Downregulation of microRNA‑33a promotes cyclin‑dependent kinase 6, cyclin D1 and PIM1 expression and gastric cancer cell proliferation
- Authors:
- Published online on: September 7, 2015 https://doi.org/10.3892/mmr.2015.4296
- Pages: 6491-6500
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Copyright: © Wang et al. This is an open access article distributed under the terms of Creative Commons Attribution License.
Abstract
Introduction
MicroRNAs (miRNAs/miRs) are non-coding, single-stranded RNAs of 21 to 23 nucleotides in length that post-transcriptionally regulate gene expression (1). miRNAs regulate the expression of an estimated 30% of all mRNAs in humans (1). To date, thousands of miRNAs have been identified in the human genome, and were found to have critical roles in a wide array of physiological and pathological processes (2). Of note, it has been revealed that the dysregulation of miRNAs is implicated in cancer (3–7). The miR-33 family, including miR-33a and miR-33b, are encoded within the intronic sequences of the Srebp genes in organisms (8–11). miR-33a is located in intron 16 of the Srebp-2 gene on chromosome 22 and miR-33b is present in intron 17 of the Srebp-1 gene on chromosome 17 (12). The miR-33 family were reported to be involved in the regulation and balancing of cholesterol metabolism, fatty acid oxidation and insulin signaling (12–15). Several recent studies reported that miR-33a was involved in several malignancies, including lung cancer (16), hepatocellular carcinoma (17), colon cancer (18), osteosarcoma (19) and supraglottic carcinoma (20). However, studies regarding miR-33a expression in various tumor types are controversial. Certain studies reported miR-33a to be upregulated in supraglottic (20) and intestinal-type gastric cancer tissues (21), while other studies showed that miR-33a was down-regulated in metastatic lung cancer (22). Contradictory results were also reported regarding the functions of miR-33a in cancer. While certain studies reported that miR-33a promoted tumorigenesis (23), cancer progression (18) and drug resistance (19), of human colon cancer, osteosarcoma and hematopoietic stem cells, others reported that miR-33a inhibited the proliferation (24,25), migration and invasion (16,22) of lung cancer and lymphoma. Gastric cancer is the fourth most common malignancy in the world and the second leading cause of cancer mortality. More than 70% of new cases and mortalities occur in developing countries, particularly in China (26). However, to the best of our knowledge, the roles of miR-33a in gastric cancer have not been studied. The expression and functions of miR-33a in gastric cancer, particularly in clinical specimens, have remained to be elucidated.
Although surgery is the most effective treatment for localized gastric cancer, ~50% of all patients have recurrences following curative resection. Even though traditional chemotherapy is effective in these cases, the prognosis of gastric cancer patients remains poor (27–29). Novel and effective molecular targets, such as miRNAs, for treating gastric cancer are therefore urgently required. The present study examined miR-33a expression in gastric cancer specimens and cell lines and investigated its correlation with clinicopathological factors as well as gastric cancer-associated antigens and gene expression. The effects of miR-33a overexpression on the proliferation and cell cycle progression of the SGC-7901 gastric cancer cell line as well as gene expression were assessed. A luciferase reporter assay was employed to identify direct target proteins of miR-33a. The present study indicated that miR-33a may be a biomarker and a molecular target for gastric cancer therapy.
