3 common mutations accounted for 61.4% (Hb E was not included) as follows: Codons 41/42, -TTCT; IVS I-5, G>C and codon 17, A>T with frequencies of 23.9, 23.4, and 14.1%, respectively. All 3 of the most common mutations were categorized as β0 (codons 41/42, -TTCT and codon 17, A>T) or the severe form of β+ (IVS I-5, G>C). A total of 14 alleles of the β-globin gene, from 14 β-thalassemia patients were not successfully characterized in either allele of the β-globin gene, and these patients were grouped as having uncharacterized β-globin gene mutations (Fig. 2).
Associations between SNPs and disease severity and age at onset
The associations between the 4 SNPs and the disease severity of β0-thalassemia/Hb E patients using mild and severe disease severity groups. The XmnI polymorphism showed a strong association with the disease severity (P=0.004; OR, 3.20; 95% CI, 1.42-7.22) (Table SIV). To predict the age at onset of southern Thai β0-thalassemia/Hb E patients according to the SNP genotypes from 3 independent regions, the CC genotype of XmnI (rs7482144) was a strong predictor and showed a significantly increased risk for younger age at onset (P=0.004; OR, 3.13; 95% CI, 1.40-7.00). In contrast, there was no association in BCL11A (rs766432) and HBS1L-MYB (rs9376074) regions (Table SV). Among the 3 genotypes of XmnI, the mean and standard deviation of age at onset (2.5±3.19, 6.6±9.39, and 20.6±24.59 years) were increased according to the number of T alleles (CC, CT, and TT, respectively). In addition, the comparisons of the mean age at onset from each genotype were significant (P<0.05) (Fig. 3A). To apply the XmnI genotypes for predicting the age at onset, the TT genotype was observed in >90% of individuals in the >2 years of age group, and the CC genotype was observed in >60% of the individuals in the ≤2 years of age group. The frequency of the TT genotype in the >2 years of age group was higher than that in the ≤2 years of age group (P=0.0006; OR, 21.08; 95% CI, 2.42-183.34) (Fig. 3B).
Associations between SNPs and the predicted life expectancy
The associations between the 4 candidate SNPs from 3 independent regions and the predicted life expectancy of β0-thalassemia/Hb E patients were next assessed. The XmnI (rs7482144) polymorphism showed a strong association with the predicted life expectancy (P=0.004; OR, 6.50; 95% CI, 1.64-25.80). The CT or TT genotype of XmnI was associated with a higher predicted lifespan than those with the CC genotype. In addition, rs2071348 also exhibited an association with the predicted life expectancy (P=0.016). In contrast, rs766432 and rs9376074 demonstrated no association with the predicted life expectancy (P=0.458 and 0.438, respectively) (Table III).
Table IIIAssociation of the 4 SNPs in 3 independent regions with the predicted life expectancy in southern Thai β0-thalassemia/Hb E patients without α-thalassemia interactions. |
Cascade genetic testing of β0-thalassemia/Hb E patients for phenotype predictions
According to the overall results, the age at onset, predicted life expectancy, and disease severity were assigned as phenotypic variations in β-thalassemia patients. Phenotypic variations were then classified into 2 groups: Low or high predicted life expectancy. The genotyping of β-thalassemia mutations, α-thalassemia interactions, and XmnI genotypes were sequentially recommended for phenotype prediction; for example, the CT or TT genotype of XmnI was observed in 90.9% of β0-thalassemia/Hb E patients with high predicted life expectancy (Fig. 4).
