Effect of DPP4/CD26 expression on SARS‑CoV‑2 susceptibility, immune response, adenosine (derivatives m62A and CD) regulations on patients with cancer and healthy individuals
- Authors:
- Published online on: February 16, 2023 https://doi.org/10.3892/ijo.2023.5489
- Article Number: 41
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Copyright: © Du et al. This is an open access article distributed under the terms of Creative Commons Attribution License.
Abstract
Introduction
Dipeptidyl peptidase 4 (DPP4; OMIM: 102720), also named CD26, intestinal adenosine deaminase complexing protein 2 (ADCP2), is a type II transmembrane glycoprotein (1-3). One of the lymphocyte membrane-bound proteins, DPP4 possesses serine protease activity. DPP4 is located on human chromosome 2q24.2 and encodes a protein composed of 766 amino acids with a predicted molecular weight of 88,279 Da (4). DPP4 is ubiquitously expressed in different cells, organs and body fluids. It participates in diverse physiological and pathological processes by mediating glucose metabolism (5,6), the endocrine and cardiovascular systems, cell adhesion, apoptosis, fibrosis, inflammation and immune function (1,2,7). These effects are achieved by forming homodimers for the enzymatic activity and/or protein-protein interactions. For example, DPP4 may interact with the S1 domain of the S-protein (spike glycoprotein) in severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) to cause coronavirus disease 19 (COVID-19) disease (8). Its binding to caveolin-1 and card-maguk protein 1 induces T-cell proliferation and NF-κB activation (9). Its interaction with adenosine deaminase (ADA) mediates epithelial and lymphocyte cell adhesion (10). Thus, DPP4 plays an important role in the development of immune-mediated disorders (7) and as a receptor of ADA in lymphocytes. Furthermore, it has been shown that DPP4 promotes metastases of types of cancer (11).
In 2003, Conarello et al (6) concluded that DPP4 inhibition is a viable therapeutic option for the treatment of metabolic diseases related to diabetes and obesity. DPP4 inhibitors, including hypoglycemic agents (e.g., sitagliptin, alogliptin and linagliptin), have been approved by the U.S. Food and Drug Administration (FDA) for the treatment of type 2 diabetes mellitus (12,13). In addition, clinical trials and preclinical studies have evaluated the efficacy and safety of DPP4 inhibitors in immune-mediated disorders and anti-cancer immune responses (14). It is thought that these inhibitors may act by regulating the balance of the T helper 1/2 (Th1/Th2) phenotype and production of cytokines (15,16). Over-expression of DPP4 in lung diseases may increase the susceptibility to viral invasion. Further evidence showed the role of DPP4 in the pathogenesis of lung disorders, including lung cancer; thus, DPP4 may be a therapeutic target in this setting (12).
DPP4 affects viral attacks in infectious respiratory disorders, including Middle East respiratory syndrome (MERS) (17,18) and non-infectious lung disorders, including lung cancer (19), chronic obstructive pulmonary disorder, pulmonary fibrosis and asthma (20,21). It has been shown that ADA competitively binds to DPP4, thereby preventing the binding of DPP4 with the MERS-CoV S1 domain. Thus, it is a potential agent for blocking viral attacks (22). During the COVID-19 pandemic, it was also shown that DPP4 is a vital marker/receptor that might play a significant role in disease progression (23,24) and susceptibility to COVID-19 (25). Decreased circulating DPP4 activity or expression is prognostic for severe outcomes of COVID-19 (23,26). High DPP4 levels and other receptors (such as CD147 and TMPRSS2) are correlated with the occurrence and severity of COVID-19 (27). Acute respiratory distress syndrome is a leading cause of mortality in patients with COVID-19. DPP4 inhibitors may be a novel therapeutic approach by decreasing the production of inflammatory factors, such as IL-6, IL-1β and TNF-α (28). Studies have documented a potential therapeutic effect of DPP4 inhibitors in patients with diabetes diagnosed with COVID-19 by reducing cytokine production (29-31). DPP4 inhibitors may reduce the mortality rate and improve outcomes of COVID-19 patients with or without type1 and type2 diabetes mellitus (32-37). Clinical trials of DPP4 inhibitors for COVID-19 are currently being performed (38). Several inhibitors of DPP4, such as alogliptin, linagliptin, sitagliptin, saxagliptin and vildagliptin, have been approved worldwide, including by the European Medicines Agency and the U.S. FDA (39). A new monoclonal antibody interacting with angiotensin converting enzyme 2 (ACE2) and DPP4 was recently developed; however, its use in patients has yet to be assessed (40).
Evidence indicates the effects of COVID-19 on the clinical outcome for patients with cancer; patients with cancer and plus COVID-19 are at a high risk of mortality (41-44). Therefore, patients with malignant cancer should be cautious during the COVID-19 pandemic. The correlation between DPP4 and malignancy is currently debatable and its role as a tumor suppressor or promoter of carcinogenesis needs to be determined. Moreover, the mechanisms underlying these processes are complex and warrant further clarification (45).
The present study conducted comprehensive and integrative analyses of DPP4 expression in healthy individuals and patients in the pan-cancer setting using genomic, transcriptomic and epigenomic data. The relationship between the expression of DPP4 and immune cell infiltration was analyzed. The results of analyses may reveal the susceptibility of different types of cancer to SARS-CoV-2 attack and the importance of AD/C-X-C motif chemokine ligand 3 (AD/CXCL3) signaling. By using N6, N6-dimethyladenosine (m62A), cordycepin (CD) and adenosine (AD) small molecules derived from natural products, the present study may also identify potential therapeutic agents for SARS-CoV-2.
