Knockdown of AMPKα2 impairs epithelial‑mesenchymal transition in rat renal tubular epithelial cells by downregulating ETS1 and RPS6KA1
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- Published online on: October 1, 2020 https://doi.org/10.3892/mmr.2020.11556
- Pages: 4619-4628
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Copyright: © Yin et al. This is an open access article distributed under the terms of Creative Commons Attribution License.
Abstract
Introduction
Ureteropelvic junction obstruction is the most common obstructive urinary tract disease in pediatric urology, with an incidence of 0.5–1/1,000 (1). It is also one of the causes of obstructive nephropathy characterized by renal fibrosis (2). The primary features of this irreversible renal fibrosis are glomerular sclerosis and tubulointerstitial fibrosis (3). Previous studies have revealed that tubulointerstitial fibrosis is associated with the process of epithelial-mesenchymal transition (EMT) (4,5). EMT is characterized by a loss of adhesion and polarity of epithelial cells and induction of α-smooth muscle actin (α-SMA) (6,7). EMT is involved in numerous pathological changes, including fibrosis and tumor metastasis (8,9). The TGF-β signaling pathway serves a key role in regulation of renal fibrosis (10). TGF-β1 expression levels are significantly upregulated in the process of renal fibrosis caused by unilateral ureteral obstruction (11).
A number of proteins with differential expression levels between rat kidney tissue from sham operated group and those with complete unilateral ureteral obstruction were identified in our previous study (12). These identified proteins have been reported to be involved in cell apoptosis, energy metabolism and injury of mitochondria and oxidative stress in a preliminary study (12). AMP-activated protein kinase (AMPK), comprising α1/2, β1/2 and γ1/2/3 subunits, is a mitochondrial energy sensor that detects changes in AMP levels (13). AMPK is involved in the maintenance of cellular energy balance by affecting multiple factors during metabolism (14). For example, activation of AMPK increases the rate of catabolic (ATP-generating) pathways and decreases the rate of anabolic (ATP-utilizing) pathways (15). Increased intracellular ratio of AMP to ATP activates AMPK; AMP binds to the AMPK γ subunit, causing conformational changes in the protein and allowing phosphorylation of the Thr-172 site in the α subunit (16). Previous studies have revealed that AMPK, particularly AMPKα2, regulates the EMT process during liver and kidney fibrosis (17–19) and serves an important role in tumor cell metastasis (20). However, the underlying mechanisms for AMPK changes in renal tubular EMT remain unclear.
In the present study, the expression levels of AMPKα2 in EMT-derived normal rat renal tubular epithelial (NRK-52E) cells induced by TGF-β1 were investigated. Gene microarray was used to analyze differential gene expression levels in EMT-derived NRK-52E cells before and after AMPKα2 knockdown (KD). Ingenuity pathway analysis (IPA) was performed to identify specific genes and signaling pathways involved in the regulation of EMT by AMPKα2. Finally, reverse transcription-quantitative PCR (RT-qPCR) and western blotting were used to verify the prediction results.
Materials and methods
Cell culture, RNA interference and TGF-β1 EMT induction
NRK-52E cells (Cell Bank of the Chinese Academy of Sciences) were cultured in DMEM (high glucose; cat. no. SH30022.01; Hyclone; Cytiva) supplemented with 10% FBS (cat. no. SH30071.03; Hyclone; Cytiva) and 3% penicillin-streptomycin solution (cat. no. SV30010; Hyclone; Cytiva). Cell culture was maintained at 37°C in a humidified atmosphere at 5% CO2. Th cell medium was changed every 2 days.