Discussion
β-thalassemia and Hb E are very common in Thailand, in which the frequency of the β-thalassemia trait varies from 3 to 9%, and the frequency of Hb E is 13% on average and varies from region to region. The frequency of Hb E is very high at the junction of Thailand, Laos, and Cambodia at 50-60% (33). In Thailand, the number of patients with compound heterozygotes for β-thalassemia and Hb E is higher than that for homozygous β-thalassemia because the frequency of Hb E is much higher than that for β-thalassemia (3,20,34). β-thalassemia/Hb E disease showed diverse disease phenotypes ranging from mild to severely affected patients (6,21). The variation in disease severity in β-thalassemia patients could be explained by β-thalassemia mutations (10), α-thalassemia interactions (35,36), and genetic determinants of Hb F production (15,17,18,37,38), and other factors related to the pathophysiology of β-thalassemia (39-41). Several genetic modifiers associated with disease severity and fetal hemoglobin levels in β-thalassemia/Hb E patients have been well studied in the Thai population (10,17,18). Factors affecting life expectancy in β-thalassemia patients were a subset of disease severity-associated genetic factors and proper treatments such as safe blood transfusion, iron chelation, and other supportive therapies can decrease disease complications. However, there is no report of SNP frequency data and some rare β-thalassemia mutations in southern Thai β0-thalassemia/Hb E patients. According to different genetic backgrounds and migration, the mutational spectrum of β-thalassemia and SNP frequency in southern Thai differed in other parts of Thailand. This phenomenon has also been observed in various countries such as India (42-44), Malaysia, China (45,46), and other countries (47). Therefore, the predictive performance of the β-thalassemia mutations and SNPs would differ in each region in the same country.
According to the primary modifier, the present study demonstrated that all β+/β+ and β+/βE patients were scored as mildly affected due to the primary modifier (10,17). The frequency of disease severity among β0/βE southern Thai patients with mild, moderate, and severe disease phenotypes was distributed in a different pattern than in previous studies because of the different genetic backgrounds (17,24) of the studied patients. This study revealed that the β-thalassemia mutations are very heterogeneous, with a wider distribution in southern Thailand than in other parts of Thailand. The 3 most common β-thalassemia mutations in this study were 61.4%, which differed from the central (72.4%), northern (83.1%), and northeastern (80.3%) regions of Thailand (12). A total of 17 β-thalassemia mutations, including Hb E, were identified in 181 southern Thai β-thalassemia patients in the present study. Comparing these results to previously published reports in the southern Thai population, the 4 most common mutations, codons 41/42 (-TTCT), IVS I-5 (G>C), codon 17 (A>T), and codon 19 (A>G) accounted for 67.7% of mutations in the present study and revealed slightly different patterns and frequencies due to the differences in the collected sample backgrounds, such as ethnicity (11), thalassemia status (trait or disease) (48), different provinces (12-14) of southern Thailand and migration (47) (Fig. S1). Although this study recruited patients from several provinces of southern Thailand, a similar pattern of the most common β-thalassemia mutations was observed. The origin of patients may explain the difference in distribution; for example, codons 41/42 (-TTCT) are very common in individuals of Chinese origin (45,46), whereas IVS I-5 (G>C) is very common in the Malay (49) and Asian Indian (50) populations. Interestingly, the present study demonstrated comparable frequencies of codons 41/42; -TTCT (23.9%) and IVS I-5; G>C (23.4%) because of the higher sample size of Thai-Muslim patients. The spectrum and frequency of β-thalassemia mutations in the southern Thai population were different from those in other regions of Thailand (3,51). Hb Malay was found at the highest frequency (11.7%) in the southern region of Thailand compared with other parts of Thailand (12,13). The frequency of Hb Malay in our study was 6.3%, ranking as the fourth most common β-thalassemia mutation in southern Thailand. Heterozygous β-thalassemia (IVS II-837; T>G) was first described in Asian Indians with unclear β+ or β0 thalassemia showing a typical asymptomatic carrier, and the incidence of this mutation was found in the Gaud Saraswat (44), Brahmins in Goa, and Karnataka (52) states of southern India. Phenotypes of the homozygous state of IVS II-837 (T>G) were transfusion-dependent (52). Interestingly, compound heterozygotes of IVS II-837 (T>G) and Hb E were found for the first time in the present study and showed a moderately affected phenotype with regular blood transfusion. According to the disease phenotype from this study and previous reports, IVS II-837 (T>G) could be categorized as β+-thalassemia (severe form) (44,52).
