miR‑515‑5p inhibits the proliferation, migration and invasion of human breast cancer cells by targeting CBX4
- Authors:
- Published online on: September 20, 2021 https://doi.org/10.3892/etm.2021.10763
- Article Number: 1328
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Copyright: © Wen et al. This is an open access article distributed under the terms of Creative Commons Attribution License.
Abstract
Introduction
Breast cancer (BC) is one of the most common types of cancer that affects women worldwide (1). In China, ~304,000 cases of female BC and 70,000 deaths were recorded in 2015(2). A number of factors are involved in the development and promotion of breast malignancy, where the most of which involve changes in the expression profile of microRNAs (miRNAs/miRs) (3,4).
miRNAs are non-coding RNAs that are 21-24 nucleotides in length and post-transcriptionally regulate gene expression by binding to the 3' untranslated regions (UTR) of their mRNA targets (5). Previous studies have demonstrated that miRNAs can regulate an array of signaling pathways, thereby negatively (6) or positively (7) affecting tumorigenesis and various aspects of cancer progression. Particularly in BC, Kim et al (8) revealed that the stable inhibition of miR-155 can reduce tumor growth by decreasing glucose metabolism through the phosphoinositide-3-kinase regulatory subunit 1-pyruvate dehydrogenase complex kinase/AKT-forkhead box O3a-cMYC axis. Shao et al (9) demonstrated that the plasma level of miR-200a was associated with BC staging at the time of surgery, where high levels of miR-210 expression was associated with internal organ metastasis (liver, lung and brain). Therefore, to promote the application of miRNAs in BC diagnosis, treatment and prognosis prediction, deeper understanding into the targets and underlying regulatory mechanisms of miRNAs is of great importance.
miR-515-5p was first detected to be a placenta-specific miRNA present in the maternal circulation (10). Previously, miR-515-5p was found to be differentially expressed in prostate cancer tissues, hepatocellular adenomas and normal tissues (11,12). In addition, knockdown miR-515-5p was reported to promote non-small cell lung cancer cell survival and metastasis and miR-515-5p were downregulated in the C-X-C motif chemokine ligand 6(13). These previous observations suggest that miR-515-5p can be used as a biomarker for the prognosis of patients with cancer and possibly serve as a therapeutic target for cancer.
However, in BC, the role of miR-515-5p is unclear; the present study therefore investigated the function of miR-515-5p in BC.
Materials and methods
Cell lines
The human BC cell lines (MCF7, ZR-75-30, MDA-MB-231 and SKBr-3) and the normal breast cell line (MCF10A) were obtained from the American Type Culture Collection. MCF7 cells were cultured in modified Eagle's medium (cat. no. 30030; Thermo Fisher Scientific, Inc.) supplemented with 1.5 g/l NaHCO3 (Merck KGaA), 10% FBS (Thermo Fisher Scientific, Inc.), 100 U/ml penicillin and 100 mg/ml streptomycin at 37˚C with 5% CO2. MDA-MB-231 and MCF10A cells were cultured in DMEM (cat. no. 11965092; Thermo Fisher Scientific, Inc.) supplemented with 10% FBS, 100 U/ml penicillin and 100 mg/ml streptomycin at 37˚C with 5% CO2. ZR-75-30 and SKBr-3 cells were maintained in RPMI-1640 medium (cat. no. 31870082, Thermo Fisher Scientific, Inc.) supplemented with 10% FBS, 100 U/ml penicillin and 100 mg/ml streptomycin at 37˚C with 5% CO2.
Cell transfection
miR-515-5p mimic (UUCUCCAAAAGAAAGCACUUUCUG), NC mimic (UACUGAGAGACAUAAGUUGGUC), pcDNA3.1-chromobox 4 (CBX4) and their respective negative controls (NC mimic and Lv-NC) were designed and obtained from Shanghai GenePharma Co., Ltd. Cell transfection was performed on MCF7 or ZR-75-30 cells using X-Porator H1 (cat. no. EBXP-H1, Etta Biotech Co., Ltd.), according to the manufacturer's protocol. Briefly, the MCF7 and ZR-75-30 cells were collected and resuspended in the electroporation buffer at 270 mOsm osmolarity, 0.1 S/m conductivity (Etta Biotech Co., Ltd.). The cell concentration was then adjusted to 6x105 cells/ml along with mixed 150 nM miRNA mimics and/or 1 mg/ml plasmid. A total of 100 µl cell suspension mixed with RNAs was then added into a 0.4 mm cuvette and used Matrix needle electrodes for gene transfection using the operator H1. The electroporation device was operated at a direct current square wave with a 180-V voltage, 4 nA, 500-µsec duration, 1-sec intervals and three pulses at room temperature Following electroporation, the cells were diluted to appropriate concentrations in MEM supplemented with 1.5 g/l NaHCO3, 10% FBS and seeded into appropriate cell culture plates at 37˚C with 5% CO2, for use in further assays at 24 h post-electroporation.