The sequence of small interfering RNA (5′-GCTGACTTCGGACTCTCTA-3′) was designed by Shanghai GeneChem Co., Ltd. for targeting the AMPKα2 sequence (GenBank no. NM_023991). The AMPKα2 hairpin oligonucleotide was inserted into the GV248-GFP lentiviral vector (Shanghai GeneChem Co., Ltd.) to construct a GV248-GFP-short hairpin (sh)AMPKα2 KD vector. The negative control (shCtrl) sequence was 5′-TTCTCCGAACGTGTCACGT-3′, and when incorporated into the lentiviral vector was referred to as GV248-GFP-shCtrl. Then, GV248-GFP-shAMPKα2 KD and GV248-GFP-shCtrl were respectively co-transfected with pHelper 1.0 (Shanghai GeneChem Co., Ltd.) and pHelper 2.0 (Shanghai GeneChem Co., Ltd.) into 293T cells (Shanghai GeneChem Co., Ltd.) to package and produce the shRNA expressing and shCtrl lentivirus. The viral titers of AMPKα2 shRNA lentivirus or control lentivirus reached 1×109 TU/ml for further studies.
NRK-52E cells were seeded in a 6-well tissue culture plate with 1×105/well, 1 day prior to infection. The complete culture solution was replaced by infection enhancing solution with 5 µg/ml polybrene (Shanghai GeneChem Co., Ltd.) and the packed AMPKα2 shRNA lentivirus or control LV was added to the cells with multiplicity of infection 25. After 12 h, the lentivirus solution was replaced with complete culture solution. At 72 h post-transfection, the efficacy of AMPKα2 KD was validated via RT-qPCR (Fig. S1).
For TGF-β1 treatment, all cells were stimulated with 10 ng/ml recombinant TGF-β1 (ProteinTech Group, Inc.) at 37°C for 24 h. Cells were divided into four groups: Negative control, TGF-β1-treated, TGF-β1-treated + shCtrl and TGF-β1-treated + shAMPKα2 KD. Protein expression levels and location were determined using immunofluorescence staining. Total RNA was extracted and analyzed using RT-qPCR. Proteins extracted from total cell lysates were analyzed using western blotting. All measurements were repeated ≥3 times.
Gene microarray
The present microarray dataset has been deposited in National Center for Biotechnology Information Gene Expression Omnibus (accession no. GSE141981). The genome-wide effect of AMPKα2 KD was assessed using the GeneChip™ Rat Genome 2302.0 Array (Affymetrix; Thermo Fisher Scientific, Inc.) consisting of 28,000 genes. A total of three biological replicates of EMT-derived NRK-52E cells transduced with shAMPKα2 or shCtrl LV (for 72 h) were analyzed using a microarray. RNA was initially isolated using TRIzol® reagent and quality was determined using the NanoDrop 2000 spectrophotometer (NanoDrop; Thermo Fisher Scientific, Inc.) and Agilent Bioanalyzer 2100 (Agilent Technologies, Inc.). Individual microarrays were used for gene expression level profiling of each sample. Briefly, 500 ng RNA samples were reverse-transcribed and labeled with biotin using the GeneChip3′ IVT labeling kit according to the manufacturer's protocol. Labeled complementary (c)DNA was then hybridized onto the GeneChip™Rat Genome 230 2.0 Array. Arrays were performed with the GeneChip® Hybridization, Wash and Stain kit using the GeneChip® Fluidics Station 450. All GeneChip® products were obtained from Affymetrix (Thermo Fisher Scientific, Inc.) and used according to the manufacturer's protocol. The chip array was scanned directly post-hybridization using the GeneChip® Scanner 3000. Microarray data were analyzed using GeneSpring software (version 11; Agilent Technologies, Inc.). P-values were determined using a linear model based on the empirical Bayesian distribution (21). The false discovery rate (FDR) was corrected using the Benjamini-Hochberg method (22). The screening criteria for significantly differential genes were |fold-change|>3 and FDR<0.05.
IPA
Datasets representing differentially expressed genes derived from microarray analyses were imported into the IPA tool (ingenuity.com; Ingenuity® Systems). The ‘core analysis’ function in the IPA software was used to interpret differentially expressed data, which included functional signaling pathways. Differentially expressed genes were mapped onto functional signaling pathways available in the Ingenuity database. Z-score activation algorithms were computed using the IPA software. Analyses performed within the IPA program included identification of a particular dataset and its functional signaling pathways.