Materials and methods
Reagents and apparatus
In the present study, the following reagents and apparatus were used: miRNeasy Mini kit (Qiagen, Valencia, CA, USA), a NanoDrop ND-1000 (NanoDrop Technologies, Wilmington, DE, USA), GoTaq® qPCR Master mix (Promega Corp., Madison, WI, USA), RevertAid First Strand RevertAid First Strand cDNA Synthesis kit (Thermo Fisher Scientific, Waltham, MA, USA), primers (shown in Table I; Invitrogen Life Technologies, Inc., Carlsbad, CA, USA), ABI 7500 thermocycler (Applied Biosystems, Thermo Fisher Scientific), miScript miR-33a mimic (Qiagen), miScript miR-33a inhibitor (Qiagen), AllStars Negative Control small interfering (si)RNA (Qiagen), miScript Inhibitor Negative control (Qiagen), HiperFect transfection reagent (Qiagen), Transwell inserts (pore size, 8 µm; Corning-Costar, Corning, NY, USA), Matrigel basement membrane matrix (BD Biosciences, Bedford, MA, USA), Giemsa (Sigma-Aldrich, St. Louis, MO, USA), pGL3 control vector (Promega Corp.), pRL-TK (Promega Corp.), Dual-Luciferase Reporter Assay system (Promega Corp), Protein bicinchoninic acid (BCA) Assay kit (Bio-Rad Laboratories Inc., Hercules, CA, USA), polyvinylidene difluoride membranes (Millipore, Billerica, MA, USA), anti-PIM1 (rabbit monoclonal, Abcam, Cambridge, MA, USA; cat. no. ab75776; 1:15,000), anti-p53 (rabbit monoclonal; Abcam; cat. no. ab179477; 1:3,000), anti-CDK6 (rabbit monoclonal; Abcam; cat. no. ab124821; 1:100,000), anti-CCND (rabbit monoclonal; Abcam; cat. no. ab16663; 1:200), anti-β-actin (rabbit polyclonal antibody, Santa Cruz Biotechnology, Inc., Dallas, TX, USA; cat. no. sc-130657; 1:500) and anti-rabbit IgG VHH Single Domain antibody (HRP) (Abcam; cat. no. ab191866; 1:5,000).
Cell culture and clinical specimen collection
The human gastric carcinoma cell lines MKN-28, SGC-7901, BGC-823 and HGC-27 and the gastric epithelial cell line GES-1 were provided by the Research Center of the Fourth Hospital of Hebei Medical University (Shijiazhuang, China), obtained from the Tumor Cell Bank of Chinese Academy of Medical Sciences (Beijing, China). Cells were cultured in 10-cm2 dishes (BD Biosciences, Franklin Lakes, NJ, USA) in Dulbecco's modified Eagle's medium or RPMI-1640 (Gibco Life Technologies, Carlsbad, CA, USA) and incubated at 37°C with humidified 5% CO2. The protocol for the collection of clinical specimens and the study protocol were approved by the Ethics Committee of Hebei Medical University (Shijiazhuang, China). All participants provided written informed consent. A total of 57 gastric carcinoma tissues and paired adjacent tissues were retrieved from surgical pathology files at the Forth Hospital of Hebei Medical University (Shijiazhuang, China). None of the patients had received pre-operative irradiation or chemotherapy. Information regarding age, gender, histological grade, differentiation status of adenocarcinoma, stage, tumor size/invasion depth (T), tumor embolus, degree of lymph node invasion (N) and distant metastasis (M) was retrieved from patient charts. The pre-treatment of the tissues was performed as previously described (30). Only sections containing a minimum of 90% carcinoma cells by examination with hematoxylin-eosin staining (Promega Corp.) were used for total RNA preparation (Fig. 1).
Total RNA isolation and reverse transcription quantitative polymerase chain reaction (RT-qPCR)
Total RNA, including miRNA, was isolated from frozen gastric carcinoma tissues, the paired adjacent tissues and cell lines using the miRNeasy Mini kit according to the manufacturer's instructions. RNA purity and concentration were confirmed by spectrophotometry using the NanoDrop ND-1000. RT-qPCR analysis was performed using the RevertAid First Strand cDNA Synthesis kit and the GoTaq® qPCR Master Mix according to the manufacturer's instructions in an ABI 7500 thermocycler. PCR primers are shown in Table I. The thermocycling conditions were as follows: 95°C for 2 min, 95°C for 15 sec for 40 cycles, 60°C for 1 min for 40 cycles, 95°C for 15 sec, 60°C for 15 sec and 95°C for 15 sec. The fold-change for each miRNA and mRNA, relative to U6 and 18S, were calculated using the 2−ΔΔCt method. Three independent RT-PCR reactions were performed.
Transfection of miScript miRNA mimic and inhibitor
SGC-7901 cells (1×105) were transfected with 5 nM miScript miR-33a mimic, 50 nM miScript miR-33a inhibitor, 5 nM AllStars Negative Control siRNA or 50 nM miScript Inhibitor Negative Control using a HiperFect transfection Reagent according to the manufacturer's instructions.
Cell proliferation assay
SGC-7901 cells transfected with miR-33a mimics (5 nM), inhibitor (50 nM) or Allstars negative control siRNA (50 nM) were seeded in 96-well plates at a density of 5×103 cells per well for the indicated time intervals. Cell proliferation was assessed using the Cell Counting Kit-8 (CCK-8; Dojindo, Kumamoto, Japan) as described previously (31).