Coinheritance of α-thalassemia in β-thalassemia patients is one of the ameliorating factors due to more balanced globin chain synthesis (35,36). Heterozygous α-thalassemia 2 and Hb CS were found only in 7 mild and 6 moderate cases in the present study. The α-thalassemia 1 allele was not detected in our β-thalassemia patients. A possible reason is that the coinheritance of α-thalassemia 1 leads to mild β-thalassemia; thus, these patients were not found in a hospital-based sample collection (35). Furthermore, several genetic markers in the HBB cluster (10,15,17,51), BCL11A (15,17,19), and HBS1L-MYB (15,17) have been associated with fetal hemoglobin and disease severity in several populations. In addition, mutations in human Krüppel-like factor 1 (KLF1) were found to be associated with increased fetal hemoglobin (Hb F) and hemoglobin A2 (Hb A2) (53,54). KLF1 mutations have been studied in patients with β-thalassemia/Hb E, and a higher Hb F level was observed in the cases with KLF1 mutations (38,51).
According to hospital-based sample collection, the present study failed to enroll sufficient mild cases (n=18) for SNP analysis in disease severity because the mild case has a lower frequency of going to the hospital. However, XmnI and rs2071348 were associated with disease severity in β0-thalassemia/Hb E (with low power). The T allele frequency of XmnI in mild cases (0.611) was significantly higher than that in severe cases (0.329). No associations were found in rs766432 and rs9376074 because of the low sample size in mild cases (Table SIV). An increased sample size could improve the statistical power in all SNPs due to the similar trend of the allele frequencies (17).
Currently, the life expectancy between thalassemia major and thalassemia intermedia is comparable due to the use of safe blood transfusions, effective iron chelation, and improved management of cardiovascular complications (23,55). Proper patient management should be initiated during the age at onset for improved quality of life and increased life expectancy. Therefore, the prediction of the age at onset is important not only for patient management in newborns but also for genetic counseling in prenatal diagnosis (PND). Our study showed the association between SNPs and the age at onset and the predicted life expectancy of southern Thai β0-thalassemia/Hb E patients. Interestingly, the XmnI polymorphism and rs2071348 were associated with the age at onset and the predicted life expectancy. The XmnI polymorphism is the strongest marker for predicting the age at onset and the predicted life expectancy in southern Thai patients with β0-thalassemia/Hb E. This polymorphism is well identified in association with fetal hemoglobin levels and disease phenotypes in different groups of populations (10,15,17-19,51). Due to the improved and individualized management of the patients, an improved life expectancy and quality of life were observed in β-thalassemia patients. In addition, the life expectancy of thalassemia major patients was similar to that of thalassemia intermedia patients (23,55,56). Therefore, the genetic prediction of age at onset and life expectancy is suggested for better patient management after newborn screening. Concerning precision medicine, the β-thalassemia mutations and XmnI (rs7482144) polymorphism could be simultaneously genotyped to improve genetic counseling in PND. However, this suggested guideline should be validated on a national scale and with considerably larger sample sizes in the future.
In summary, genetic heterogeneity and a broad spectrum of β-globin gene mutations were observed in southern Thai β-thalassemia patients. This study provides an updated spectrum of β-thalassemia mutations. Hb Malay, IVS I-5 (G>C), 105-bp deletion, and 3.5-kb deletion were primarily found in the southern Thai population, accounting for 34.1% of all mutations. The type of β-globin gene mutation and co-inheritance of α-thalassemia are strong predictors of disease severity. The XmnI polymorphism and rs2071348 were associated with the age at onset and predicted life expectancy. However, SNPs on BCL11A and intergenic HBS1L-MYB are required to confirm the genetic association in a larger sample size. This study demonstrates that the XmnI polymorphism is the best genetic predictor for age at onset and life expectancy. Therefore, genetic prediction for age at onset and life expectancy may be beneficial and practical during PND or newborn screening for better genetic counseling and optimal management.
