Knockdown of homeobox A5 by small hairpin RNA inhibits proliferation and enhances cytarabine chemosensitivity of acute myeloid leukemia cells

  • Authors:
    • Na Li
    • Xiuhong Jia
    • Jianyong Wang
    • Youjie Li
    • Shuyang Xie
  • View Affiliations

  • Published online on: September 15, 2015     https://doi.org/10.3892/mmr.2015.4331
  • Pages: 6861-6866
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Abstract

Homeobox genes encode transcription factors that are essential for embryonic morphogenesis and differentiation. Transcription factors containing the highly conserved homeobox motif show considerable promise as potential regulators of hematopoietic maturation events. Previous studies have suggested that the increased expression levels of homeobox (HOX)A genes was correlated with the cytogenetic findings associated with poor prognosis in acute myeloid leukemia and mixed lineage leukemia. The aim of the present study was to investigate the role of HOXA5 in leukemia. The U937 human leukemia cell line was transfected with a HOXA5‑targeted short hairpin RNA (shRNA) to determine the effects of downregulation of the HOXA5 on proliferation, apoptosis, cell cycle distribution and chemoresistance in leukemia cells. Reverse transcription‑quantitative polymerase chain reaction and western blot analyses demonstrated that the mRNA and protein expression levels of HOXA5 were markedly suppressed following transfection with an shRNA‑containing vector. Knockdown of HOXA5 significantly inhibited cell proliferation, as determined by Cell Counting kit‑8 assay. Flow cytometry revealed that reduced HOXA5 expression levels resulted in cell cycle arrest at the G1 phase, and induced apoptosis. In addition, western blot analysis demonstrated that HOXA5 knockdown increased the expression levels of caspase‑3, and reduced the expression levels of survivin in the U937 cells. Furthermore, knockdown of HOXA5 in the U937 cells enhanced their chemosensitivity to cytarabine. The results of the present study suggested that downregulation of HOXA5 by shRNA may trigger apoptosis and overcome drug resistance in leukemia cells. Therefore, HOXA5 may serve as a potential target for developing novel therapeutic strategies for leukemia.

Introduction

Acute myeloid leukemia (AML) is a hematopoietic stem cell disorder characterized by the clonal proliferation of myeloid precursors with inhibition of differentiation, leading to the accumulation of immature cells at various stages and reduction in the production of normal hematopoietic components: Erythrocytes, platelets and mature granulocytes (1). AML is the most common lethal hematological malignancy in children and young adults, and represents 3% of all cancer cases, and accounts for ~257,000 cases of cancer-associated mortality worldwide annually (2). With conventional intensive chemotherapy, the prognosis for patients with AML remains poor, with an overall long-term survival of <30% in patients younger than 60 years old, and only 10–20% for older patients (3). Previous studies have demonstrated that therapeutic strategies targeting tumor cell growth and survival signaling pathways may provide a novel strategy to optimize AML therapy (46). Although numerous molecules have been identified as potential targets, only a few have a pivotal role in tumor cell proliferation and survival (7). Therefore, the identification of novel therapeutic targets and the development of novel therapeutic strategies that may effectively regulate cellular function appear to be of central importance.

Homeobox (HOX) genes comprise a large family of homeodomain-containing transcription factors, present in four separate clusters (A–D), which are key regulators of embryonic development, hematopoietic differentiation and leukemogenesis (8). Previous studies demonstrated that increased HOXA9 and Meis homeobox 1 expression were strongly associated with cytogenetically normal-AML (9,10). HOXA5 is a member of the HOX gene family, which is known to have important roles in embryonic development and in the regulation of the differentiation process of adult cells. In addition, HOXA5 has been implicated in the differentiation of epithelial and hematopoietic cells (11). Overexpression of HOXA5 in hematopoietic progenitors results in increased granulocytic/monocytic differentiation, but reduced erythroid/megakaryocytic differentiation, which suggests that HOXA5 functions as an important regulator of hematopoietic lineage determination and maturation (12).

Studies of homeobox genes in leukemic cells provided evidence that aberrant expression may have an important role during leukemogenesis (13,14). However, whether HOXA5 regulates the proliferation and apoptosis of leukemia cells, as well as the nature of the underlying mechanism, remain unknown. The aim of the present study was to investigate the potential role of HOXA5 in the development of leukemia.

