MicroRNA‑431 inhibits the expression of surfactant proteins through the BMP4/activin/TGF‑β signaling pathway by targeting SMAD4
- Authors:
- Published online on: February 24, 2020 https://doi.org/10.3892/ijmm.2020.4511
- Pages: 1571-1582
Abstract
Introduction
In the last 25 years, the rate of preterm births has increased by approximately one-third globally (1). The majority of preterm infants are born during the saccular stage of lung development (26 to 36 gestational weeks), while the lung structure is immature, with deficient surfactant proteins (SPs), delayed absorption of intrapulmonary fluid and inefficient gas exchange (2). Accumulating evidence in previous years has demonstrated a consistently high risk of respiratory morbidity in infants born at <37 weeks of gestation (3). Lung development is a complex process with a series of orchestrated events. Premature birth interrupts normal lung development, which results in a series of respiratory diseases (4). Neonatal respiratory distress syndrome (RDS), a condition of pulmonary insufficiency that in its natural course commences at or shortly following birth and increases in severity over the first 48 h of life, is a common disease in preterm babies (5). RDS occurs in ~45% of early or moderate-preterm infants (23–33 weeks of pregnancy) (5). The main cause of RDS is a deficiency of SPs along with structural immaturity (4,5). Thus, improving the understanding of lung development may hold promise for improving the prevention and treatment of respiratory diseases in preterm infants.
MicroRNAs (miRNAs/miRs) are a class of small non-coding RNAs that are ~22 nucleotides long, and that inhibit the translation of target mRNAs, serving an important function in cell proliferation, differentiation and organ development (6). A number of studies have documented that >100 miRNAs undergo substantial changes in expression during lung development (6,7). However, little is known about if or how they regulate lung development. A previous study reported that miR-431 expression is higher in preterm infants with RDS compared with those without RDS (8). Additionally, miR-431 was revealed to be downregulated in the lung tissues of Sprague-Dawley rats at 3 time points, embryonic day 19, embryonic day 21 and postnatal day 3, by reverse transcription quantitative PCR (RT-qPCR) and fluorescence in situ hybridization (9).
Alveolar epithelial type II (AECII) cells are specialized epithelial cells for maintaining lung function and homeostasis, and are able to regulate the metabolism of alveolar surfactants, express innate immune molecules, and regenerate and restore alveoli in response to an injury (10,11). Tumor AECII cell lines fail to fully recapitulate alveolar epithelial cell phenotypes in vivo. However, the A549 cell line is a classic human type II alveolar epithelial cell line, which contains lamellar bodies producing surfactant and containing a phospholipid content similar to that of AECII cells in situ (12). Therefore, A549 cells have the majority of the functions of type II cells. In a previous study, SMAD family member 4 (SMAD4) was identified as an important target of miR-431 in A549 cells; the overexpression of miR-431 was able to accelerate the proliferation of A549 cells, inhibit apoptosis and downregulate the expression of SPs (13,14). Thus, it was hypothesized that miR-431 is critical for the expression of SPs and it serves a regulatory function similar to the bone morphogenetic protein 4 (BMP4)/activin/transforming growth factor β (TGF-β) signaling pathway.
As a member of the SMAD family, SMAD4 is a common mediator of the TGF-β signaling pathway. One previous study reported that, in the canonical signaling pathway, activated SMAD2 and SMAD3 form a complex with SMAD4, a component shared by all TGF-β family members, and this complex translocates to the nucleus to regulate the transcription of target genes (15). Notably, increasing evidence suggests that SMAD4-dependent TGF-β signaling serves an important function in the differentiation of endodermal cells and inhibits the epithelial to mesenchymal transition process, which is essential for lung branching morphogenesis (16,17). BMP4 belongs to the TGF-β superfamily and is a multifunctional peptide with important functions in normal lung development (18).
In the present study, the functions of miR-431 and its target gene SMAD4 were investigated to follow on from previous studies. The present study aimed to determine the potential mechanisms of miR-431 in the regulation of lung development. The results of the present study may provide crucial molecular and cellular evidence of the potential of miR-431 as a marker of fetal lung development and as a therapeutic target for lung developmental diseases.