RT-qPCR
Total RNA was isolated from NRK-52E cells using RNAiso Plus (Takara Bio, Inc.) according to the manufacturer's instructions and subjected to reverse transcription into cDNA using the PrimeScript™ RT Reagent kit (Takara Bio, Inc.) Reverse transcription was performed at 37°C for 15 min and then 95°C for 5 sec. RT-qPCR analysis was performed using SYBR® Premix Ex Taq™ (Takara Bio, Inc.) and the ABI ViiA7DX System (Applied Biosystems; Thermo Fisher Scientific, Inc.). β-actin expression levels were used as an internal reference for all PCR experiments. RT-qPCR primers designed for specific target genes were synthesized by Takara Bio, Inc. (Table SI). PCR reactions were performed using the following cycling conditions: 95°C for 30 sec, followed by 40 cycles at 95°C for 5 sec, 60°C for 30 sec and 72°C for 20 sec. The relative mRNA levels for each sample were calculated by the 2−ΔΔcq method (23).
Western blot analysis
Proteins were isolated using an isolation kit (Beyotime Institute of Biotechnology) and quantified using the 2D-Quant kit (Beyotime Institute of Biotechnology) according to the manufacturer's instructions. A total of 50 µg protein/lane extracted from cells was separated by 8% SDS-PAGE and then transferred in Tris-HCl methanol (20 mM Tris, 150 mM glycine and 20% methanol) onto PVDF membranes (EMD Millipore) using a Trans-Blot electrophoresis transfer cell (Bio-Rad Laboratories, Inc.). The membranes were subsequently blocked with 5% non-fat dry milk in TBS containing 0.1% Tween-20 for 2 h at room temperature and incubated with primary antibodies overnight at 4°C. Primary antibodies included AMPKα2 (polyclonal rabbit; 1:2,000; product code ab3760; Abcam), v-ets erythroblastosis virus E26 oncogene homolog-1 (ETS-1) (monoclonal rabbit; 1:1,000; product no. 14069S; Cell Signaling Technology, Inc.), homolog-1 and ribosomal protein s6 kinase A1 (RPS6KA1) (monoclonal rabbit; 1:1,000; product code ab32114; Abcam), E-cadherin (monoclonal mouse; 1:1,000; product no. 14472S; Cell Signaling Technology, Inc.), α-SMA (monoclonal mouse; 1:100; product code ab7817; Abcam), vimentin (monoclonal mouse; 1:1,000; product code ab8978; Abcam) and GAPDH (monoclonal rabbit; 1:10,000; product code ab181602; Abcam). Following three washes in TBST (10 min/wash), the membranes were incubated with goat anti-rabbit or anti-mouse IgG-HRP (both 1:2,000; product codes ab6721 and ab6789, respectively; both Abcam) secondary antibodies for 1 h at room temperature and were washed again. All immunoblots were performed ≥3 times. The antigen-antibody complexes were visualized using enhanced chemiluminescence reagents (Thermo Fisher Scientific, Inc.). GAPDH was used as a loading control. Detected bands were quantified using ImageJ 2× software (version 2.1.4.7; National Institutes of Health). The relative density of each protein was calculated by dividing the optical density value of each protein by that of the loading control.
Immunofluorescence staining
NRK-52E cells (1×106) were washed with PBS and fixed in 4% paraformaldehyde for 30 min at room temperature. Fixed cells were washed again with PBS and permeabilized in 0.5% Triton X-100 diluted in PBS for 10 min at room temperature. The cells on the slides were subsequently blocked with 5% bovine serum albumin (Beyotime Institute of Biotechnology) for 1 h at room temperature. Subsequently, the negative control and TGF-β1-treated groups were incubated with the AMPKα2 antibody (polyclonal rabbit; 1:100; product code ab3760; Abcam) at 4°C overnight. The TGF-β1-treated + shCtrl and TGF-β1-treated + shAMPKα2 KD groups were incubated with the green fluorescent protein (GFP) antibody (polyclonal rabbit antibody; 1:2,000; product code ab6556; Abcam) at 4°C overnight, then incubated with fluorescein isothiocyanate and rhodamine-conjugated goat anti-rabbit (1:100; cat. no. sc-2012; Santa Cruz Biotechnology, Inc.) secondary antibodies. 0.1% DAPI (BIOSS) was used to stain cell nuclei on glass slides for 5 min at 37°C. The cells were then examined using fluorescence microscopy (magnification, ×200; Nikon CE1 Confocal Microscope; Nikon Corporation).