Materials and methods

Cell culture

Human U937 AML cells were purchased from the Shanghai Institutes for Biological Sciences of the Chinese Academy of Sciences (Shanghai, China) and cultured in RPMI-1640 medium (GE Healthcare Life Sciences, Logan, UT, USA) supplemented with 15% fetal bovine serum (GE Healthcare Life Sciences) and 1% antibiotics (100 IU/ml penicillin and 100 µg/ml streptomycin; GE Healthcare Life Sciences), at 37°C in a humidified atmosphere containing 5% CO2.

GFP assays

Following transfection, GFP expression in U937 cells was observed under a fluorescent microscope (Olympus DP71; Olympus, Tokyo, Japan) and then the percentage of GFP-positive cells was estimated by flow cytometry (FACS FC500; Beckman Coulter, Brea CA, USA).

In vitro transfection with shRNA

Three pairs of shRNA sequences targeting HOXA5, termed HOXA5 shRNA-1, -2, -3, and one scramble sequence that served as a control were designed and synthesized by Shanghai GenePharma Co., Ltd. (Shanghai, China). Their target sequences are shown in Table I. The U937 cells in logarithmic growth phase were seeded into a six-well plate at a density of 5×105 cells/well and transfected using HiPerFect (Qiagen, Inc., Valencia, CA, USA) according to the manufacturer's instructions. After 48 h, transfection efficiency was examined under the fluorescence microscope. Reverse transcription-quantitative polymerase chain reaction (RT-qPCR) and western blot analyses were performed to determine inhibitory efficacy.

Table I

Candidate HOXA5 shRNAs and their target sequences.

Table I

Candidate HOXA5 shRNAs and their target sequences.

RecombinantTarget sequence (5′-3′)
HOXA5 shRNA-1 GGACTACCAGTTGCATAATTA
HOXA5 shRNA-2 GCTTTCTGTTCATCTCTTTGT
HOXA5 shRNA-3 GCAGAAGGAGGATTGAAATAG

[i] HOXA5, homeobox A5; shRNA, short hairpin RNA.

RT-qPCR

Total RNA was isolated using TRIzol® reagent (Invitrogen Life Technologies, Carlsbad, CA, USA), according to the manufacturer's instructions. A total of 2 µg total RNA was reverse transcribed into cDNA. The reverse transcription reaction was performed using a PrimeScript™ RT reagent kit with gDNA Eraser (Takara Biotechnology Co., Ltd., Otsu, Japan) and RT-qPCR was performed using a SYBR Green reaction kit (Takara Biotechnology Co., Ltd.) on an ABI PRISM 7500 real-time PCR system (Applied Biosystems, Foster City, CA, USA). The reaction system of the PCR was composed of SYBR green reagent, forward primer, reverse primer, template cDNA and nuclease-free distilled water. The PCR conditions were as follows: 95°C for 30 sec, 40 cycles of 95°C for 5 sec, and 60°C for 34 sec. The PCR primer sequences for the RT-qPCR were as follows: Forward: 5′-TGCACCACCACCTGCTTAGC-3′ and reverse: 5′-GGCATGGACTGTGGTCATGAG-3′ for human GAPDH; and forward: 5′-AGCCACAAATCAAGGACACA-3′ and reverse: 5′-GCTCGCTCACGGAACTATG-3′ for HOXA5. qPCR for each gene of each cDNA sample was assayed in triplicate. The results were calculated using the 2−∆∆Ct method using the following equations: ΔCt = Ct(target gene) − Ct(actin); ΔΔCt = ΔCt(HOXA5 shRNA-treated cells) − ΔCt(untreated control).