Materials and methods
Cell culture
The human non-squamous cell lung carcinoma line (A549 cell line), obtained from the American Type Culture Collection (Manassas, VA, USA), were seeded and grown in Dulbecco’s modified Eagle’s medium (DMEM; Gibco; Thermo Fisher Scientific, Inc., Waltham, MA, USA) supplemented with 10% fetal bovine serum (FBS; Gibco; Thermo Fisher Scientific, Inc.) and (100 U/ml) 1% penicillin and 100 μg/ml streptomycin; Gibco; Thermo Fisher Scientific, Inc.) at the condition of 37°C in a humidified incubator containing 5% CO2.
Generating stable cell lines with lentivirus
The lentivirus of the overexpression of SMAD4 (LV-SMAD4+), the lentivirus of the knockdown of SMAD4 (LV-SMAD4−) and their corresponding controls (LV-SMAD4+-NC and LV-SMAD4−-NC) were obtained from Shanghai GenePharma Co., Ltd. (Shanghai, China). LV-SMAD4+ and LV-SMAD4+-NC were used with adenovirus-based vectors containing the green fluorescent protein (GFP) gene and puromycin-resistant marker (cat. no. AAV5-EF-1a-GFP&Puro; Shanghai GenePharma Co., Ltd.), while LV-SMAD4− and LV-SMAD4−-NC were used with different adenovirus-based vectors containing the GFP gene and puromycin-resistant marker (cat. no. AAV3-H1-GFP&Puro; Shanghai GenePharma Co., Ltd.). In detail, LV-SMAD4+ synthesized and cloned the SMAD4 gene (gene ID: NM_005359.5) into the vector AAV5-EF-1a-GFP&Puro, and LV-SMAD4+-NC used the empty vector AAV5-EF-1a-GFP&Puro. Meanwhile, LV-SMAD4− synthesized and cloned the SMAD4-homo-1506 (5′-GGTGTTCCATTGCTTACTTTG-3′) into the vector AAV3-H1-GFP&Puro, and LV-SMAD4−-NC synthesized and cloned a universal sequence (5′-TTCTCCGAACGTGTCACGT-3′) into the vector AAV3-H1-GFP&Puro. In additional, the LV-SMAD4− knockdown of endogenous SMAD4 was performed. To minimize the off-target effects of RNA interference, three potential sequences targeting the human SMAD4 gene were constructed and the shRNA sequence (5′-GGTGTTCCATTGCTTACTTTG-3′) was selected for the subsequent experiment. The selected SMAD4 shRNA sequence and a scrambled sequence (5′-TTCTCCGAACGTGTCACGT-3′) with no homology to any known human genes were synthesized and ligated into the AAV3-H1-GFP&Puro adenovirus-based vector. A549 cell lines were cultured in the 96-well plate at a concentration of 5x104 cells/well, mixed and incubated at the condition of 37°C in a humidified incubator containing 5% CO2 for 24 h. Then, 10 μl lentiviral stock was diluted 1:10 in DMEM medium containing 10% FBS, and polybrene was added at a concentration of 5 μg/ml. Next, the culture medium was aspirated in a 96-well plate, and 100 μl of each of the aforementioned diluted virus solution was added to each well, a blank control group was set up, and incubated with Polybrene (Shanghai GenePharma Co., Ltd.) to a final concentration 6 μg/ml for 24 h at 37°C in a humidified incubator containing 5% CO2. Finally, the diluted virus solution was aspirated from the 96-well plate and 100 μl DMEM containing 10% FBS was added to each well and cultured for 72 or 96 h, and the lentivirus infection efficiency was observed under an optical microscope (x100 magnification; DM2500; Leica Microsystems GmbH, Wetzlar, Germany) and a fluorescent microscope (BX51; Olympus Corporation, Tokyo, Japan). Meanwhile, a concentration gradient of puromycin was established (0, 0.1, 0.2, 0.4, 0.6, 0.8, 1.0, 1.2, 1.5, 2.0, 2.5 and 3.0 μg/ml; Sigma-Aldrich; Merck KGaA, Darmstadt, Germany) to screen for the optimal puromycin concentration that completely killed the cells. Finally, the stable cell lines were verified by RT-qPCR and western blotting.