Materials and methods
Online databases
In GenBank, DPP4 in humans is coded as follows: NP_001926.2 for protein and NM_001935.4 for the gene (https://www.ncbi.nlm.nih.gov/protein/NP_001926.2; https://www.ncbi.nlm.nih.gov/nuccore/NM_001935.4?report=genbank&log$=seqview) (46,47). Analysis of DPP4 expression in healthy and cancer tissues was performed using data from the Human Protein Atlas (HPA) (https://www.proteinatlas.org/ENSG00000197635-DPP4/tissue) (48,49). The DPP4 expression in different cancer tissues and matched healthy tissues, survival, isoforms, distribution and structure of the domain were analyzed through Gene Expression Profiling Interactive Analysis 2 (GEPIA2; http://gepia2.cancer-pku.cn/#analysis) (50,51). DNA methylation analysis of the DPP4 promoter in the pan-cancer setting was performed using the DNA methylation interactive visualization database (DNMIVD) (http://119.3.41.228/dnmivd/query_gene/?cancer=pancancer&gene=DPP4) (52). Mutation analysis for the DPP4 gene was performed through tumor genomics in cBioPortal (https://www.cbioportal.org/results/cancerTypesSummary?case_set_id=all&gene_list=DPP4&cancer_study_list=5c8a7d55e4b046111fee2296) (53). An integrated repository portal, called tumor-immune system interactions database (TISIDB), was utilized to analyze the relationship between the abundance of tumor-infiltrating lymphocytes (TILs) and DPP4 expression (http://cis.hku.hk/TISIDB/browse.php?gene=DPP4) (54).
Reagents, cell lines and breast cancer tissue collections
CD (cat no. B20196) was purchased from Must Bio-Technology Co. Ltd. AD (cat no. A6218) and m62A (cat no. N879945) were purchased from Macklin Biochemical Technology Co., Ltd. Dimethyl sulfoxide (DMSO; cat. no. D8148) was purchased from MilliporeSigma. The total RNA extraction kit (cat no. DP419), buffer RZ solution (cat no. RK145) and 2XTaq PCR Master Mix (cat no. KT211) were purchased from TransGen Biotech Co Ltd. The reverse transcription (RT) PCR kit (cat no. FSQ-201) was purchased from Toyobo Biotech Co., Ltd. Sodium dodecyl sulfate (SDS; cat. no. L5750) and β-actin antibodies (cat. no. A1978) were purchased from MilliporeSigma. The DPP4 antibody (cat. no. 67138S), mouse (cat. no. 7076S) and rabbit (cat. no. 7074S) secondary antibodies were purchased from Cell Signaling Technology, Inc. The lymphocyte activating 3 (LAG-3) polyclonal antibody (cat no. 16616-1-AP) was purchased from Wuhan Sanying Biotechnology. RPMI 1640 medium (cat no. C3010-0500) and Dulbecco's modified Eagle's medium (DMEM; cat no. C3113-0500) were purchased from Shanghai VivaCell Biosciences, Ltd. Fetal bovine serum (FBS; cat. no. A6907) was purchased from Invigentech. Phosphate buffered saline (PBS; cat no. P1010) was purchased from Beijing Solarbio Science & Technology Co., Ltd. The trypsin-ethylenediaminetetraacetic acid (Trypsin-EDTA) solution (cat no. C0201) and penicillin/streptomycin solution (cat no. C0222) were purchased from Beyotime Institute of Biotechnology. The lung cancer cell lines H1975 and A549, breast cancer cell line BT549 and prostate cancer cell lines PC3 and 22RV1 were purchased from the American Type Culture Collection.
A total of 11 paired of breast cancer tissues and the matched normal tissues from Chinese women were collected with informed consent (the affiliated hospital of Southwest Medical University; the date range was between January 2021 and September 2022). Total proteins were extracted for western blotting. All were invasive breast cancers with patients' age range 40-64. The present study was approved by the Ethical Committee of Southwest Medical University (approval no. 20221117-049).
Animals
All animal experiments were performed in strict accordance with international, national and institutional animal care guidelines. The present study was reviewed and approved by the Ethics Committee of Southwest Medical University, Sichuan, China (approval no. 20221117-049). A total of six BALB/c female mice (20 weeks old, ~24 g) of specific-pathogen-free were purchased from Chongqing Tengxin Biotechnology Co., Ltd. The mice were kept under constant temperature at 22°C, 50-60% humidity and a 12 h light/dark cycle (lights on from 7 a.m. to 7 p.m.) according to the feeding standard. All mice were healthy and pathogen-free, with free access to diet and water. After AD injection, the mice were observed every 12 h and showed no abnormalities. After 24 h, sodium pentobarbital (200 mg/kg body weight) was injected intraperitoneally to sacrifice the mice. Mortality was defined as no heartbeat following injection and dilated pupils. The whole mouse experiment was conducted for 14 days.