Supplementary Material
Comparison of the frequencies (%) of β-thalassemia mutations in southern Thailand.
List of amino-linked oligonucleotide probes for PCR-reverse dot blot hybridization with common and rare β-thalassemia mutations (25).
List of primer sequences of PCR-RDB, MARMS-PCR, multiplex-gap PCR, PCR-HRM, and DNA sequencing.
Clinical and hematological findings of the 135 southern Thai β0-thalassemia/Hb E patients without α-thalassemia interactions.
Association of 4 SNPs in 3 independent regions with disease severity in southern Thai β0-thalassemia/Hb E patients without α-thalassemia interactions.
Association of 4 SNPs in 3 independent regions with the age at onset in 135 southern Thai β0-thalassemia/Hb E patients without α-thalassemia interactions.
Acknowledgements
We would like to thank Mrs. Dararat Horpet for the technical support and all of the patients who participated in this research project.
Funding
Funding: This study was funded by a grant from the Thailand Research Fund (grant no. MRG5580069).
Availability of data and materials
The datasets used and/or analyzed during the present study are available from the corresponding author on reasonable request.
Authors' contributions
MN designed and performed the experiments, analyzed the data, and wrote the manuscript. PR performed PCR-HRM. TB, AC, KS, NS, KL, and OT provided clinical data and performed the physical examination and helped in obtaining blood specimens. SS and SF provided DNA controls and helped to design the experiments. All authors have read and approved the final manuscript. MN, TB, AC, KS, NS, KL, and OT confirm the authenticity of all the raw data.
Ethics approval and consent to participate
The study was conducted according to the Declaration of Helsinki guidelines and approved by the Human Research Ethics Committee of Walailak University (Nakhon Si Thammarat, Thailand; approval no. 12/030).
Patient consent for publication
Not applicable.
Competing interests
The authors declare that they have no competing interests.
References
Fucharoen S, Winichagoon P, Siritanaratkul N, Chowthaworn J and Pootrakul P: α- and β-thalassemia in Thailand. Ann N Y Acad Sci. 850:412–414. 1998.PubMed/NCBI View Article : Google Scholar | |
Fucharoen S and Winichagoon P: Hemoglobinopathies in Southeast Asia: Molecular biology and clinical medicine. Hemoglobin. 21:299–319. 1997.PubMed/NCBI View Article : Google Scholar | |
Thein SL, Winichagoon P, Hesketh C, Best S, Fucharoen S, Wasi P and Weatherall DJ: The molecular basis of β-thalassemia in Thailand: Application to prenatal diagnosis. Am J Hum Genet. 47:369–375. 1990.PubMed/NCBI | |
Winichagoon P, Thonglairoam V, Fucharoen S, Wilairat P, Fukumaki Y and Wasi P: Severity differences in β-thalassaemia/haemoglobin E syndromes: Implication of genetic factors. Br J Haematol. 83:633–639. 1993.PubMed/NCBI View Article : Google Scholar | |
Fucharoen S, Winichagoon P, Pootrakul P, Piankijagum A and Wasi P: Variable severity of Southeast Asian β0-thalassemia/Hb E disease. Birth Defects Orig Artic Ser. 23:241–248. 1987.PubMed/NCBI | |