Western blot analysis

The cells were washed twice with cold phosphate-buffered saline (PBS) and harvested in 100 µl cell lysis buffer (Nanjing KeyGEN Biotech Co., Ltd., Nanjing, China) containing protease inhibitors (Nanjing KeyGEN Biotech Co., Ltd.). A total of 50 µg extracted proteins were separated on 10% SDS-PAGE (Beyotime Institute of Biotechnology, Shanghai, China), and then transferred electrophoretically onto a poly-vinylidene difluoride membrane (EMD Millipore, Bedford, MA, USA). The membranes were blocked with 5% skimmed milk for 2 h at room temperature, and washed three times with Tris-buffered saline with Tween-20 [TBST; 50 mM Tris-HCl (pH 7.6), 150 mM NaCl, 0.1% Tween-20], and then incubated overnight at 4°C with specific antibodies. The primary antibodies used were as follows: Rabbit monoclonal anti-HOXA5 (ImmunoWay Biotechnology, Newark, DE, USA; 1:1,000 dilution; cat. no. YT2211), rabbit polyclonal anti-survivin (Wuhan Boster Biological Technology, Ltd., Wuhan, China; 1:300 dilution; cat. no. BA4055-2), rabbit polyclonal anti-caspase-3 (Wuhan Boster Biological Technology, Ltd.; 1:300 dilution; cat. no. BA2885-2) antibodies, and rabbit polyclonal anti-β-actin (Beyotime Institute of Biotechnology, Haimen, China; 1:1000 dilution; cat. no. BA2305) antibody was used as a loading control. The following day, after washing with TBST, the membrane was incubated in horseradish peroxidase-labeled goat anti-rabbit immunoglobulin G (1:5,000; cat. no. ZB-5301; OriGene Technologies, Beijing, China) for 1 h at room temperature. Finally, images were captured using a FluorChem FC2 gel imaging system (Alpha Innotech, San Leandro, CA, USA).

Cell proliferation assay

Cell proliferation was determined using a Cell Counting kit-8 (CCK-8) assay (Dojindo Molecular Technologies, Inc., Kumamoto, Japan). The cells were plated at a density of 1–2×104 cells/well in 96-well culture plates. Following treatment, 10 µl CCK-8 solution was added to each well and incubated for 1–4 h. The absorbance was then measured at 450 nm using an ELISA reader (F-7000; Hitachi High-Technologies Corporation, Tokyo, Japan).

Cell cycle analysis

Cell cycle analysis was conducted using a Cell Cycle Detection kit (Nanjing KeyGEN Biotech Co., Ltd.) following the manufacturer's instructions 48 h post-transfection. Briefly, the cells were collected and fixed with 70% cold ethanol at 4°C overnight. The DNA was stained with RNase and propidium iodide (PI) for 30 min at room temperature, and then analyzed by flow cytometry (FACS FC500; Beckman Coulter).

Cell apoptosis analysis

A total of 1×105 cells were collected 48 h post-transfection, washed twice with PBS, and then resuspended in binding buffer (Nanjing KeyGEN Biotech Co., Ltd.). Cell suspension was stained with Annexin V-fluorescein isothiocyanate and PI (Nanjing KeyGEN Biotech Co., Ltd.) for 5–15 min at room temperature, and analyzed by flow cytometry.

Statistical analysis

The data are expressed as the mean ± standard deviation. The results were evaluated by one-way analysis of variance using SPSS 16.0 software (SPSS, Inc., Chicago, IL, USA). P<0.05 was considered to indicate a statistically significant result.

Results

Efficacy of shRNA vectors in decreasing HOXA5 expression in U937 cells

A green fluorescent protein (GFP)-containing vector, pGPH1, was used to knock down HOXA5. Post-transfection, >70% of cells were GFP-positive, indicating high transfection efficiency (Fig. 1). To evaluate the effects of shRNAs on gene silencing, three HOXA5 shRNAs targeting the HOXA5 gene (HOXA5 shRNA-1, 2 and 3) were investigated in U937 cells by RT-qPCR and western blotting, with U937 cells alone serving as a control. HOXA5 shRNA-3 was determined to be the most effective compared with the other shRNAs. shRNA-3 induced a marked downregulation of HOXA5 transcript in U937 cells after 48 h (Fig. 2A and B; P<0.05). RT-qPCR analysis revealed that HOXA5 mRNA expression levels in the U937 cells transfected with HOXA5 shRNA-3 decreased by ~70%, compared with those of the untransfected U937 cells, whereas the control shRNA had no influence on HOXA5 mRNA expression levels in the U937 cells (Fig. 2C; P<0.05). Western blot analysis also showed a significant decrease in HOXA5 expression in the U937 cell lines (Fig. 2D; P<0.05).

Knockdown of HOXA5 expression inhibits cell proliferation as determined by a CCK-8 assay

To determine whether downregulation of HOXA5 affected cell growth in vitro, the levels of cell proliferation were assessed following HOXA5 RNAi by CCK-8 assay, and the results are shown in Fig. 3. After 0, 24, 48 and 72 h transfection, the growth of HOXA5 shRNA-3 transfected cells decreased compared with cells transfected with control shRNA and parental U937 (P<0.05), suggesting that transfection with HOXA5 shRNA-3 inhibited cell proliferation.