miR-431 mimic, miR-431 inhibitor and cell transfection
miR-431 mimic, miR-431 inhibitor and the corresponding control (mimic-NC and inhibitor-NC) were synthesized by Guangzhou RiboBio Co., Ltd. Stable cell lines (LV-SMAD4+ and LV-SMAD4−) were transfected with miR-431 mimics, an miR-431 inhibitor and the corresponding negative control with Lipofectamine 3000 (Invitrogen; Thermo Fisher Scientific), according to the manufacturer’s protocol. Mixture A contained 125 μl DMEM and 5 μl Lipofectamine 3000. Mixture B contained 125 μl DMEM and 10 μl mimic or inhibitor or the corresponding control. The two mixtures were left to stand at room temperature for 10 min initially, and then mixed and left for a further 10 min. The complex was then added to each well of the 6-well plate and incubated for 24 h at 37°C. Finally, the Lipofectamine 3000 mixture was aspirated, and DMEM supplemented with 10% FBS was added and cultured for 48 h. In brief, cells (LV-SMAD4+ and LV-SMAD4−) were plated in 6-well plates. When cells reached a confluence of ~50% in complete growth medium, cells were transfected with 50 nM mimics or 100 nM inhibitors and incubated for 48 or 72 h for RNA or protein extraction. The miR-431 sequence used was accession no. MIMAT0001625, 5′-UGUCUUGCAGGCCGUCAUGCA-3′.
RNA extraction, cDNA synthesis and RT-qPCR
Total RNA was isolated from cells (A549 cells treated as above) by TRIzol reagent (Invitrogen; Thermo Fisher Scientific, Inc.). The RNA concentration were detected using a NanoDrop2000 Spectrophotometer (Thermo Fisher Scientific, Inc.). The conversion of miR-431 into cDNA was performed with the HiScript®II Q Select RT SuperMix for qPCR (cat. no. R232-01; Vazyme, Piscataway, NJ, USA) according to the manufacturer’s protocol [including 4 μl 5x HiScript II Select qRT SuperMix, 1 μl miR-431-primer (50 ng/μl) and 1 μg RNA]. The RT primer of miR-431 was designed and synthesized by Generay Biotech Co., Ltd. and is listed in Table I. Reverse transcription of 1 μg RNA isolated from A549 cells into cDNA was performed using the HiScript®II Q Select RT SuperMix for qPCR (cat. no. R222-01; Vazyme) according to the manufacturer’s protocol [including 4 μl 5x HiScript II Select qRT SuperMix and 1 μg RNA]. The RT reaction was conducted at 37°C for 15 min and 85°C for 2 min. Next, the RT-qPCR reaction was performed with AceQ® qPCR (cat. no. Q131-01; Vazyme) according to the manufacturer’s protocol (including 1 μl cDNA, 5 μl SYBR® Green Master Mix, 0.2 μl reverse and forward primers and 3.6 μl diethypyrocarbonate water) on an ABI 7500 thermal cycler (Applied Biosystems; Thermo Fisher Scientific, Inc.). The thermocycling conditions included an initial step at 95°C for 5 min, 40 cycles at 90°C for 15 sec and at 60°C for 15 sec, 72°C for 1 min and final extension at 72°C for 10 min. U6 was used as the internal control of miR-431. GAPDH was used as the internal control of all other genes (SMAD4, BMP4 and SPs). All primer sequences used were designed and synthesized by Generay Biotech Co., Ltd. and are listed in Table I. The relative mRNA expression was measured using the 2−ΔΔCq method (19).