Fucharoen S, Ketvichit P, Pootrakul P, Siritanaratkul N, Piankijagum A and Wasi P: Clinical manifestation of β-thalassemia/hemoglobin E disease. J Pediatr Hematol Oncol. 22:552–557. 2000.PubMed/NCBI View Article : Google Scholar | |
Galanello R and Origa R: β-thalassemia. Orphanet J Rare Dis. 5(11)2010.PubMed/NCBI View Article : Google Scholar | |
Nuntakarn L, Fucharoen S, Fucharoen G, Sanchaisuriya K, Jetsrisuparb A and Wiangnon S: Molecular, hematological and clinical aspects of thalassemia major and thalassemia intermedia associated with Hb E-β-thalassemia in Northeast Thailand. Blood Cells Mol Dis. 42:32–35. 2009.PubMed/NCBI View Article : Google Scholar | |
Yamsri S, Singha K, Prajantasen T, Taweenan W, Fucharoen G, Sanchaisuriya K and Fucharoen S: A large cohort of β(+)-thalassemia in Thailand: Molecular, hematological and diagnostic considerations. Blood Cells Mol Dis. 54:164–169. 2015.PubMed/NCBI View Article : Google Scholar | |
Winichagoon P, Fucharoen S, Chen P and Wasi P: Genetic factors affecting clinical severity in β-thalassemia syndromes. J Pediatr Hematol Oncol. 22:573–580. 2000.PubMed/NCBI View Article : Google Scholar | |
Laosombat V, Nopparatana C, Wongchanchailert M and Wiriyasateinkul A: Molecular basis of β-thalassemia in Thai Muslim patients in the the south of Thailand. Southeast Asian J Trop Med Public Health. 28 (Suppl 3):S104–S105. 1997.PubMed/NCBI | |
Laosombat V, Fucharoen SP, Panich V, Fucharoen G, Wongchanchailert M, Sriroongrueng W, Nopparatana C, Kenpitak K, Maipang M and Fukumaki Y: Molecular basis of β-thalassemia in the South of Thailand. Am J Hematol. 41:194–198. 1992.PubMed/NCBI View Article : Google Scholar | |
Laosombat V, Wongchanchailert M, Sattayesevana B and Nopparatana C: Clinical, hematological and molecular features in Thais with β-Malay/β-thalassemia and β-Malay/HbE. Southeast Asian J Trop Med Public Health. 28 (Suppl 3):S106–S109. 1997.PubMed/NCBI | |
Nopparatana C, Panich V, Saechan V, Sriroongrueng V, Nopparatana C, Rungjeadpha J, Pornpatkul M, Laosombat V and Fukumaki Y: The spectrum of β-thalassemia mutations in Southern Thailand. Southeast Asian J Trop Med Public Health. 26 (Suppl 1):S229–S234. 1995.PubMed/NCBI | |
Lettre G, Sankaran VG, Bezerra MA, Araújo AS, Uda M, Sanna S, Cao A, Schlessinger D, Costa FF, Hirschhorn JN and Orkin SH: DNA polymorphisms at the BCL11A, HBS1L-MYB, and β-globin loci associate with fetal hemoglobin levels and pain crises in sickle cell disease. Proc Natl Acad Sci USA. 105:11869–11874. 2008.PubMed/NCBI View Article : Google Scholar | |
Ma Q, Abel K, Sripichai O, Whitacre J, Angkachatchai V, Makarasara W, Winichagoon P, Fucharoen S, Braun A and Farrer LA: β-globin gene cluster polymorphisms are strongly associated with severity of HbE/β(0)-thalassemia. Clin Genet. 72:497–505. 2007.PubMed/NCBI View Article : Google Scholar | |
Nuinoon M, Makarasara W, Mushiroda T, Setianingsih I, Wahidiyat PA, Sripichai O, Kumasaka N, Takahashi A, Svasti S, Munkongdee T, et al: A genome-wide association identified the common genetic variants influence disease severity in β0-thalassemia/hemoglobin E. Hum Genet. 127:303–314. 2010.PubMed/NCBI View Article : Google Scholar | |