Cell cycle analysis
SGC-7901 cells transfected with miR-33a mimics (5 nM), inhibitor (50 nM) or Allstars negative control siRNA (50 nM) were seeded in cell culture plates and incubated for 24, 48 and 72 h. At the end of the incubation, the cells were washed twice with ice-cold phosphate-buffered saline (PBS), fixed in 70% cold ethanol, treated with 100 µg/ml ribonuclease A (Roche Diagnostics, Basel, Switzerland) and labeled with 50 µg/ml propidium iodide (PI; Sigma-Aldrich) for 30 min at 37°C. The cells were analyzed using the FACScalibur™system (BD Biosciences) in conjunction with CellQuest software (BD Biosciences) (32).
Luciferase reporter assays
The 3′ untranslated regions (UTR) in the gene promoters of PIM1, P53, CDK6 and CCND1 were PCR-amplified from genomic DNA and inserted into the pMIR control vector using the SpeI and HindIII restriction sites. PCR primers used to amplify the PIM1, P53, CDK6 and CCND1 3′UTRs are listed in Table I. SGC-7901 cells were co-transfected with 2 µg firefly luciferase reporter vector and 0.5 µg control vector containing Renilla luciferase pRL-TK vector. For each group, 20 nM of the miR-33a mimic or AllStars Negative Control siRNA was used. Firefly and Renilla luciferase activities were measured consecutively using the dual luciferase system at 48 h after transfection.
Western blot analysis
Cell extracts were prepared and protein concentration in the lysates was measured using the Protein BCA Assay kit. Western blot analysis was performed as described previously (33). The antibodies used for western blotting were PIM1, P53, CDK6 and CCND1. An anti-β-actin antibody was used as a protein loading control. Primary antibodies were applied at 4°C overnight. The secondary antibody was incubated at room temperature for 1 h.
Statistical analysis
The expression levels of miRNAs from tissues were compared by using the Wilcoxon Signed Ranks test, the Mann-Whitney U test or the Kruskal-Wallis test. A Multiple linear regression analysis was performed to analyze the combined effects of clinicopathological features. The cell experimental data were analyzed by using the t-test. A P-value of less than 0.05 was considered to indicate a statistically significant difference. All analyses were performed using SPSS 13.0 software (SPSS, Inc., Chicago, IL, USA).
Results
miR-33a is downregulated in gastric cancer
To evaluate the expression of miR-33 family members in gastric cancer tissues, RT-qPCR was used to detect the expression levels in 57 pairs of tumor tissues and their matched adjacent tissues. In comparison with the adjacent tissues, miR-33a was downregulated in 75.4% (43/57) of the tumor samples. The expression of miR-33a in gastric cancer tissues was significantly lower than that in their matched adjacent tissues (Fig. 2A and B). While miR-33b was downregulated in 56.1% (32/57) of the tumor samples, its expression was not significantly different between gastric cancer tissues and normal adjacent tissues (data not shown). Similarly to the expression in cancer tissue specimens, miR-33a was reduced in the gastric cancer cell lines compared to that in the normal gastric cell line GES-1 (Fig. 2C).
miR-33a levels are inversely correlated with pathological differentiation and distant metastasis (M)
Next, the present study determined the potential clinicopathological implications of altered miR-33a expression in gastric cancer. All data of the patients who donated the tissue samples, including age, gender, pathological differentiation, tumor-nodes-metastasis (TNM) stage, tumor size/invasion depth (T), lymph node metastasis (N), M and venous invasion were obtained from clinical and pathological records. In the 57 patients with gastric cancer, miR-33a expression was associated with pathological differentiation, TNM stage, T and M, but not with age, gender, N and venous invasion (Table II and Fig. 3). To analyze the combined effects of pathological differentiation, T, N, M and venous invasion on miR-33a expression, a multiple linear regression analysis was performed using these clinicopathological features. The results showed that miR-33a expression was inversely correlated with pathological differentiation and M (Table III). In addition, the expression of miR-33a was negatively correlated with gastric cancer biomarker CA199 (Table IV). These results suggested that miR-33a had critical roles in the proliferation, invasion and metastasis of gastric cancer.