Isolation of mouse lymphocytes
The six BALB/c female mice were divided into the experimental and control groups (three mice per group). AD (0.006 mg/µl) solution (containing 20% DMSO, 30% polyethylene glycol 400, 5% Tween 80 and 63% NaCl) was injected into each mouse in the experimental group through the caudal vein for 24 h. Each mouse in the experimental group received an injection with 25 mg/kg AD. The mice were sacrificed and the spleens were isolated, ground and filtered using 100 µm cell strainers (cat no. 15-1100; Biologix Group Ltd.) in an ice bath. Each sample was collected in a 15 ml tube and centrifuged at 4°C, 400-600 g, 5 min. The supernatant was collected, sterile 1Xred blood cell lysis solution (150 mmol/l NH4Cl, 10 mmol/l KHCO3 and 0.1 mmol/l EDTA) (55) was added and the mixture was thoroughly mixed and placed on ice for 5-8 min. Following lysis, the reaction was terminated with sterile cold 1XPBS. The samples were centrifuged at 4°C, 400-600 g, 15 min, the debris was discarded and the supernatant was mixed with cold 1XPBS. Each sample was divided into two Eppendorf tubes for protein and RNA extraction.
Immunohistochemistry assay (IHC)
IHC was performed using formalin-fixed, paraffin-embedded sections of breast and lung cancer tissues obtained from Chinese patients was performed as previously described (47,56-60). DPP4 antibody (1:100 dilution) was used in IHC. Histopathological images were captured using a fluorescence microscope (cat no. DM2500; Leica Microsystems GmbH).
Cell culture
RPMI 1640 medium containing 10% FBS and 1% double antibiotics (penicillin-streptomycin) was used for H1975, A549, PC3 and 22RV1 cells; DMEM containing 10% FBS was used for BT549 and 293T-hACE2 cells (a gift from Professor Xianghui Fu of Sichuan University) (61). When the cell density reached ~50-70% or when the cells entered the logarithmic growth phase 24 h later, CD, AD, or m62A were added to the experimental group. Specifically, H1975 and BT549 cells were treated with CD, AD, or m62A at different concentrations (0, 10, 20 and 40 µM) for 24 h in a 12-well plate (57). All cells were cultured in an incubator at 37°C and 5% CO2.
Cell transfection and syncytia formation
Syncytia formation is a hallmark cellular event in SARS-CoV-2 infection (62). 293T-hACE2 cells were used to transfect the plasmid pCDH-CMV-HnCoV-S-EF1-copGFP. A six-well plate was used as an example, and the cell density was 40-50% for transfection. Lipofectamine® 3000 (cat no. L3000001; Invitrogen; Thermo Fisher Scientific Co., Ltd.) and P3000 were added to each 100 ng of plasmid at 0.3 µl. Then, two EP tubes were prepared in each well, labeled tube 1 and tube 2. Opti-MEM (cat no. 31985070; Thermo Fisher Scientific Co., Ltd.), P3000 and plasmid were added to tube 1, and Opti-MEM and Lipofectamine® 3000 (cat no. L3000001; Invitrogen; Thermo Fisher Scientific Co., Ltd.) were added to tube 2. The two tubes were mixed and left at room temperature for 5 min. After rinsing twice with 1 ml 1XPBS, 1 ml Opti-MEM was added to each well. The mixture of tube 1 and tube 2 was added to the corresponding wells and the mixture was shaken and mixed to make the mixture evenly cover the cells. The cells were placed into a constant temperature incubator at 37°C and 5% CO2 saturated humidity for another 6 h. After 6 h, the mixture in the 6-well plate was removed and 2 ml of fresh complete medium was added. Following continued culture for 18 h, the control group was without CD treatment, the experimental group was treated with 20 µM CD for 24 h. The syncytium formation of each group was observed and analyzed using a ZOE Fluorescent Cell Imager (Bio-Rad Laboratories, Inc.). The DPP4 protein and mRNA levels were also measured.
Western blotting
After treatment with CD, AD, or m62A, the cells were rinsed twice with ice-cold 1XPBS and lysed using ice-cold 1XEBC buffer (containing 20 mM Tris-HCl pH8.0, 125 mM NaCl, 2 mM EDTA, 0.5% NP-40 and protease inhibitors). Protein concentration was determined using Coomassie brilliant blue staining, diluted to the same concentration. An equal volume of loading buffer (2XSDS) was added to each sample for protein extraction. The samples with the mass of protein ~50 µg per lane were subjected to 10% SDS-polyacrylamide gel electrophoresis. Subsequently, proteins were transferred onto polyvinylidene difluoride membranes. The membranes were blocked with 1XPBST (1XPBS plus 0.05% Tween20) containing 5% skimmed milk for 1-2 h at room temperature, followed by addition of 2% skimmed milk solution. Next, the membranes were incubated with the primary anti-DPP4 antibody (1:2,000 dilution) overnight at 4°C and washed thrice with 1XPBST. Thereafter, the membranes were incubated with secondary antibody (1:2,000 dilution) at room temperature for 2-4 h on a decolorizing shaker and washed thrice with 1XPBST. Finally, the membranes were soaked in fresh SuperSignal West Pico Chemiluminescence Substrate (cat no. 34580; Thermo Fisher Scientific Inc.) and visualized using a gel imaging system (Bio-Rad Laboratories, Inc.). β-actin served as an internal control. The protocols for western blotting analysis of breast cancer tissues and matched healthy tissues obtained from Chinese patients has been previously described (56,57).