miRNAs and mRNA expression
Total RNA from the cells was isolated using the TRIzol® reagent (Thermo Fisher Scientific, Inc.) according to the manufacturer's protocols. MicroRNA levels were measured using TaqMan™ MicroRNA Reverse Transcription kit (cat. no. 4366596; Thermo Fisher Scientific, Inc.). The conditions for RT were 16˚C for 30 min, 42˚C for 30 min and 85˚C for 5 min to terminate the reaction. TaqMan 2X Fast Universal PCR Master Mix (cat. no. 4367846; Thermo Fisher Scientific, Inc.). The thermocycling conditions were 95˚C for 20 sec, followed by 40 cycles of 95˚C for 1 sec and 60˚C for 20 sec. The sequence-specific forward primers for mature miR-515-5p and the U6 internal control were 5'-TTCTCCAAAAGAAAGCACTTTCTG-3' and 5'-CTCGCTTCGGCAGCACA-3', respectively. The reverse primer was the universal reverse primer: 5'-GTGCAGGGTCCGAGGT-3'.
To analyze mRNA expression, both cDNA conversion and qPCR amplification were performed using High-Capacity cDNA Reverse Transcription kit (cat. no. 4368813) at 25˚C for 10 min, 37˚C for 120 min, and heated at 85˚C for 5 min and Fast SYBR®-Green Master mix (cat. no. 4385614; both from Thermo Fisher Scientific, Inc.). The thermocycling conditions were 95˚C for 20 sec, followed by 40 cycles of 95˚C for 1 sec and 60˚C for 20 sec, respectively, according to the manufacturer's protocols. Primers for CBX4 were forward, 5'-TGGAGTATCTGGTGAAATGGA-3' and reverse, 5'-ACGACGGGCAAAGGTAGGCAC-3'. Primer for β-actin were forward, 5'-GTGGGGCGCCCCAGGCACCAGGGC-3' and reverse, 5'-CTCCTTAATGTCACGCACGATTTC-3'.
Cell viability assay
Cell Counting Kit-8 (CCK-8; cat. no. C0037, Beyotime Institute of Biotechnology) colorimetric assay was used to measure cell viability. Briefly, following transfection, MCF7 or ZR-75-30 cells were seeded into 96-well plates with 1x104 cells/well. After 0, 24, 48 and 72 h cultured at 37˚C with 5% CO2, the supernatant was removed before 100 µl MEM or DMEM containing 10 µl CCK-8 was added into each well for 3 h of incubation at 37˚C. A plate reader (Thermo Multiskan MK3 spectrophotometer; Thermo Fisher Scientific, Inc.) was used to measure absorbance at 450 nm. The optical density value was determined and used to construct a growth curve to assess cell viability.
Colony formation assay
MCF7 or ZR-75-30 cells were seeded into 10-cm dishes (1x103 cells/plate) following transfection. The cells were then maintained in complete culture medium (MEM or RPMI-1640, respectively) for another 21 days at 37˚C with 5% CO2. Finally, the cells were fixed in 4% paraformaldehyde at 4˚C for 30 min and stained with Giemsa dye at 25˚C for 30 min. Images of cells were captured by a camera, and the number of clones visible by eye was calculated.