Western blotting
Cells (A549 cells treated as above) were harvested and lysed in RIPA buffer (Beyotime Institute of Biotechnology) containing a protease inhibitor and phosphatase inhibitor cocktail (Beyotime Institute of Biotechnology). Following incubation at 4°C for 10 min, the total lysates were centrifuged at 1,400 x g for 15 min at 4°C, and then the supernatant was extracted. Protein concentration was determined with bicinchoninic acid protein assay kit (cat. no. G2026; Servicebio Inc.), according to the bicinchoninic acid protein quantification method (sourced from Beyotime Institute of Biotechnology). Subsequently, 2 μl 5xSDS-PAGE (Beyotime Institute of Biotechnology) loading buffer was added to 8 μl supernatant for 10 min at 100°C. Approximately 40 μg protein per well was separated by 10% SDS-PAGE electrophoresis (Bio-Rad Laboratories, Inc.), transferred to polyvinylidene fluoride membranes (EMD Millipore), blocked with 5% skimmed milk powder in tris-buffered saline with 0.05% Tween-20 (TBST) buffer for 1 h at room temperature, and then immunoblotted with primary antibodies overnight at 4°C. Subsequent to washing four times with TBST, the membranes were further incubated with the horseradish peroxidase-conjugated anti-rabbit secondary antibody (1:2,000; cat. no. 7074; Cell Signaling Technology, Inc.) for 2 h at room temperature. Finally, immunodetection was performed using an Enhanced Chemiluminescence system (cat. no. G2014; Servicebio Inc.) and analyzed using ImageJ software (version 2.1; National Institutes Health), following a further four washes with TBST. All antibodies used for western blotting were as follows: Anti-Smad4 (1:1,000; cat. no. 46535; Cell Signaling Technology, Inc.), anti-BMP4 (1:10,000; cat. no. ab124715; Abcam, Cambridge, MA, USA), anti-SP-A (1:1,000; cat. no. sc-80621; Santa Cruz Biotechnology, Inc.), anti-SP-B (1:1,000; cat. no. sc-133143; Santa Cruz Biotechnology, Inc.), Anti-proSP-C (1:500; cat. no. 2464523; EMD Millipore) and anti-β-actin (1:5,000; cat. no. 4967; Cell Signaling Technology, Inc.).
Statistical analysis
All data were presented as the mean ± standard deviation. The data were analyzed using SPSS 17.0 (SPSS, Inc.) and GraphPad Prism 5.0 (GraphPad Software, Inc.) statistical packages, and evaluated using a Student’s t-test between the two groups. P<0.05 was considered to indicate a statistically significant difference.
Results
Effect of SMAD4 on the expression of SPs and the BMP4/activin/TGF-β signaling pathway
The optimal puromycin concentration was determined to be 1.2 μg/ml, and the efficiency of lentivirus infection was observed by microscope after 72 and 96 h (Fig. 1). To confirm the transfection efficiency of LV-SMAD4+ and LV-SMAD4− in A549, SMAD4 expression levels were determined by RT-qPCR and western blotting. LV-SMAD4+ transfection significantly increased the expression levels of SMAD4 in cells compared with LV-SMAD4+-NC (P<0.0005), and LV-SMAD4− significantly decreased the expression of SMAD4 compared with LV-SMAD4−-NC (P<0.05; Figs. 2A and 3A and B). Furthermore, to investigate whether SMAD4 serves a function in SP expression via the BMP4/activin/TGF-β signaling pathway, the expression levels of SPs (SP-A, SP-B and SP-C) and BMP4 were determined by RT-qPCR. It was revealed that SP-A, SP-B, SP-C and BMP4 exhibited increased expression levels in LV-SMAD4− cells compared with LV-SMAD4−-NC (P<0.001). On the contrary, the expression levels of the SPs and BMP4 were significantly decreased in LV-SMAD4+ cells compared with LV-SMAD4+-NC cells (P<0.0005; Fig. 2). To confirm this effect at the protein level, cell lines with stable lentivirus transfection were harvested for western blotting. Similar results were observed via western blotting, although the differences were not as significant as those observed by RT-qPCR (Fig. 3). In addition, miR-431 expression levels were also significantly increased when SMAD4 was overexpressed compared with LV-SMAD4+-NC cells (P<0.0001; Fig. 2).
miR-431 inhibits the expression of SPs by inhibiting the BMP4/activin/TGF-β signaling pathway
A previous study demonstrated that miR-431 may negatively regulate lung development by targeting SMAD4 (13). In the present study, the mechanism of the miR-431-mediated inhibition of the expression of SPs via BMP4/activin/TGF-β signaling in A549 cells treated with SMAD4 was investigated. A549 cells were treated with miR-431 mimic in combination with LV-SMAD4−, which resulted in the significantly increased expression levels of BMP4 (P<0.0001) and significantly reduced expression levels of the SPs (P<0.05) at the mRNA level compared with cells transfected with miR-431 mimic-NC. On the contrary, cells treated with the miR-431 inhibitor in combination with LV-SMAD4− exhibited significantly reduced expression levels of BMP4 (P<0.001) and significantly increased expression levels of SPs (P<0.05) at the mRNA level compared with cells transfected with miR-431 inhibitor-NC (Fig. 4). The changes in protein expression levels of the SPs were consistent with the changes at mRNA level, while the relative expression levels of BMP4 at the protein level was different to that observed at the mRNA level (Fig. 5). Overexpression of miR-431 combined with LV-SMAD4+ resulted in the significantly reduced expression levels of SPs (P<0.05), and the expression levels of BMP4 were significantly increased at the mRNA and protein levels (P<0.05) compared with the negative control. Cells with the inhibition of miR-431 combined with LV-SMAD4+ exhibited significantly increased expression levels of SPs (P<0.05) and reduced expression levels of BMP4 (P<0.05) at the mRNA and protein levels compared with the inhibitor-NC group. In addition, the expression of SMAD4 was determined subsequent to transfecting miR-431 into LV-SMAD4+ cells, and it was revealed that miR-431 significantly downregulated the expression of SMAD4 compared with the mimic-NC group (P<0.001; Figs. 6 and 7).