Cycloheximide (CHX) chase assays
Chase assay for DPP4 was performed with 20 µg/ml cycloheximide (CHX; cat no. HY-12320; Med Chem Express Technology Co., Ltd.) and AD using H1975 cells, as previously described (57). All experiments were performed in triplicate.
RNA extraction and RT
RNA extraction and cDNA synthesis were performed according to the manufacture's protocols. Cell treated with CD, AD, or m62A were rinsed twice with ice-cold 1XPBS buffer. Next, buffer RZ solution was added at a concentration of 10 cm2/ml for 5 min. Subsequently, the cells were lysed using an RNA extraction kit (cat no. DP419; Tiangen Biotech Co., Ltd.). The concentration and purity of the extracted total RNA were determined using a Nanodrop spectrophotometer (Thermo Fisher Scientific Inc.) at an optical density 260/280 nm of=1.8-2.0. RNA integrity evaluated through 1% agarose gel electrophoresis. Thereafter, the extracted RNA was reversely transcribed into cDNA with reverse transcriptase. Total RNA (1 µg) and 5XRT Master Mix (2 µl) were place in a tube and ddH2O was added to a total volume of 10 µl. The RT reaction was performed as follows: 37°C for 15 min; 50°C for 5 min; 98°C for 5 min; and maintenance at 4°C until use.
Semi-quantitative PCR
Each PCR tube (total volume: 10 µl) was placed in an ice bath and contained the following: 2XTaq PCR Master MIX (5 µl); primers (1 µl), cDNA (1 µl); and ddH2O (3 µl). Following thorough mixing and centrifugation, PCR was performed as follows: pre-denaturation at 95°C for 90 sec; denaturation at 95°C for 30 sec, annealing at 60°C for 30 sec, extension at 72°C for 30 sec; 32 cycles for DPP4 and 23 cycles for β actin (ACTB), final extension at 72°C for 5 min and maintenance at 16°C until use (63). The DPP4 primers used in semi-quantitative RT-PCR were RT-DPP4-L: 5′-caaattgaagcagccagaca-3′ and RT-DPP4-R: 5′-cagggctttg-gagatctgag-3′. The size of the PCR product for DPP4 was 354bp. The Lag-3 primers in mouse for semi-quantitative RT-PCR included RT-mLag-3-L: 5′-gccatctcgttctcgttctc-3′ and RT-mLag-3-R: 5′-tttttgatgctgctgacagg-3′. PCR product size was 335 bp for Lag-3. Of note, Actb served as an internal control. The Actb primers in mouse for semi-quantitative RT-PCR included RT-ACTB-mL: 5′-TGT TAC CAA CTG GGA CGA CA-3′ and RT-ACTB-mR: 5′-TCT CAG CTG TGG TGG TGA AG-3′. PCR product size was 392 bp for Actb. The ACTB primers in human semi-quantitative RT-PCR included RT-ACTB-5: 5′-CTC TTC CAG CCT TCC TTC CT-3′ and RT-ACTB-3: 5′-CAC CTT CAC CGT TCC AGT TT-3′. The expected product size was 510 bp. By using the nucleic acid dye GoldView (cat no. G8142; Beijing Solarbio Science & Technology Co., Ltd.), PCR products were verified with 1.5% agarose gel electrophoresis. PCR assays were performed in triplicate.
Statistical analysis
Clinical data from The Cancer Genome Atlas (TCGA) database (64) for cancers were used for overall survival (OS) analysis. The two group of patients according to the upper quartile expression of DPP4 were compared using Kaplan-Meier survival curves (https://kmplot.com/analysis/index.php?p=service). Experimental statistical analysis was performed for six values using independent samples t-test (two groups) for mouse experiments and calculated P-values, expressed as mean ± standard deviation. The mean grayscale values and fluorescence area of individual fluorescence images were measured using ImageJ software (National Institutes of Health). Spearman and Pearson were used to analyze the correlations between gene expression levels and promoter methylation levels in different tissues. All statistical analyses were performed using SPSS version 13.0 (SPSS, Inc.) and GraphPad Prism8 (Dotmatics) software. P<0.05 was considered to indicate a statistically significant difference.
Results
DPP4 expression in human healthy tissues
DPP4 mRNA expression is expressed in endocrine tissues, the gastrointestinal tract, female tissue (mainly in placenta), male tissue (mainly in prostate and seminal vesicle), proximal digestive tract, kidneys, bladder, liver, gallbladder and the respiratory system (Fig. 1A). DPP4 protein is expressed endocrine tissues, the gastrointestinal tract, female tissue (mainly in placenta), male tissue (mainly in prostate and seminal vesicle), proximal digestive tract, kidneys, bladder, liver, gallbladder, the respiratory system and the pancreas (Fig. 1A). Although the DPP4 mRNA levels were low [lung, 16.0 normalized transcripts per kilobase per million mapped reads (nTPM)], moderate expression of DPP4 protein was observed (Fig. 1A), demonstrating the role of DPP4 in viral invasion in the lungs/bronchus/nasopharynx. DPP4 mRNA levels were high in various cell types, including proximal enterocytes (glandular epithelial cells, 291.1 nTPM), syncytiotrophoblasts (trophoblast cells, 172.0 nTPM), cytotrophoblasts (trophoblast cells, 140.3 nTPM) and proximal tubular cells (squamous epithelial cells, 101.4 nTPM) (Fig. 1B).