Sherva R, Sripichai O, Abel K, Ma Q, Whitacre J, Angkachatchai V, Makarasara W, Winichagoon P, Svasti S, Fucharoen S, et al: Genetic modifiers of Hb E/β0-thalassemia identified by a two-stage genome-wide association study. BMC Med Genet. 11(51)2010.PubMed/NCBI View Article : Google Scholar | |
Munkongdee T, Tongsima S, Ngamphiw C, Wangkumhang P, Peerapittayamongkol C, Hashim HB, Fucharoen S and Svasti S: Predictive SNPs for β0-thalassemia/HbE disease severity. Sci Rep. 11(10352)2021.PubMed/NCBI View Article : Google Scholar | |
Fucharoen S and Weatherall DJ: The hemoglobin E thalassemias. Cold Spring Harb Perspect Med. 2(a011734)2012.PubMed/NCBI View Article : Google Scholar | |
Fucharoen S and Winichagoon P: Clinical and hematologic aspects of hemoglobin E β-thalassemia. Curr Opin Hematol. 7:106–112. 2000.PubMed/NCBI View Article : Google Scholar | |
Cunningham MJ, Macklin EA, Neufeld EJ and Cohen AR: Thalassemia Clinical Research Network. Complications of β-thalassemia major in North America. Blood. 104:34–39. 2004.PubMed/NCBI View Article : Google Scholar | |
Vitrano A, Calvaruso G, Lai E, Colletta G, Quota A, Gerardi C, Concetta Rigoli L, Pitrolo L, Cuccia L, Gagliardotto F, et al: The era of comparable life expectancy between τhalassaemia major and intermedia: Is it time to revisit the major-intermedia dichotomy? Br J Haematol. 176:124–130. 2017.PubMed/NCBI View Article : Google Scholar | |
Sripichai O, Makarasara W, Munkongdee T, Kumkhaek C, Nuchprayoon I, Chuansumrit A, Chuncharunee S, Chantrakoon N, Boonmongkol P, Winichagoon P and Fucharoen S: A scoring system for the classification of β-thalassemia/Hb E disease severity. Am J Hematol. 83:482–484. 2008.PubMed/NCBI View Article : Google Scholar | |
Winichagoon P, Saechan V, Sripanich R, Nopparatana C, Kanokpongsakdi S, Maggio A and Fucharoen S: Prenatal diagnosis of β-thalassaemia by reverse dot-blot hybridization. Prenat Diagn. 19:428–435. 1999.PubMed/NCBI | |
Mirasena S, Shimbhu D, Sanguansermsri M and Sanguansermsri T: Detection of β-thalassemia mutations using a multiplex amplification refractory mutation system assay. Hemoglobin. 32:403–409. 2008.PubMed/NCBI View Article : Google Scholar | |
Kesornsit A, Jeenduang N, Horpet D, Plyduang T and Nuinoon M: Quantitative trait loci influencing Hb F Levels in Southern Thai Hb E (HBB: c.79G>A) Heterozygotes. Hemoglobin. 42:23–29. 2018.PubMed/NCBI View Article : Google Scholar | |
Nuinoon M, Jeenduang N, Kesornsit A, Horpet D and Plyduang T: Hematological and molecular characterization of a novel Hb A2 variant with homozygous α-thalassemia-2 in a Southern Thai Individual. Hemoglobin. 41:213–215. 2017.PubMed/NCBI View Article : Google Scholar | |
Chong SS, Boehm CD, Higgs DR and Cutting GR: Single-tube multiplex-PCR screen for common deletional determinants of α-thalassemia. Blood. 95:360–362. 2000.PubMed/NCBI | |
Fucharoen S, Sanchaisuriya K, Fucharoen G, Panyasai S, Devenish R and Luy L: Interaction of hemoglobin E and several forms of α-thalassemia in Cambodian families. Haematologica. 88:1092–1098. 2003.PubMed/NCBI | |
Fucharoen S, Shimizu K and Fukumaki Y: A novel C-T transition within the distal CCAAT motif of the Gγ-globin gene in the Japanese HPFH: Implication of factor binding in elevated fetal globin expression. Nucleic Acids Res. 18:5245–5253. 1990.PubMed/NCBI View Article : Google Scholar | |