Statistical analysis
Data are presented as the mean ± SEM. The number of repeats was ≥3 times. Statistical significance between two groups was determined using unpaired Student's t-test and between four groups by one-way ANOVA. P-values were calibrated using Bonferroni's correction as a post hoc test. Analysis was performed using SPSS software (version 23.0; IBM Corp.). P<0.05 was considered to indicate a statistically significant difference.
Results
AMPKα2 expression levels are upregulated following TGF-β1-induced EMT in NRK-52E cells and EMT is impaired in NRK-52E cells following AMPKα2 knockdown
TGF-β1 was used to induce EMT in NRK-52E cells. Resulting morphological changes in the NRK-52E cells included a change from typical round and polygonal to fusiform shape, indicating that EMT occurred (Fig. 1). In addition, western blot experiments demonstrated that EMT protein markers α-SMA and vimentin were upregulated, whereas epithelial cell protein marker E-cadherin was downregulated, further confirming the occurrence of EMT (Fig. 2).
Immunofluorescence experiments demonstrated that AMPKα2 was primarily expressed in the cytoplasm and nucleus of NRK-52E cells (Fig. 3A). Western blotting and RT-qPCR experiments revealed that AMPKα2 protein and mRNA expression levels were significantly upregulated during EMT in NRK-52E cells (Figs. 3B and 4).
GFP expression levels were observed 72 h following shAMPKα2 and shCtrl LV transfection in NRK-52E cells that underwent EMT induced by TGF-β1, indicating that transfection was successful (Fig. 5A). RT-qPCR demonstrated that the expression levels of AMPKα2 mRNA were downregulated by 70% in the TGF-β1-treated + shAMPKα2 group compared with the TGF-β1-treated + shCtrl group, indicating that AMPKα2 was specifically and effectively knocked down (Fig. 5B). In addition, western blot experiments revealed that expression levels of AMPKα2 protein were downregulated in the TGF-β1-treated + shAMPKα2 group compared with the TGF-β1-treated + shCtrl group (Fig. 4). The expression levels of α-SMA and vimentin were downregulated, whereas E-cadherin expression levels were upregulated, suggesting that the EMT process was inhibited following AMPKα2 knockdown (Fig. 2). These data indicated that AMPKα2 may play a key regulatory role in the process of EMT in NRK-52E cells.
Differential gene expression levels and IPA following AMPKα2 KD in NRK-52E cells with EMT
In order to detect which genes were altered following AMPKα2 KD, the gene expression level profiles of EMT-derived NRK-52E cells transduced with shAMPKα2 or shCtrl-payload LVs were determined using the GeneChip Rat 230 2.0® PathArray™ Rat Gene Expression Array with three biological replicates. A total of 1,588 differentially expressed genes were identified, of which 1,510 were downregulated and 78 were upregulated (Fig. 6A).
Next, IPA was used to perform pathway analysis of these 1,588 differentially expressed genes. The IPA demonstrated that AMPKα2 may regulate EMT progression in NRK-52E cells via multiple pathways, including ERK/MAPK pathway, Bone morphogenetic protein signaling pathway and Ephrin Receptor Signaling. According to the IPA internal algorithms and standards, a z-score >2 represents a significantly activated pathway, whereas z-score <-2 represents a significantly inhibited pathway. In the present study, the ERK/MAPK pathway was significantly inhibited (z-score=−3.550; Fig. 6B). Therefore, AMPKα2 regulation of renal tubular epithelial EMT was achieved via the ERK/MAPK pathway.
IPA results indicated that 36 genes were inhibited in the ERK/MAPK signaling pathway following AMPKα2 knockdown (Table SII; Fig. 6C).