The mRNA expression of DPP4 in immune cells was analyzed and three datasets are presented (Fig. 1C-E). In the HPA dataset, which includes 18 immune cell types and total peripheral blood mononuclear cells (PBMC), the results showed that DPP4 mRNA is mainly expressed in T cells [mucosal associated invariant T (MAIT) cells, 53.3 nPTM), natural killer cells (5.3 nPTM) and total PBMC (4.7 nPTM; Fig. 1C)]. In the Monaco dataset, which includes 29 immune cell types and total PBMC, the results indicated that DPP4 mRNA is mainly expressed in T cells (MAIT, 264.4 nPTM, memory CD4 T-cell Th1/Th17, 186.0 nPTM), dendritic cells (50.3 nPTM) and total PBMC (22.3 nPTM) (Fig. 1D). In the Schmiedel dataset, which includes 15 immune cell types, the results indicated that DPP4 mRNA is mainly expressed in T cells (memory CD4 T-cell Th1/Th17, 263.5 nPTM) (Fig. 1E). Collectively, these data demonstrated that DPP4 is highly expressed in T cells.
DPP4 expression in human tumor tissues from TCGA
The DPP4 RNA expression was high in tumor tissues, with the highest levels recorded for prostate cancer [50.1 fragments per kilobase per million mapped fragments (FPKM)], renal cancers (36.5 FPKM), including kidney chromophobe (KICH), kidney renal clear cell carcinoma (KIRC) and kidney renal papillary cell carcinoma (KIRP) and thyroid cancer (28.6 FPKM; Fig. 2A).
For protein expression, moderate-to-strong cytoplasmic or membranous positivity for the DPP4 antibody HPA068778 was mainly observed in renal, liver, stomach and prostate tissues; the highest levels were noted in thyroid, carcinoid, liver, prostate, renal and other types of cancer (Fig. 2B). A moderate-to-strong cytoplasmic and membranous positivity for the DPP4 antibody HPA071236 was observed in carcinoid, endometrial, prostate, thyroid, renal and liver tissues; the remaining cancers were essentially negative. The highest levels were observed in thyroid, carcinoid, prostate, liver, renal, endometrial and other types of cancer (Fig. 2C). As shown by the analysis using the DPP4 antibody CAB045970, several cases of prostate cancer and a few cases of renal cell carcinoma presented a moderate-to-strong membranous and/or cytoplasmic positivity, whereas the remaining types of cancer were negative. The highest in prostate cancer, thyroid, renal, carcinoid, endometrial and lung cancer (Fig. 2D). Thus, DPP4 protein is mainly expressed in thyroid, carcinoid, prostate, renal and liver cancer. The present study also conducted IHC using tissues obtained from patients with lung small cell carcinoma and breast cancer. The localization of DPP4 protein in lung small cell carcinoma and breast cancer is shown in Fig. 3. A moderate-to-strong cytoplasmic and membranous positivity was revealed, suggesting the involvement of DPP4 in viral invasion.
DPP4 expression and prognostic value in various tumor tissues and matched healthy tissues
Patients with cancer are vulnerable to SARS-CoV-2 infection and the combination of these conditions is associated with a high mortality rate (41-44). Therefore, it is important to identify differences in the expression levels of DPP4 between tumor tissues of various types of cancer and matched healthy tissues. The results of the GEPIA2 analysis revealed that the levels of DPP4 are upregulated in esophageal carcinoma (ESCA), KIRP, liver hepatocellular carcinoma (LIHC), lung adenocarcinoma (LUAD), pancreatic adenocarcinoma (PAAD), prostate adenocarcinoma (PRAD), stomach adenocarcinoma (STAD), thyroid carcinoma (THCA) and thymoma (THYM) compared with matched healthy tissues. However, they are downregulated in breast invasive carcinoma (BRCA), KICH, lung squamous cell carcinoma (LUSC) and skin cutaneous melanoma (SKCM; Fig. 4A-C). To verify these data, breast cancer samples with predicted downregulation of DPP4 were collected and western blotting was performed (Fig. 4D). The findings revealed that DPP4 protein levels were decreased in nine of 11 tumor tissues (81.8%) compared with the corresponding healthy tissues. This observation confirmed the results of the mRNA analysis from TCGA database for patients with BRCA.
Further investigation of the prognostic value of DPP4 demonstrated that higher expression levels were associated with a long OS in KIRC and mesothelioma (MESO) (Fig. 4E-F), implying that DPP4 could be a favorable marker. However, high expression was also linked to a short OS in bladder urothelial carcinoma (BLCA), lower grade glioma (LGG), LUSC, PRAD and UVM (Fig. 4G-K), suggesting that DPP4 could be an unfavorable marker.
DPP4 isoform expression, distribution and structure in different types of cancer
Various isoforms may play different roles in host susceptibility to SARS-CoV-2 invasion (65,66). Thus, analysis of the prevalence and structures of DPP4 isoforms in the pan-cancer setting was performed. According to the results, 11 isoforms exhibited different DPP4 expression levels (Fig. 5A). The expression of isoform ENST00000360534.7(DPP4-001) was high in all 33 types of cancer; nevertheless, the expression of other isoforms was very low or no detectable (Fig. 5A). Identical results were obtained regarding the utilization of isoforms (Fig. 5B). The genomic structures of DPP4 isoforms in 33 types of cancer are shown in Fig. 5C. The isoform DPP4-001 has 766 amino acids and includes the DPPIV_N domain and Peptidase_S9 domain. However, the DPP4-201 isoform has 118 amino acids and lacks functional domains. Information on the other nine isoforms is missing. These results indicated that ENST00000360534.7(DPP4-001) may be the functional isoform for tumorigenesis and SARS-CoV-2 entry in patients in the pan-cancer setting.