TUNEL assay
After 24 h of transfection, MCF7 or ZR-75-30 cells were fixed with 4% paraformaldehyde and apoptosis was detected using a TUNEL assay, as recommended in the ApopTag® Plus Peroxidase In Situ Apoptosis kit (cat. no. S7101; Merck KGaA). Briefly, the cells were fixed with 4% paraformaldehyde for 30 min at room temperature and permeabilized with 0.1% Triton X-100 in 0.1% sodium citrate for 2 min at 4˚C. The cells were then incubated with 1% TdT enzyme in a humidified atmosphere at 37˚C for 90 min. Subsequently, they were stained with DAPI at a final concentration of 4 µg/ml at 4˚C for 10 min. Finally, the cells were observed under a fluorescence microscope (200x, CKX53; Olympus). An average of 10 random fields with 100-200 nuclei per field was analyzed.
Flow cytometry
The effect of miR-515-5p on the cell cycle was measured by flow cytometry, as previously described (14). Briefly, MCF7 or ZR-75-30 cells were harvested and fixed with 4% paraformaldehyde for 30 min at 4˚C. The cells were then incubated with RNase (50 µg/ml) and PI (50 µg/ml; Thermo Fisher Scientific, Inc.) for 30 min at room temperature. Next, cell cycle profile was measured using a flow cytometry system (BD Accuri C6; BD Biosciences) and the relative ratios of the G0/G1, S and G2/M phases were analyzed by FlowJo V10 software (FlowJo LLC).
Wound healing assay
Wound healing assay was performed to study the migration of MCF7 and ZR-75-30 cells as previously described (15). Briefly, 5x105 MCF7 or ZR-75-30 cells were seeded into each well of a six-well plate. Following transfection for 24 h, a wound was made using a 100-µl pipette tip. Following culture in MEM supplemented with 1.5 g/l NaHCO3, 10% FBS, 100 U/ml penicillin and 100 mg/ml streptomycin at 37˚C with 5% CO2 for another 48 h, the wound recovery area was photographed under a light microscope (200x magnification; CKX41, Olympus) at 0 and 48 h, and evaluated by ImageJ software (version 1.8.0; NIH).
Transwell assay
MCF7 or ZR-75-30 cells were seeded into the upper chamber with 5x105 cells containing MEM or DMEM. By contrast, 10% FBS and complete culture medium were added to the lower chamber. The cells were then cultured for ~48 h at 37˚C with 5% CO2. Next, the cells in the lower chamber were fixed with 4% paraformaldehyde for 30 min at 4˚C and stained with 5% crystal violet at 4˚C for 30 min. Finally, cells were photographed under a light microscope (x100 magnification; cat. no. CKX41; Olympus) and counted in five randomly selected microscope fields.
Dual-luciferase reporter assay
The complementary sequences between miR-515-5p and CBX4 were predicted using Starbase (starbase.sysu.edu.cn/), MCF7 or ZR-75-30 cells were co-transfected with 0.24 µg of the CBX4-wild-type (WT) or CBX4-mutant (Mut) 3'UTR and pmiRGLO Dual-Luciferase Vector were designed and obtained from Shanghai GenePharma Co., Ltd. together with 40 nM miR-515-5p mimic or NC mimic using cell electroporation system operator H1, following the manufacturer's protocols. In addition, 0.05 µg Renilla luciferase expression plasmid was transfected into the cells as a reference control. Subsequently, 48 h after transfection, the cells were collected to measure Firefly and Renilla luciferase activities using the Dual-luciferase reporter assay system (cat. no. E1910; Promega Corporation). The relative luciferase activity was calculated as the ratio of Firefly and Renilla luciferase activities.
Western blot analysis
MCF7 or ZR-75-30 cells were harvested using RIPA lysis buffer (P0013B; Beyotime Institute of Biotechnology) and quantified by BCA assay. The total protein (40 µg) was then separated on 12% SDS-PAGE and transferred onto PVDF membranes (EMD Millipore) using a MiniGenie blotting system (Bio-Rad Laboratories, Inc.). Next, the membranes were blocked with TBS-1% Tween-20 (TBST) containing 1% skim milk powder for 1 h at room temperature and then incubated with rabbit monoclonal antibodies (Cell Signaling Technology, Inc.) against human prostaglandin-endoperoxide synthase 2 (Cox-2; cat. no. 12282T; dilution, 1:1,000), MMP2 (cat. no. 40994S; dilution, 1:1,000), MMP9 (cat. no. 13667S; dilution, 1:1,000), cyclin D1 (cat. no. 55506S; dilution, 1:1,000) cyclin dependent kinase 2 (CDK2; cat. no. 2546S; dilution, 1:1,000), proliferating cell nuclear antigen (PCNA; cat. no. 13110S; dilution, 1:1,000), β-actin (cat. no. 4970T; dilution, 1:1,000) and CBX4 (cat. no. 30559; dilution, 1:2,000) at 4˚C overnight. Following washing with TBST, the membranes were incubated with goat anti-rabbit secondary antibodies (cat. no. 5127; dilution, 1:10,000; Cell Signaling Technology, Inc.) for 1 h at room temperature. Finally, the protein brands were visualized with an enhanced chemiluminescence system (P0018FS; Beyotime Institute of Biotechnology) and semi-quantified with ImageJ software (version 1.46; National Institutes of Health).