ETS1 and RPS6KA1 in ERK/MAPK signaling pathway are upregulated in NRK-52E cells with EMT, whereas ETS1 and RPS6KA1 are downregulated following AMPKα2 KD
A total of five significantly inhibited genes, including HRas proto-oncogene, GTPase (HRAS), CRK proto-oncogene, adaptor protein (CRK), ETS1, RPS6KA1 and cAMP responsive element binding protein 1 (CREB1), were selected for validation. Using RT-qPCR, ETS1 and RPS6KA1 mRNA levels were revealed to be significantly upregulated in the TGF-β1-treated group compared with the negative control. The relative mRNA expression levels of ETS1 and RPS6KA1 were significantly downregulated in the TGF-β1-treated + shAMPKα2 KD group compared with the TGF-β1-treated + shCtrl group (Fig. 7A and B). Inconsistent with microarray results, AMPKα2 downregulation had no effect on HRAS, CRK and CREB1 (Fig. 7C-E). Western blot experiments revealed that expression levels of ETS1 and RPS6KA1 protein in the TGF-β1-treated group were significantly higher than in the negative control. The relative mRNA expression levels of ETS1 and RPS6KA1 were significantly lower in the TGF-β1-treated + shAMPKα2 KD group than in the TGF-β1-treated + shCtrl group (Fig. 8). Therefore, AMPKα2 may act by regulating ETS1 and RPS6KA1 in the ERK/MAPK signaling pathway during EMT.
Discussion
Renal fibrosis is considered to be an irreversible process that develops into end-stage renal failure (24,25). EMT serves an important role in obstructive nephropathy and renal fibrosis (26). Therefore, delay, prevention and reversal of renal cell EMT are important for the treatment of obstructive nephropathy (27). In the present study, AMPKα2 served a key role in the EMT of NRK-52E cells and was upregulated in TGF-β1-induced EMT-derived NRK-52E cells. Interference with AMPKα2 expression levels by shAMPKα2 LV significantly impaired EMT progression. Moreover, using microarray and IPA, it was revealed that AMPKα2 may play an important role in EMT process by regulating ETS1 and RPS6KA1.
AMPK is an AMP-activated protein kinase that detects changes in AMP levels and maintains cell energy balance via multiple pathways, including Hippo-Yes-associated protein pathway and Hedgehog signaling pathway, that affect cellular metabolism, thus serving an important role in kidney disease (28,29). However, current research on promotion or inhibition of EMT following AMPK activation is controversial, which may be due to the biological or cellular specificity of AMPK. The Wang et al (17) study of rat liver cells indicated that AMPK promoted hepatocyte EMT, which leads to liver fibrosis, whereas AMPK-specific inhibitors can limit this process. In addition, EMT also promotes tumor cell metastasis. Studies have shown that in breast and lung cancer, as well as melanoma cells, AMPK activation causes EMT, thereby promoting tumor cell metastasis (20,30). The results of the present study are consistent with these previous findings. However, other studies contradict the hypothesis that AMPK activation increases EMT: Previous research has revealed that activation of AMPK inhibited trans-differentiation of myofibroblasts induced by TGF-β/SMAD family member 3 and the occurrence of hepatic astrocytic fibrosis (31,32). In addition, metformin was revealed to activate AMPK to inhibit the TGF-β signaling pathway and alleviate the EMT process in kidney in a rat model of renal ischemia-reperfusion injury (18). These inconsistent results may be due to tissue specificity or distinct EMT models. In the present study, TGF-β1 was used to induce EMT in NRK-52E cells and the expression levels of AMPKα2 were upregulated. EMT was inhibited following LV AMPKα2 KD, indicating that AMPKα2 serves an important role in the EMT of NRK-52E cells.