DNA methylation of the DPP4 promoter region may regulate DPP4 expression in some types of cancer
DNA methylation could be a mechanism underlying the regulation of DPP4 gene expression. Thus, the present study investigated the types of cancer in which DPP4 is regulated through DNA methylation. For the purpose, it analyzed data from the DNMIVD database to determine the degree of methylation of the DPP4 promoter and changes in expression in 23 different types of cancer. It was found that the mRNA levels of DPP4 were decreased in two types of cancer (BRCA and colon adenocarcinoma (COAD)) compared with matched healthy tissues; however DPP4 methylation levels were increased (Fig. 6A vs. B, E vs. F, respectively). The mRNA levels of DPP4 were increased in THCA samples and the promoter regions of DPP4 were decreased in cancer tissues compared with matched healthy tissues (Fig. 6I vs. J). Pearson and Spearman correlation analyses showed the inverse correlations between promoter methylation and DPP4 expression in BRCA, COAD and THCA compared with matched healthy tissues (Fig. 6C vs. D, G vs. H, K vs. L, respectively). However, P>0.05 in BRCA and COAD patients. Nevertheless, these results indicated that DNA methylation may be the mechanism regulating DPP4 expression in BRCA, COAD and THCA. Other mechanisms may be involved in the regulation of DPP4 expression in other types of cancer.
Altered DNA profiles of DPP4 in different types of cancer
It was recently reported that DPP4 gene polymorphisms are associated with clinicopathological characteristics in oral cancer (67). The DPP4 rs3788979 polymorphism may be associated with severe COVID-19 (68). The present study analyzed the DPP4 mutation profile in 32 different types of cancer to determine relationships with the development of malignancy, recurrence and therapeutic resistance. By analyzing DPP4 mutations, it was found that uterine corpus endometrial carcinoma (UCEC) has the highest frequency of mutations (8.32% of 529 cases), followed by SKCM (4.95% of 444 cases); KIRC has the lowest frequency of mutations (0.39% of 511 cases; Fig. 7A). Fig. 7B shows structural variations, mutations, amplifications and deep deletions with mutations being the dominant type of alteration (Fig. 7A and B). There were no DPP4 mutations found in the other seven types of cancer, which are presented in Fig. 7A. The detailed landscape included missense mutation, splicing, truncation and structural variation/fusion along the whole DPP4 gene, with missense mutation being the dominant type of alteration (Fig. 7C).
Association studies for DPP4 expression with tumor-immune systems in different types of cancer
The activity of DPP4 regulates numerous chemokines, cytokines and immunosuppressant/immunostimulants. DPP4 is also involved in cancer immunology (14). Immune system response plays indispensable roles in anti-viral and anti-cancer processes. Therefore, the present study conducted association studies to examine the relationship between DPP4 mRNA expression and the extent of immune infiltration in different types of cancer. Notably, it found correlations between DPP4 mRNA expression and immune lymphocytes (Fig. 8A), chemokines (Fig. 8B), receptors (Fig. 8C), immunosuppressants (Fig. 8D), immunostimulants (Fig. 8E) and major histocompatibility complex (MHC) molecules (Fig. 8F) in almost all types of cancer. These findings suggest therapeutic and preventive roles of DPP4 in cancer and SARS-CoV-2 invasion, respectively.
CD inhibits DPP4 expression in H1975, A549 and BT549 cancer cells
Small molecules or active substances derived from natural products can manipulate gene expression. The present study sought to determine whether these substances would target DPP4 expression. The effect of CD, a nucleoside derivative (adenosine derivative), on the expression of DPP4 was tested in a triple-negative breast cancer cell line (BT549) and two lung cancer cell lines (A549 and H1975). The results demonstrated that CD inhibited both DPP4 protein and mRNA expression in a dosage-dependent manner in H1975 (Fig. 9A and D), A549 (Fig. 9B and E) and BT549 (Fig. 9C and F) cells.
m62A inhibits DPP4 expression in H1975, A549 and BT549 cancer cells
The effect of m62A, another adenosine derivative, on DPP4 expression was also tested in BT549, A549 and H1975 cells. The results indicated that m62A also inhibited both DPP4 protein and mRNA expression in a dosage-dependent manner in H1975 (Fig. 9G and J), A549 (Fig. 9H and K) and BT549 (Fig. 9I and L) cells.
The findings of the present study suggested that both the adenosine derivatives CD and m62A may have potential therapeutic value as anti-SARS-CoV-2 molecules through inhibition of DPP4 expression in cancer.