Statistical analysis
All experiments were performed in triplicate. GraphPad Prism (version 6.01 for Windows; GraphPad Software, Inc.) statistical software was used to perform the statistical analysis. One-way-ANOVA (parametric) followed by Tukey's post hoc test was used to compare the significant differences between groups. P<0.01 was considered to indicate a statistically significant difference.
Results
miR-515-5p inhibits cell proliferation of MCF7 and ZR-75-30 cells
To confirm if miR-515-5p participates in BC progression, its expression level in BC cell lines MCF7, ZR-75-30, MDA-MB-231, SKBr-3 and the normal breast cell line MCF10A was compared using RT-qPCR. The results showed that the expression of miR-515-5p in human BC lines was significantly lower compared with that in the normal breast cell line (P<0.01; Fig. 1A).
To evaluate the possible effects of miR-515-5p expression on BC progression, MCF7 and ZR-75-30 cells were transfected with miR-515-5p or NC mimics. RT-qPCR results showed that transfection with the miR-515-5p mimic could significantly upregulate miR-515-5p expression in MCF7 and ZR-75-30 cells compared with that in cells transfected with the NC mimic (P<0.01; Fig. 1B). In addition, CCK-8 assay data showed that miR-515-5p mimic transfection could significantly reduce the viability of MCF7 and ZR-75-30 cells compared with that in cells transfected with the NC mimic (P<0.01; Fig. 1C). Colony formation assay results revealed that transfection with the miR-515-5p mimic significantly reduced the proliferation of MCF7 and ZR-75-30 cells (P<0.01; Fig. 1D). In conclusion, these data suggest that miR-515-5p overexpression could inhibit BC cell proliferation.
miR-515-5p facilitates cell apoptosis and induces cell cycle arrest at the G0/G1 phase in MCF7 and ZR-75-30 cells
The regulation of apoptosis and cell cycle arrest has been found to play an important role in cell proliferation (13). To reveal the mechanism of miR-515-5p in BC cell proliferation, TUNEL and flow cytometric assays were performed to detect the potential effects of miR-515-5p on cell apoptosis and cell cycle progression. First, results from the TUNEL assay indicated that miR-515-5p mimic transfection could significantly facilitate MCF7 and ZR-75-30 cell apoptosis compared with that in cells transfected with the NC mimic (P<0.05 and P<0.01; Fig. 2A). Next, data from the flow cytometric assay suggest that the miR-515-5p mimic significantly increased the percentage of cells at the G0/G1 phase and decreased the ratio of cells at G2/M phase in both MCF7 and ZR-75-30 cells (P<0.01; Fig. 2B). Finally, western blot analysis was performed to assess the expression of cell cycle-related proteins. The results showed that, miR-515-5p mimic transfection significantly reduced the expression levels of cyclin D1, CDK2 and increased the expression level of p21 proteins compared with those in cells transfected with the NC mimic (P<0.05 and P<0.01; Fig. 2C). These results suggest that miR-515-5p can promote cell apoptosis whilst inducing cell cycle arrest at the G0/G1 phase in BC.