In order to investigate the expression levels of differential genes in EMT-derived NRK-52E cells before and after AMPKα2 KD, high-throughput analysis was used. According to the gene chip and IPA results, genes in the ERK/MAPK pathway were strongly inhibited following AMPKα2 KD, indicating that AMPKα2 modulates renal tubular EMT by inhibiting the ERK/MAPK pathway. A total of five genes that were strongly inhibited in the ERK/MAPK pathway, including HRAS, CRK, ETS1, RPS6KA1 and CREB1, were selected for validation. Using RT-qPCR, ETS1 and RPS6KA1 were found to be highly expressed in EMT-derived NRK-52E cells. ETS1 and RPS6KA1 gene expression levels decreased following AMPKα2 KD, which is consistent with the microarray results, indicating that AMPKα2 KD inhibits EMT by downregulating ETS1 and RPS6KA1 gene expression levels. However, HRAS, CRK and CREB1 verification results may not be consistent with the microarray results. CRK and CREB1 gene expression levels decreased following AMPKα2 KD as shown in microarray and RT-qPCR experiments, but there was no statistical difference in RT-qPCR validation. HRAS gene expression was decreased following AMPKα2 KD in microarray, but increased in RT-qPCR validation.
RPS6KA1 is a member of the serine threonine kinase family and has an N-terminal and a C-terminal kinase domain (33). The C-terminal domain can be activated by ERK1/2 phosphorylation and calcium-dependent kinase (33). Activated RPS6KA1 phosphorylates CREB, NF-κB and other transcription factors (34). RPS6KA1 cause apoptosis of renal tubular epithelial cells during renal fibrosis (35), although to the best of our knowledge, EMT of renal tubular epithelial cells has not yet been reported. ETS1 is a downstream transcription factor of ERK (36). ETS1 is widely expressed in rat kidney and its normal expression levels ensure normal differentiation and development of the kidney (37). A previous study demonstrated that ETS1 may serve a role in the differentiation of liver cells via regulation of the ERK pathway (38). ERK/MAPK cascade activation is involved in a number of signaling pathways and comprises a class of important molecules that receive membrane receptor signals and transport them to the nucleus (39). This cascade serves a key role in numerous differentiation-associated signaling pathways, including oxidative stress (39). The present study demonstrated that, in NRK52E cells with EMT, AMPKα2 KD resulted in downregulation of ETS1 and RPS6KA1 in the MAPK/ERK pathway, and the EMT process was impaired. This indicated that AMPKα2 may serve a key role in the EMT of renal tubular epithelial cells by regulating ETS1 and RPS6KA1. AMPKα2 and RPS6KA1 are located in the cytoplasm and nucleus, whereas ETS1 is located in the nucleus. Hypothetically, when oxidative stress occurs, phosphorylation of AMPKα2 is induced, which may directly or indirectly interact with and activate ETS1 and RPS6KA1. Activated ETS1 and RPS6KA1 may act as transcription factors, regulate the production of EMT-associated proteins, and thereby participate in regulating cell differentiation. The underlying mechanism and association between AMPKα2 and its regulation require further investigation.
The present study had certain limitations. Subsequent experiments are required to verify whether AMPKα2 similarly regulates RPS6KA1 and ETS1 and whether AMPKα2 phosphorylation occurs and how AMPKα2 regulates RPS6KA1 and ETS1 in the human renal tubular EMT. To the best of our knowledge, the present study is the first to demonstrate that AMPKα2 KD may impair renal tubular EMT by inhibiting the expression levels of RPS6KA1 and ETS1.
In summary, AMPKα2 serves an important regulatory role in rat renal tubular EMT and this regulation may be achieved by modulating ETS1 and RPS6KA1 in the ERK/MAPK pathway. However, specific AMPKα2 regulation of ETS1 and RPS6KA1 requires further study.
Supplementary Material
Supporting Data
Acknowledgements
Not applicable.
Funding
The present study was supported by the National Natural Science Foundation of China (grant. no. 81571514).
Availability of data and materials
The datasets used and/or analyzed during the current study are available from the corresponding author on reasonable request.
Authors' contributions
XY and YY conceived and designed the experiments. XY, FM and XF performed the experiments. XY, YY, QZ and XL performed data analysis and wrote the paper. All authors read and approved the final manuscript.
Ethics approval and consent to participate
Not applicable.
Patient consent for publication
Not applicable.
Competing interests
The authors declare that they have no competing interests.
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