AD inhibits DPP4 expression in H1975, A549, BT549 and other cancer cells
The effect of AD on DPP4 expression was also investigated in H1975, A549, BT549 and other cancer cells. The results indicated that AD also inhibited DPP4 protein expression in a dosage-dependent manner in H1975 (Fig. 10A), BT549 (Fig. 10B) and A549 (Fig. 10C) cells. Moreover, we found that AD inhibited DPP4 protein expression in a dosage-dependent manner in the PC3 (Fig. 10D) and 22RV1 (Fig. 10E) prostate cancer cell line. Surprisingly, unlike CD and m62A, AD did not induce significant changes in DPP4 mRNA expression in these cell lines, except 22RV1 (Fig. 10F-J, respectively). Nevertheless, these results suggest that AD itself might exert therapeutic effects as an anti-SARS-CoV-2 agent through inhibition of DPP4 expression in cancer.
Based on the lack of change in the mRNA levels, the present study sought to investigate whether protein stability affects DPP4 protein expression. Thus, western blotting analysis was performed after CHX treatment with or without AD in H1975 cells. The results are shown in Fig. 10K, while the quantitated protein levels are shown in Fig. 10L. Treatment with AD decreased the protein stability of DPP4 compared with control; the half-life of the protein was decreased from >12 h to ~4 h (Fig. 10K and L). These results indicate that treatment with AD could decrease the stability of DPP4 protein.
Role of AD in immune molecules and DPP4 expression associated genes
The TISIDB database analysis revealed that DPP4 regulates chemokines, cytokines and immunosuppressants/immunostimulants; the involvement of immune molecules from AD/A2AR signaling has been reported in the literature (69-72). The present study investigated which immune molecules are affected by AD and are associated with DPP4 expression. Cancer cell lines were treated with or without AD and semi-quantitative RT-PCR was conducted to examine the expression of 14 candidate genes (Table I). The results are shown in Fig. 11; AD downregulated the expression of LAG-3 in BT549, A549 and 22RV1 cells at both the mRNA (Fig. 11A) and protein (Fig. 11C) levels; however, it did not alter the levels of the other 13 genes (data not shown).
CD inhibits syncytial formation likely through DPP4
Evidence indicates that a large number of multinucleated cells characteristic of syncytial pathology are present in patients with COVID-19 (73). This is a pathological hallmark of SARS-CoV-2 infection. Syncytium formation is required for the participation of SARS-CoV-2 Spike protein and host cell having the human ACE2 gene (62). In the present study, after treatment with CD, 293T-hACE2 cells were transfected with SARS-CoV-2-Spike plasmids with GFP fluorescence. Numerous large syncytia with GFP green fluorescence were observed in control cells, indicating SARS-CoV-2 cell invasion (Fig. 12A; upper panels). Notably, treatment with CD significantly decreased the area of fluorescence of GFP-positive syncytia (Fig. 12A; bottom panels). The quantitative results are shown in Fig. 12B; treatment with CD significantly reduced the mean fluorescence area of syncytia compared with the control group. The present study also investigated whether treatment with CD reduced syncytia formation, at least partially, through DPP4. Western blotting revealed that the levels of DPP4 protein were significantly decreased in 293T-hACE2 cells following treatment with CD compared with control (Fig. 12C). As expected, CD inhibited DPP4 expression in 293T-hACE2 cells at both the protein and mRNA levels in a dosage-dependent manner (Fig. 12D and E). Thus, CD may inhibit the formation of syncytia through DPP4.
Discussion
The present study found that, in healthy tissues, DPP4 was mainly expressed in in endocrine tissues, the gastrointestinal tract, female tissue (mainly in placenta), male tissue (mainly in prostate and seminal vesicle), proximal digestive tract, kidneys, bladder, liver, gallbladder and the respiratory system. Although the DPP4 RNA levels were low (lung; 16.0 nTPM), the DPP4 protein expression was moderate, demonstrating its role in viral invasion in the lungs/bronchus/nasopharynx. Among 15 immune cell types, DPP4 mRNA was mainly expressed in T cells (memory CD4 T-cell Th1/Th17). Compared with matched healthy tissues, the levels of DPP4 were upregulated in ESCA, KIRP, LIHC, LUAD, PAAD, PRAD, STAD, THCA and THYM. In contrast, they were downregulated in BRCA, KICH, LUSC and SKCM. These findings indicated the roles of DPP4 in viral invasion in most types of cancer. Higher expression levels were associated with a long OS in KIRC and MESO, implying that DPP4 could be a favorable marker. However, high expression was also linked to a short OS in BLCA, LGG, LUSC, PRAD and UVM, suggesting that DPP4 could be an unfavorable marker. The isoform DPP4-001 includes both the DPPIV_N domain and Peptidase_S9 domain with 766 amino acids, indicating its function in tumorigenesis and SARS-CoV-2 invasion in patients with different types of cancer. DNA methylation in BRCA, COAD and THCA may be the mechanism regulating DPP4 expression. UCEC had the highest mutation frequency (8.32%), followed by SKCM (4.95%); KIRC had the lowest mutation frequency (0.39%). DPP4 expression in tumor-immune systems revealed correlations between DPP4 expression and immune lymphocytes, receptors, chemokines, immunosuppressants, immunostimulants and MHC molecules in almost all types of cancer. These results suggested a therapeutic role of DPP4 in cancer and SARS-CoV-2. The levels of soluble DPP4 (sDPP4) levels were increased in patients with acute and chronic viral infections; thus, the concentration of sDPP4 might be useful as a biomarker for these diseases (74). DPP4 inhibitors (e.g., gliptins) could be beneficial for patients with COVID-19, probably through interference with viral invasion (74) and activation of inflammatory pathways (75).