Roy P, Bhattacharya G, Mandal A, Dasgupta UB, Banerjee D, Chandra S and Das M: Influence of BCL11A, HBS1L-MYB, HBBP1 single nucleotide polymorphisms and the HBG2 XmnI polymorphism On Hb F levels. Hemoglobin. 36:592–599. 2012.PubMed/NCBI View Article : Google Scholar | |
Fucharoen S and Winichagoon P: Haemoglobinopathies in Southeast Asia. Indian J Med Res. 134:498–506. 2011.PubMed/NCBI | |
Yamsri S, Sanchaisuriya K, Fucharoen G, Sae-Ung N, Ratanasiri T and Fucharoen S: Prevention of severe thalassemia in Northeast Thailand: 16 years of experience at a single university center. Prenat Diagn. 30:540–546. 2010.PubMed/NCBI View Article : Google Scholar | |
Winichagoon P, Fucharoen S, Weatherall D and Wasi P: Concomitant inheritance of α-thalassemia in β0-thalassemia/Hb E disease. Am J Hematol. 20:217–222. 1985.PubMed/NCBI View Article : Google Scholar | |
Sripichai O, Munkongdee T, Kumkhaek C, Svasti S, Winichagoon P and Fucharoen S: Coinheritance of the different copy numbers of α-globin gene modifies severity of β-thalassemia/Hb E disease. Ann Hematol. 87:375–379. 2008.PubMed/NCBI View Article : Google Scholar | |
Jomoui W, Tepakhan W, Yamsri S, Srivorakun H, Fucharoen G and Fucharoen S: A novel SNP rs11759328 on Rho GTPase-activating protein 18 gene is associated with the expression of Hb F in hemoglobin E-related disorders. Ann Hematol. 99:23–29. 2020.PubMed/NCBI View Article : Google Scholar | |
Khamphikham P, Sripichai O, Munkongdee T, Fucharoen S, Tongsima S and Smith DR: Genetic variation of Krüppel-like factor 1 (KLF1) and fetal hemoglobin (HbF) levels in β0-thalassemia/HbE disease. Int J Hematol. 107:297–310. 2018.PubMed/NCBI View Article : Google Scholar | |
Azman NF, Abdullah WZ, Hanafi S, Diana R, Bahar R, Johan MF, Zilfalil BA and Hassan R: Genetic polymorphisms of HbE/β-thalassemia related to clinical presentation: Implications for clinical diversity. Ann Hematol. 99:729–735. 2020.PubMed/NCBI View Article : Google Scholar | |
Zarghamian P, Azarkeivan A, Arabkhazaeli A, Mardani A and Shahabi M: Hepcidin gene polymorphisms and iron overload in β-thalassemia major patients refractory to iron chelating therapy. BMC Med Genet. 21(75)2020.PubMed/NCBI View Article : Google Scholar | |
Torres FF, Bernardo VS, Silva DGH, Okumura JV and Bonini-Domingos CR: Association of FOXO3 polymorphism (rs3800231) and clinical subphenotypes of β-thalassemic individuals. Hematol Transfus Cell Ther: Nov 22, 2020 (Epub ahead of print). | |
Kumar R, Kaur A and Agarwal S: Influence of Xmn 1(G)γ (HBG2 c.-211 C → T) globin gene polymorphism on phenotype of Thalassemia patients of North India. Indian J Hematol Blood Transfus. 30:286–290. 2014.PubMed/NCBI View Article : Google Scholar | |
Bandyopadhyay S, Roychowdhury K, Chandra S, Das M and Dasgupta UB: Variable severity of β-thalassemia patients of Eastern India: Effect of α-thalassemia and XmnI polymorphism. Clin Exp Med. 1:155–159. 2001.PubMed/NCBI View Article : Google Scholar | |
Colah RB and Gorakshakar A: Control of thalassemia in India. Thalass Rep. 4(1955)2014. | |