Table IICorrelation between the expression of microRNA-33a in gastric cancer specimens with clinicopathological features. |
Table IIICombined effects of pathological differentiation, T/N/M and venous invasion on microRNA-33a expression. |
Table IVCorrelation of the expression of microRNA-33a with the levels of antigens CA50, CEA, CA199 and CA724 in gastric cancer specimens. |
miR-33a inhibits cell proliferation and causes G1-phase arrest
To investigate the biological effects of miR-33a, the present study assessed the changes in cell proliferation, cell cycle of the gastric cancer cell line SGC-7901 transfected with vectors expressing miR-33a mimic or inhibitor. RT-qPCR analysis showed that the forced overexpression (Fig. 4A) and knockdown (Fig. 4B) of miR-33a were successful. Transfection of miR-33a mimic significantly inhibited the capacity of SGC-7901 cells to proliferate and arrested cells in G1 phase, while the transfection with miR-33a inhibitor significantly increased cell proliferation (Fig. 4B and C). In addition, the effects of miR-33a overexpression or knockdown on the migratory and invasive properties of SGC-7901 cells were assessed using Transwell and wound healing assays; however, no differences between transfected and control cells were observed (data no shown). miR-33a mimic significantly arrested cells in the G1 phase.
miR-33a directly targets CDK6, CCND1 and PIM1 in SGC-7901 gastric cancer cells
To reveal how miR-33a suppresses gastric cancer cell proliferation, Targetscan (http://www.targetscan.org/) and Miranda (http://www.microrna.org/) were used to identify miR-33a targets in human gastric cancers. Among these candidate target genes, cyclin-dependent kinase (CDK6), cyclin (CCN)D1, PIM1 and p53 were predicted to be miR-33a targets (Fig. 5A). CDK6 and CCND1 regulate cell cycle progression from G1 to S phase (34). Downregulation of CDK6 and CCND1 leads to cell cycle arrest in G1 phase (35). PIM1 is a positive regulator at the G2/M transition of the cell cycle (36) and mediates resistance to AKT inhibition (37). p53 as a tumor suppressor inhibits cell proliferation by inducing apoptosis and G1 arrest (38,39). To test the direct targeting of CDK6, CCND1, PIM1 and p53 by miR-33a, their complementary site sequences were inserted into plasmids downstream of a firefly luciferase reporter gene, which were then co-transfected into SGC-7901 cells together with miR-33a mimic or scrambled oligonucleotide. Compared to the scrambled oligonucleotide transfection, the co-transfection with miR-33a caused a marked reduction in the luciferase activity of the CDK6, CCND1 and PIM1 reporter constructs (Fig. 4B). Following transfection with miR-33a mimics, protein and mRNA levels of CDK6, CCND1 and PIM1 were significantly decreased, while they were significantly increased following miR-33a inhibition (P<0.01) (Fig. 5C and D). In the miR-33a mimics group, CCND1 and CDK6 were downregulated to a greater extent than PIM1. The above results may indicate that miR-33a inhibited gastric cancer cell proliferation via the downregulation of CDK6, CCND1 and PIM1.
PIM1 is upregulated in gastric cancer tissues
Since the present study showed that CDK6, CCND1 and PIM1 were targets of miR-33a, the expression of CDK6, CCND1 and PIM1 in gastric cancer tissues was evaluated. To verify the direct association of miR-33a with CDK6, CCND1 and PIM1 in gastric cancer, a correlation analysis was performed, revealing that the levels of miR-33a were negatively correlated to the expression of CDK6, CCND1 and PIM1 in gastric cancer specimens (Table V). In comparison with the adjacent tissues PIM1 was upregulated in 68.4% (39/57) of the tumor samples (Fig. 6A). Furthermore, CDK6 and CCND1 were upregulated in 45.6% (26/57) and 54.4% (31/57) of tumor tissues, respectively, compared with those in adjacent tissues (results not shown). Quantification of the results showed that expression of PIM1 but not CDK6 and CCND1 was significantly higher in gastric cancer tissues than that in their matched adjacent normal tissues (Fig. 6B). These results indicated that miR-33a most likely has a role in gastric cancer by targeting PIM1.