CD is a natural active substance derived from the traditional Chinese medicine fungus Cordyceps militaris, which possesses anticancer activity (76-78). m62A is a modified ribonucleoside in tRNA derived from Mycobacterium bovis Bacille Calmette-Guérin (79). CD and m62A are both derivatives of AD that suppress cathepsin L (CTSL) expression in cancer cells. CTSL is another receptor for SARS-CoV-2 (57). Additionally, CD suppresses the expression of other SARS-CoV-2 receptors (e.g., FURIN and transmembrane serine protease 2), in different cancer cells (47,80). Evidence indicates that a large number of multinucleated cells characteristic of syncytial pathology are present in patients with COVID-19 (73). This is a pathological hallmark of SARS-CoV-2 infection (62). Syncytium formation is required for the participation of SARS-CoV-2 Spike protein and host cell having human the ACE2 gene (62). The present study demonstrated that CD inhibits syncytia formation likely through DPP4. As expected, CD and m62A inhibit DPP4 expression in cancer cells, suggesting anti-SARS-CoV-2 and anti-cancer role through suppression of DPP4 expression.
AD is regarded as a mainly metabolic and immune checkpoint regulator in the tumor microenvironment, implicated in tumor escape from the host immune system (81). Targeting the AD pathway could be useful for cancer immunotherapy (82,83). Markedly, AD inhibited DPP4 expression in five types of cancer cells; this suggested its therapeutic potential as an anti-SARS-CoV-2 agent by inhibiting DPP4 expression in cancer.
LAG-3 belongs to a novel class of immune checkpoint receptors. It is highly expressed in TILs of various solid tumors, such as colon cancer, hepatocellular carcinoma, head and neck cancer, non-small cell lung cancer and pancreatic cancer. In pathological states, LAG-3 is highly expressed at the TILs surfaces, which positively correlates with the development and occurrence of cancer (84). Similar to programmed cell death protein 1 (PD-1) and cytotoxic T-lymphocyte antigen 4, LAG-3 is considered a vital next-generation immune checkpoint molecule (85). Numerous LAG-3 inhibitors have been reported in 108 clinical trials (https://clinicaltrials.gov/) (86). Encouragingly, the first anti-LAG-3 inhibitor (monoclonal antibody), relatlimab (also called BMS-986016), has been approved for clinical use by the U.S. FDA. Moreover, in March 2022, relatlimab in combination with nivolumab (PD-1 inhibitor) was approved by the U.S. FDA under the name opdualag. This is the first antibody approved for the treatment of adult and pediatric patients with unresectable or metastatic melanoma. This therapeutic regimen triggered synergistic immune responses to increase the progression-free survival and reduce the number of unresponsive patients. Nivolumab is an important anti-PD-1 antibody for the treatment of different types of cancer (87,88); it has been approved for clinical use in more than 65 countries, including the USA and China (87). By analyzing the predicted genes for both DPP4 regulation and AD/A2AR signaling (69-72), the present study showed that AD downregulated LAG-3 expression in cancer cell lines, thereby demonstrating the anti-cancer synergistic effects of DPP4 and AD regulation. However, further research is warranted to elucidate the mechanism underlying DPP4 regulation and SARS-CoV-2 infection.
The present study showed that CD can inhibit viral entry by pseudovirus-SARS-CoV-2 (Spike protein) experiments shown in Fig. 12. Mouse experiments involving AD treatments followed western blotting and RT-PCR, showed in Fig. 11B and D. The two may demonstrate the anti-SARS-CoV-2 or immune response. However, the present study does not have data to show directly anti-cancer effect in vitro and in vivo. This is a limitation which may be addressed in the near future.
In conclusion, the present study revealed the importance of DPP4 in different types of cancer, susceptibility to SARS-CoV-2 attack and possible DPP4/AD/LAG-3 signaling. These data also indicated potential immunotherapy options for SARS-CoV-2 by targeting DPP4 using small molecules derived from natural products, such as m62A, CD and AD. Further mechanism of DPP4 regulation and SARS-CoV-2 infection by these small molecules needs to be clarified in more detail.
Availability of data and materials
All data generated or analyzed during this study are included in this published article.
Authors' contributions
JD, JiF, WZ, LZ and JC performed experimental studies, data acquisition, data analysis and sample collection. JuF and HC designed the project and analyzed the data. JuF and TH and supervised the project. JuF wrote and edited the manuscript. JD and JuF confirm the authenticity of all the raw data. All authors read and approved the final manuscript.
Ethics approval and consent to participate
The present study was reviewed and approved by the Ethics Committee of Southwest Medical University, Sichuan, China (approval no. 20221117-049). Informed consent was obtained from patients for tissues samples.
Patient consent for publication
Not applicable
Competing interests
The authors declare that they have no competing interests.
Acknowledgments
The authors thank Dr Kai Wang and Mrs. Jiayue He from the Research Center for Preclinical Medicine, Southwest Medical University for their help in the syncytial formation experiment.
Funding
The present study was supported by the Foundation of Science and Technology Department of Sichuan Province (grant no. 2022NSFSC0737), the Joint Innovation Special Project of Science and Technology Plan of Sichuan Province (grant no. 2022YFS0623-C3), in part by the Research Foundation of Luzhou City (grant no. 2021-SYF-37) and the National Natural Science Foundation of China (grant nos. 81672887, 82073263).
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