Zhuang J, Zhang N, Wang Y, Zhang H, Zheng Y, Jiang Y, Xie Y and Chen D: Molecular characterization analysis of thalassemia and hemoglobinopathy in Quanzhou, Southeast China: A large-scale retrospective study. Front Genet. 12(727233)2021.PubMed/NCBI View Article : Google Scholar | |
Yin A, Li B, Luo M, Xu L, Wu L, Zhang L, Ma Y, Chen T, Gao S, Liang J, et al: The prevalence and molecular spectrum of α- and β-globin gene mutations in 14,332 families of Guangdong Province, China. PLoS One. 9(e89855)2014.PubMed/NCBI View Article : Google Scholar | |
Kattamis A, Forni GL, Aydinok Y and Viprakasit V: Changing patterns in the epidemiology of β-thalassemia. Eur J Haematol. 105:692–703. 2020.PubMed/NCBI View Article : Google Scholar | |
Nopparatana C, Nopparatana C, Saechan V, Karnchanaopas S and Srewaradachpisal K: Prenatal diagnosis of α- and β-thalassemias in southern Thailand. Int J Hematol. 111:284–292. 2020.PubMed/NCBI View Article : Google Scholar | |
Abdullah UYH, Ibrahim HM, Mahmud NB, Salleh MZ, The LK, Noorizhab MNFB, Zilfalil BA, Jassim HM, Wilairat P and Fucharoen S: Genotype-phenotype correlation of β-thalassemia in Malaysian population: Toward effective genetic counseling. Hemoglobin. 44:184–189. 2020.PubMed/NCBI View Article : Google Scholar | |
Sinha S, Black ML, Agarwal S, Colah R, Das R, Ryan K, Bellgard M and Bittles AH: Profiling β-thalassaemia mutations in India at state and regional levels: Implications for genetic education, screening and counselling programmes. Hugo J. 3:51–62. 2009.PubMed/NCBI View Article : Google Scholar | |
Yamsri S, Pakdee N, Fucharoen G, Sanchaisuriya K and Fucharoen S: Molecular Understanding of Non-Transfusion-Dependent Thalassemia Associated with hemoglobin E-β-Thalassemia in Northeast Thailand. Acta Haematol. 136:233–239. 2016.PubMed/NCBI View Article : Google Scholar | |
Bashyam MD, Chaudhary AK and Bhat V: The IVS-II-837 (T>G) Appears to be a Relatively Common ‘Rare’ β-Globin Gene Mutation in β-Thalassemia patients in Karnataka State, South India. Hemoglobin. 36:497–503. 2012.PubMed/NCBI View Article : Google Scholar | |
Liu D, Zhang X, Yu L, Cai R, Ma X, Zheng C, Zhou Y, Liu Q, Wei X, Lin L, et al: KLF1 mutations are relatively more common in a thalassemia endemic region and ameliorate the severity of β-thalassemia. Blood. 124:803–811. 2014.PubMed/NCBI View Article : Google Scholar | |
Perseu L, Satta S, Moi P, Demartis FR, Manunza L, Sollaino MC, Barella S, Cao A and Galanello R: KLF1 gene mutations cause borderline HbA2. Blood. 118:4454–4458. 2011.PubMed/NCBI View Article : Google Scholar | |
Borgna-Pignatti C, Rugolotto S, De Stefano P, Zhao H, Cappellini MD, Del Vecchio GC, Romeo MA, Forni GL, Gamberini MR, Ghilardi R, et al: Survival and complications in patients with thalassemia major treated with transfusion and deferoxamine. Haematologica. 89:1187–1193. 2004.PubMed/NCBI | |
Taher AT, Bou-Fakhredin R, Kattamis A, Viprakasit V and Cappellini MD: Improving outcomes and quality of life for patients with transfusion-dependent β-thalassemia: Recommendations for best clinical practice and the use of novel treatment strategies. Expert Rev Hematol. 14:897–909. 2021.PubMed/NCBI View Article : Google Scholar |