Discussion
Lung development is divided into five stages, the embryonic, pseudoglandular, canalicular, saccular and alveolar stages, and it extends from the embryonic period through the fetal period up to birth and subsequent development (20). Based on the morphological maturity, and the synthesis and secretion of SPs, the main function of the lung is effective gas and blood exchange (7,20). Evidence has demonstrated that a number of miRNAs (21), including miR-302/367 (22) and the miR-17-92 cluster (23), and multiple signaling pathways, including Hippo (24,25), WNT (26,27) and vascular endothelial growth factor (28,29), participate in the regulation of lung specification and maturation (7). In previous studies, the levels of miR-431 were demonstrated to decline during rat lung development and demonstrated a higher expression in preterm infants with RDS compared with those without RDS (8,9,14,30). SMAD4 was identified as a target gene of miR-431 via TargetScan and luciferase reporter assays, and SPs were differentially expressed in A549 cells overexpressing miR-431 or with miR-431 knocked down (13). In the present study, SMAD4 was revealed to negatively regulate the expression of BMP4 and SPs in A549 cells when overexpressed. As a member of the SMAD family, SMAD4 is mainly expressed in the epithelial cytoplasm, and is associated with other SMADs to negatively regulate lung morphogenesis (31). In addition, a previous study demonstrated that newborn mice with long-term exposure to hyperoxia exhibited the upregulation of SMAD4 and dampening of the BMP4 signaling pathway, which resulted in AECII functional defects, obstruction of normal alveolarization and formation of bronchopulmonary dysplasia (32). The results of the present study are consistent with those reports. In addition, in the present study, the expression level of miR-431 was lower in the SMAD4 knockdown group, indicating that miR-431 negatively regulates the expression of SPs.
The molecular mechanism of miR-431-mediated regulation of the expression of SPs was investigated in the present study by overexpressing or knocking down miR-431, combined with the overexpression or knockdown of SMAD4. The expression of SPs was reduced in the SMAD4 knockdown group via overexpressing miR-431, and increased in the SMAD4 overexpression group via inhibiting miR-431. However, the expression of BMP4 was inconsistent at the protein and mRNA levels in the LV-SMAD4− stable cell line with overexpression or knockdown of miR-431. This inconsistency may be due to the following reasons: i) Transcription of mRNA and protein levels are not necessarily parallel; ii) occasionally, the rate and degree of degradation of mRNA may have impacted the results; iii) post-translational modification of the protein may impact the rate of degradation. Meanwhile, this inconsistency may result in the differences in the expression of SPs at the protein level being not as significant as those observed by RT-qPCR in the LV-SMAD4− stable cell line with overexpression or knockdown of miR-431. Overall, the results indicated that miR-431 negatively regulates the expression of SPs through the inhibition of the BMP4/activin/TGF-β signaling pathway.