miR-515-5p inhibits cell migration of MCF7 and ZR-75-30 cells
To further investigate the effect of miR-515-5p on the migration and invasion in BC cells, wound healing and Transwell assays were performed. Results from the wound healing assay indicated that miR-515-5p mimic transfection significantly decreased the wound closing abilities of MCF7 and ZR-75-30 cells compared with those in cells transfected with the NC mimic (P<0.01; Fig. 3A), suggesting that miR-515-5p overexpression could inhibit cell migration. Similarly, Transwell assay results also demonstrated that miR-515-5p mimic transfection significantly inhibited cell invasion in MCF7 and ZR-75-30 cells compared with that in cells transfected with the NC mimic (P<0.05 and P<0.01; Fig. 3B). Subsequently western blot analysis showed that miR-515-5p mimic transfection decreased the expression levels of migration-related proteins MMP2, MMP9 and Cox-2 compared with those in cells transfected with the NC mimic (P<0.01; Fig. 3C). Collectively, these results suggest that miR-515-5p overexpression decreased the migratory and invasive abilities of BC cells in vitro.
miR-515-5p inhibits CBX4 expression by directly binding to the 3'-UTR of CBX4
To explore the underlying mechanism of miR-515-5p in regulating BC progression, StarBase was used to screen for miR-515-5p target genes, where and CBX4 was found to harbor complementary binding sites for miR-515-5p (Fig. 4A). Therefore, a dual-luciferase reporter assay was used to verify this interaction. Consistent with bioinformatics analysis, the luciferase reporter assay results indicated that the miR-515-5p mimic could significantly downregulate the luciferase activity of CBX4 WT but not that of CBX4 Mut (P<0.01; Fig. 4B). Both RT-qPCR (Fig. 4C) and western blot analysis (Fig. 4D) results demonstrated that miR-515-5p mimic transfection could significantly decrease the mRNA and protein levels of CBX4 compared with those in cells transfected with the NC mimic (P<0.01). To confirm if CBX4 participates in BC progression, its expression level in BC cell lines MCF7, ZR-75-30, MDA-MB-231, SKBr-3 and the normal breast cell line MCF10A was compared using RT-qPCR. The results showed that the expression of CBX4 in human BC lines was significantly higher compared with that in the normal breast cell line (P<0.01; Fig. 4E). These data suggest that miR-515-5p could inhibit the gene expression of CBX4 by directly binding to the 3'-UTR of CBX4 in BC cells.
Overexpression of CBX4 reverses the effects of miR-515-5p mimic in MCF7 and ZR-75-30 cells
To confirm the association between miR-515-5p and CBX4, MDA-MB-157 cells were co-transfected with miR-515-5p or NC mimics and Lv-CBX4 or Lv-NC. RT-qPCR data showed that Lv-CBX4 transfection could significantly upregulate the expression of CBX4 in MCF7 and ZR-75-30 cells compared with that in cells transfected with the Lv-NC (P<0.01; Fig. 5A). To test the effect of the overexpression of CBX4 in BC cells viability, CCK-8 assay was conducted. The results showed that co-transfection with miR-515-5p mimic and Lv-CBX4 could significantly increase the viability of MCF7 and ZR-75-30 cells compared with that in cells co-transfected with the miR-515-5p mimic and Lv-NC (P<0.05; Fig. 5B). Colony formation assay results showed that Lv-CBX4 co-transfection could promote the colony formation of MCF7 and ZR-75-30 cells transfected with miR-515-5p mimic, as compared with that of cells transfected with the Lv-NC and the miR-515 mimic (P<0.05; Fig. 5C). TUNEL assay results indicated that Lv-CBX4 co-transfection could inhibit the apoptosis of MCF7 and ZR-75-30 cells transfected with the miR-515-5p mimic compared with that in cell co-transfected with Lv-NC and miR-515 (P<0.05 and P<0.01; Fig. 5D). Finally, Transwell assay data revealed that Lv-CBX4 co-transfection could promote the migration of MCF7 and ZR-75-30 cells transfected with the miR-515-5p mimic compared with that in cells co-transfected with Lv-NC and miR-515-5p mimic (P<0.05 and P<0.01; Fig. 5E). These results suggest that the overexpression of CBX4 can partially reverse the effects of miR-515-5p overexpression on BC cell downregulation.