Knockdown of HOXA5 expression induces cell cycle G1 phase arrest in U937 cells in vitro

To evaluate the effects of HOXA5 knockdown on cell cycle distribution in U937 cells, DNA content was measured by flow cytometry in HOXA5 shRNA-3 transfected cells and control cells. As shown in Fig. 4A, 48 h post-transfection, interference of HOXA5 expression led to cell cycle arrest in the G1 phase, compared with the controls (P<0.05). In addition, the increase in the G1 phase cell population was accompanied by a concomitant decrease in cells in the S phase in the U937 cell lines with HOXA5 knockdown (P<0.05), without any observable changes in the cell population in the G2 phase. These data suggest that the induction of G1 phase arrest accounts for the inhibitory effects of HOXA5 knockdown on U937 cell growth.

Knockdown of HOXA5 induces U937 cell apoptosis

The effects of HOXA5 knockdown on cell apoptosis were also investigated using flow cytometric analysis. Apoptotic rates were significantly higher in HOXA5 shRNA-3-transfected U937 cells. As shown in Fig. 4B, U937 cells transfected with HOXA5 shRNA-3 underwent increased apoptosis, compared with control shRNA and parental U937 cells. Furthermore, western blot analysis demonstrated that compared with control cells, the protein expression levels of survivin were significantly reduced, whereas the expression levels of caspase-3 were significantly increased in HOXA5 shRNA-3-transfected U937 cells (Fig. 4C; P<0.05). These results suggest that inhibition of cell growth by HOXA5 shRNA-3 induces cell death in U937 cells via apoptotic events.

Knockdown of HOXA5 increases the sensitivity of U937 cells to cytarabine

To assess whether downregulation of HOXA5 was able to enhance the sensitivity of leukemic cells to cytarabine, a common antitumor drug used in the treatment of AML, 48 h post-transfection HOXA5 shRNA-3-transfected cells, control shRNA-transfected cells, and parental U937 cells were incubated with cytarabine for 24 h, and cell proliferation inhibition was determined by a CCK-8 assay. As shown in Fig. 5A, compared with the controls, HOXA5 shRNA-3 exhibited significantly higher inhibitory levels on cell proliferation, indicating enhanced sensitivity to cytarabine (P<0.05). Furthermore, the present study investigated whether knockdown of HOXA5 was able to enhance cytarabine-induced cell apoptosis. HOXA5 shRNA-3 transfection combined with cytarabine resulted in a significant increase in apoptotic cell death, compared with cytarabine or HOXA5 shRNA-3 alone (Fig. 5B; P<0.05), suggesting that HOXA5 knockdown was able to enhance the sensitivity of U937 cells to cytarabine.

Discussion

Deregulation of HOX genes influences tumorigenesis and cancer cell biology via differentiation, apoptosis, receptor signaling and other unknown mechanisms (15,16). Aberrant expression of Hox has been observed in various types of cancer, such as hematologic malignancies, breast carcinoma, prostate cancer and lung cancer (1721). Previous studies have suggested that overexpression of individual HOXA genes alone or in combination with MEIS1 results in leukemia (2224). HOXA5 is a member of the HOX gene family and its overexpression in hematopoietic progenitor cells results in increased granulocytic/monocytic differentiation, but reduced erythroid/megakaryocytic differentiation (9). HOXA5 is critical for leukemic transformation in CALM-AF10-mediated leukemia, and is overexpressed in numerous leukemia cell lines (25,26). These results suggested that HOXA5 is an important regulator of hematopoietic lineage determination and maturation. Therefore, the present study was designed to investigate the cellular functions of HOXA5, in order to elucidate the mechanism underlying its contribution to leukemia.

The present study used shRNA to reduce the expression of HOXA5 in human U937 leukemia cell lines. The selected shRNA-containing vector efficiently suppressed HOXA5 expression at the mRNA and protein levels. The effect of HOXA5 knockdown on the cellular functions of U937 cells was subsequently explored. Cell proliferation of U937 cells transfected with HOXA5 shRNA-3 also indicated that the cell growth of U937 cells decreased significantly compared with control cells. Cell cycle analysis demonstrated that the percentage of cells in the G1 phase was markedly increased, and those in the S phase was markedly decreased in HOXA5 shRNA-3-transfected U937 cells. These results suggested that knockdown of the HOXA5 gene was able to arrest cell cycle progression, and inhibit cell proliferation. A flow cytometric apoptosis assay demonstrated that HOXA5-specific shRNA treatment resulted in a significant increase in the percentage of cell apoptosis.