BMPs are multifunctional growth factors belonging to the TGF-β superfamily, and they function through serine/threonine receptor kinases, composed of type I and II subtypes (33,34). The type I receptor kinases may be transphosphorylated by the type II receptor kinases in the TGF-β system, and interact with SMADs, including SMAD1, SMAD5, SMAD8 and SMAD4, to translocate to the nucleus and participate in the regulation of transcription together with other transcription factors (33). The BMP4/activin/TGF-β signaling pathway functions in lung development, from mesodermal differentiation to the saccular and alveolarization stages of late lung development (33,34). One study has demonstrated that homozygous BMP4 mutant embryos die between embryonic stage 6.5 and 9.5, and have little or no mesodermal differentiation (35). Addition of BMP4 to the medium surrounding lungs grown in organ culture stimulates cell proliferation and branching morphogenesis (36). Additionally, BMP4/activin/TGF-β signaling is active during late lung development, indicating that the BMP4/activin/TGF-β signaling pathway serves a notable function in septal and vascular development, and maintains homeostasis of the epithelial layer of the large conducting airways in the mature lung (34). The present results suggest that the BMP4/activin/TGF-β signaling pathway also regulates the expression of SPs. miR-431 may inhibit the BMP4/activin/TGF-β signaling pathway by targeting SMAD4.
Pulmonary surfactant (PS) is stored in the lamellar bodies of AECII cells (37). PS is a complex of lipids, proteins and carbohydrates, containing at least 4 types of proteins, including SP-A, SP-B, SP-C and SP-D. SP-C is the predominant PS-associated protein, followed by SP-B, SP-A and SP-D in terms of concentration, SP-D is the only type that does not have lipid-containing structures, while the other 3 types (SP-A, SP-B and SP-C) have lipid-containing structures (38,39). The quantity of PS is one of the most important indicators of the grade of pulmonary maturity and is closely associated with fetal development (40). The majority of preterm births occur during the late canalicular or saccular stage (weeks 26–36), when distal epithelial progenitors start to give rise to bipotential alveolar epithelial progenitors, and AECII cells are just starting to produce PS (2). PS reduces the surface tension within the alveoli and enhance alveolar expansion, allowing for gas exchange. PS deficiency increases the incidence of alveolar atelectasis, which further reduces the carbon dioxide and oxygen exchange between the pulmonary capillaries and alveoli and ventilation perfusion ratio (V/Q) mismatching ensues (41,42). PS deficiency exacerbates hypoxemia, hypercarbia and acidosis (41). This is a key mechanism through which PS deficiency causes RDS in preterm infants, resulting in tachypnea, retractions of alveoli, nasal flaring, diminished breath sounds, inspiratory crackles, cyanosis and pallor (42). RDS remains a common disease in preterm infants, although prenatal steroids, respiratory support and PS replacement for neonates have reduced the occurrence (1). Thus, a complete understanding of the molecular mechanisms of lung development, particularly in the synthesis and secretion of PS, is critical for improving clinical practice.
In conclusion, the present study revealed that miR-431 negatively regulates the expression of SPs via inhibition of the BMP4/activin/TGF-β signaling pathway by targeting SMAD4 in A549 cells in vitro. These results indicate that the suppression of miR-431 may promote the expression of SPs. However, the present study was performed in vitro with only one cell line and does not clarify the connection with other signaling pathways in lung developmental. Therefore, in vivo studies are required to verify whether miR-431 is able to regulate the expression of SPs via inhibition of the BMP4/activin/TGF-β signaling pathway by targeting SMAD4. Thus, the specific inhibitors and agonists of key signaling molecules will be used to further investigate the mechanisms of miR-431-mediated lung development in vitro. A tissue-specific miR-431 knockout mouse model will be built using the CRISPR/Cas9 system to further investigate how miR-431 influences in vivo lung development, morphology and function. Moving forward, the challenge will be to further delineate the mechanisms of miR-431, and to develop therapeutic strategies to selectively inhibit miR-431 or SMAD4 and enhance the BMP4/activin/TGF-β signaling pathway to effectively prevent or treat lung developmental diseases, particularly RDS.
Acknowledgements
Not applicable.
Funding
The present study was supported by the National Natural Science Foundation of China (grant no. 81601321) and the Jiangsu Science and Education Talents Program (grant no. QNRC2016092).
Availability of data and materials
The datasets used and/or analyzed during the current study are available from the corresponding author on reasonable request.
Authors’ contributions
YY, XYZ and XGZ conceived and designed the experiments of the current study. YQS, ZDB and JJP performed the experiments. YQS, ZDB, XNM and RC analyzed the data. YQS, YY and XYZ drafted the manuscript. ZDB revised the manuscript. All authors read and approved the final manuscript.
Ethics approval and consent to participate
Not applicable.
Patient consent for publication
Not applicable.
Competing interests
The authors declare that they have no competing interests.
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