Discussion
BC is the leading cause of cancer-related mortality in women worldwide (1). Since BC is a multifactorial disease, unraveling the molecular changes associated with this type of cancer can potentially provide preventative and therapeutic strategies for this disease (3,16). In BC, a number of miRNAs, such as miR-148b, miR-376c, miR-409-3p and miR-801 have been identified as potential therapeutic targets (17,18). In the present study, miR-515-5p expression was found to be downregulated in BC cell lines. Since the expression of miR-515-5p was the lowest in MCF7 and ZR-75-30 cells out of all BC cell lines tested, these two cell lines were selected to be models for further study. It was found that miR-515-5p overexpression inhibited the proliferation, migration and invasion of MCF7 and ZR-75-30 cells by suppressing the expression of CBX4. This preliminary study indicated that miR-515-5p may be a promising candidate for BC treatment.
miRNAs serve important roles in the onset, progression and metastasis of cancer by regulating the stability of target mRNAs or by inhibiting their translation (19). For example, miR-107 could inhibit autophagy, proliferation and migration in BC cells (MDA-MB-231, MDA-MB-453) by targeting high mobility group box 1 protein (20). There are numerous studies on the association between miR-515-5p and cancer. For instance, low miR-515-5p levels were found to be correlated with poor survival in samples from patients with gastric cancer on The Cancer Genome Atlas database (21). In addition, high miR-515-5p expression was correlated with increased survival of patients with BC, such that miR-515-5p can control cancer cell migration by regulating microtubule affinity regulating kinase 4(22). In BC, miR-515-5p was significantly downregulated in estrogen receptor (ER)-positive compared with that in ER-negative BC (23). Furthermore, miR-515-5p was previously found to partly modulate the proliferation of BC cells by regulating the Wnt pathway (23).
The present data showed that increasing the expression of miR-515-5p inhibited the proliferation of MCF7 and ZR-75-30 cells by facilitating cell apoptosis whilst arresting the cell cycle at the G0/G1 phase. Western blot analysis confirmed that the expression of cyclin D1, CDK2 that involved in G0/G1 phase were decreased and p21 proteins were increased by transfection with the miR-515-5p mimic. These findings were also supported by the observations the migration and invasion-associated protein expression of Cox-2, MMP2 and MMP9 were decreased by miR-515-5p mimic transfection. Subsequently, CBX4 was predicted by StarBase to be a direct target of miR-515-5p, which was further validated by luciferase report assays to demonstrate that miR-515-5p interacts directly with the 3'UTR of CBX4.
CBX4, also known as hPC2 or NBP16, is a canonical component of the polycomb repressive complex 1, which is associated with a variety of tumors (24). CBX4 is directly involved in the DNA damage response pathway and regulates DNA modification, stability and terminal repair (24). CBX4 has been found to promote proliferation and metastasis in lung cancer (25) and hepatocellular carcinoma (26). CBX4 has also been reported to mediate miR-129-5p-induced inhibition of cell proliferation in BC (27). The present results suggest that miR-515-5p overexpression can decrease the expression of CBX4 in MCF7 and ZR-75-30 cells by directly interacting with the 3'UTR of CBX4. Additionally, overexpression of CBX4 reversed the effects of miR-515-5p on the proliferation, migration and invasion of MCF7 and ZR-75-30 cells. CBX4 has been reported to be involved in the small ubiquitin-like modifier (SUMO) modification of DNA methyltransferase 3A, PR domain containing 16, B cell-specific moloney murine leukemia virus integration site 1 and hypoxia-induced factor-1α, as a SUMO E3 ligase (24,28-30). Therefore, miR-515-5p could mediate the SUMO modification states of proteins in breast cancer cells by targeting CBX4.
In conclusion, the present study demonstrated the function of miR-515-5p in MCF7 and ZR-75-30 cells as a breast cancer model. Specifically, miR-515-5p could regulate the cell viability and proliferation of BC cells by targeting CBX4, thereby inhibiting the migration and invasion of BC cells. The present study promoted the understanding of the mechanism via which miR-515-5p regulates the progression and metastasis of BC.
Acknowledgements
Not applicable.
Funding
Funding: The present study was supported by The Tianjin Municipal Education Commission Scientific Research Plan Project (grant no. 2020KJ145).
Availability of data and materials
The datasets used and/or analyzed during the current study are available from the corresponding author on reasonable request.
Authors' contributions
PYT and LJW designed the study and performed the experiments. PYT and YSW analyzed the data. LJW and PYT confirm the authenticity of all the raw data. All authors read and approved the final version of this manuscript.
Ethics approval and consent to participate
Not applicable.
Patient consent for publication
Not applicable.
Competing interests
The authors declare that they have no competing interests.
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