Apoptosis is regulated by a balance of pro-apoptotic and anti-apoptotic genes, in which multiple genes and signaling pathways are implicated. Abnormal expression and functional changes of these genes are closely associated with tumorogenesis. Survivin is a member of the inhibitor of apoptosis family. The survivin protein is able to inhibit caspase activation via intrinsic and extrinsic signaling pathways, thereby leading to negative regulation of apoptosis or programmed cell death (27). These results have been demonstrated by the disruption of survivin induction signaling pathways leading to increased levels of apoptosis and a decrease in tumor growth (2832). Caspase-3 is an important enzyme in apoptosis and the executor of apoptosis. The two signaling pathways of cellular apoptosis, the intrinsic and extrinsic signaling pathways, converge at caspase-3 to activate other caspases leading to a proteolytic cascade and eventually apoptotic morphology. Western blot analysis demonstrated that transfection with HOXA5-targeted shRNA significantly decreased the expression levels of survivin, and elevated the expression levels of caspase-3 compared with the controls, implying a role for HOXA5 as a regulator of the expression of apoptosis-associated molecules.

Cytarabine is a DNA polymerase inhibitor widely used for the treatment of several types of malignancies, including leukemia. The present study demonstrated that HOXA5 knockdown significantly enhances the cytotoxicity of cytarabine, and the combination of cytarabine and HOXA5-targeted shRNA exerts greater antiproliferative effects compared with cytarabine treatment alone, demonstrating the role of HOXA5 in the chemoresistance of U937 cells. Therefore, these results suggested that suppression of HOXA5 by shRNA may sensitize leukemic cells to cytarabine. These findings highlight the potential of combining conventional chemotherapeutics with gene therapy as an attractive therapeutic strategy for leukemia.

In conclusion, the results of the present study demonstrated that HOXA5 knockdown with shRNA in U937 human leukemia cells exerted antiproliferative effects, induced apoptosis and cell cycle arrest, and enhanced the cytotoxicity of cytarabine. These findings suggested that the shRNA-silencing of HOXA5 may be considered as a promising therapeutic target for leukemia, and may be used with conventional chemotherapeutics to increase therapeutic efficacy.

Acknowledgments

The authors of the present study would like to thank Dr Xie Shuyang and Dr Li Youjie for their technical assistance. The present study was supported by funding from the NCET-10-0919 'Taishan Scholar' position of the National Natural Science Foundation (grant nos. 31371321 and 81200601); the Shandong Science and Technology Committee (grant no. 2010GSF10264); and the Foundation of Shandong Educational Committee of China (grant nos. J10LC60 and J11LC01).

Abbreviations:

AML

acute myeloid leukemia

CCK-8

cell counting kit-8

GFP

green fluorescent protein

CN-AML

cytogenetically normal acute myeloid leukemia

PBS

phosphate-buffered saline

RT-qPCR

reverse transcription-quantitative polymerase chain reaction

SDS-PAGE

sodium dodecyl sulphate-polyacrylamide gel electrophoresis

shRNA

short hairpin RNA

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Spandidos Publications style
Li N, Jia X, Wang J, Li Y and Xie S: Knockdown of homeobox A5 by small hairpin RNA inhibits proliferation and enhances cytarabine chemosensitivity of acute myeloid leukemia cells. Mol Med Rep 12: 6861-6866, 2015.
APA
Li, N., Jia, X., Wang, J., Li, Y., & Xie, S. (2015). Knockdown of homeobox A5 by small hairpin RNA inhibits proliferation and enhances cytarabine chemosensitivity of acute myeloid leukemia cells. Molecular Medicine Reports, 12, 6861-6866. https://doi.org/10.3892/mmr.2015.4331
MLA
Li, N., Jia, X., Wang, J., Li, Y., Xie, S."Knockdown of homeobox A5 by small hairpin RNA inhibits proliferation and enhances cytarabine chemosensitivity of acute myeloid leukemia cells". Molecular Medicine Reports 12.5 (2015): 6861-6866.
Chicago
Li, N., Jia, X., Wang, J., Li, Y., Xie, S."Knockdown of homeobox A5 by small hairpin RNA inhibits proliferation and enhances cytarabine chemosensitivity of acute myeloid leukemia cells". Molecular Medicine Reports 12, no. 5 (2015): 6861-6866. https://doi.org/10.3892/mmr.2015.4331