Table VSpearman correlation of miR-33a with the expression of CDK6, CCND1, PIM1and P53 in gastric cancer specimens (n=57). |
Discussion
It is widely known that the miR-33 family has a critical role in cholesterol metabolism, fatty acid oxidation and regulation of insulin signaling (12,17,40,41). An increasing number of studies reported that miR-33a participates in the initiation and progression of malignancies (16–20). However, previous results regarding miR-33a expression were contradictory (21,22). Numerous studies have demonstrated that miR-33a expression is dysregulated in various human cancer types (16–20). However, to the best of our knowledge, miR-33a has not been previously studied in gastric cancer. The present study reported that miR-33a expression in gastric cancer tissues was significantly lower than that in their adjacent tissues. Similarly, the expression of miR-33a was reduced in gastric cancer cell lines compared to that in a normal gastric cell line. In addition, the expression of miR-33a was inversely correlated with pathological differentiation and M. Furthermore, miR-33a expression was negatively correlated with cancer biomarker CA199, which is one of the most sensitive and relevant tumor biomarkers for gastric cancer. These results collectively indicated that miR-33a may be a critical factor of proliferation, migration and invasion, as well as a potential therapeutic target for the inhibition of these processes in gastric cancer. Furthermore, similarly to CA199, miR-33a may be a useful predictive biomarker of gastric cancer.
Previous studies regarding the function of miR-33a in cancer have reported conflicting results. A recent study reported that miR-33a was upregulated in human colon cancer stem cells (SW1116csc) (18). miR-33a induced tumorigenesis by decreasing p53-mediated apoptosis (23). In addition, a recent study indicated that miR-33a promoted osteosarcoma-cell resistance to cisplatin by downregulating TWIST (19). By contrast, a few studies demonstrated that miR-33a functioned as tumor-suppressor to inhibit metastasis (16,22) and proliferation (24,25,42) in numerous cancer types. These findings indicated that the function of miR-33a in cancer is not universal and that it may be cell type-specific. The present study further investigated the roles of miR-33a in gastric cancer, indicating that miR-33a inhibited the proliferation of SGC-7901 gastric cancer cells due to causing cell cycle arrest in G1 phase.
miRNAs have roles of post-transcriptional regulation by inhibiting the expression of their target genes. miR-33a regulates cholesterol levels by targeting Abca1, Abcg1 and Npc1 (9–11) as well as fatty acid metabolism by targeting Ampk, Cpt1a, Crot, Hadhb and Sirt6 (8,12). However, various studies reported a diversity of miR-33a target genes involved in cancer. For instance, p53 was reported as one of the target genes of miR-33a (23). Another study reported that PIM1 was one of the target genes of miR-33a, but not p53 or CDK6 (25). A further study showed that CDK6 and CCND1 were the target genes of miR-33a (24). In the present study, Luciferase reporter assays showed that in SGC-7901 cells, miR-33a directly targeted CDK6, CCND1 and PIM1, but not p53. These results suggested that the effect of miR-33 on target genes and cancer cell viability may be cell type-specific. In SGC-7901 cells overexpressing miR-33a, mRNA and protein levels of CDK6 and CCND1 were decreased to a greater extent than PIM1, which may be the reason for the observed cell cycle arrest in G1 phase, but not in G2 phase. To confirm this pathway in gastric cancer patients, the expression of CDK6, CCND1 and PIM1 was assessed in gastric cancer specimens, showing that miR-33a expression was negatively correlated to CDK6, CCND1 and PIM1. The expression levels of PIM1, but not those of CDK6 and CCND1, were significantly higher in gastric cancer tissues than those in their matched adjacent tissues. As to the differences between the results for cells and clinical specimens, additional mechanisms to the miR-33a/CDK6/CCND1 pathway, possibly associated with the tumor microenvironment, may have been involved in tumors from patients with gastric cancer, which require to be further investigated. A previous study reported that transforming growth factor (TGF)-β inhibited the expression of CDK6 (43), and our group also identified that TGF-β was upregulated in gastric cancer tissues (data not shown). The results of the present study proved that miR-33a exerted its effects by directly interacting with CDK6, CCND1 and PIM1 in gastric cancer cells and mostly through PIM1 in gastric cancer patients.
In conclusion, the present study showed that miR-33a inhibits the proliferation of gastric cancer cells by directly targeting CDK6, CCND1 and PIM1. Analysis of tumor samples from gastric cancer patients showed that the miR-33a/PIM1 interaction was the most clinically relevant pathway involved. miR-33a may be utilized as a valuable biomarker for gastric cancer and may resemble a potent therapeutic target.
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