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Silencing long noncoding RNA LINC01138 inhibits aerobic glycolysis to reduce glioma cell proliferation by regulating the microRNA‑375/SP1 axis

  • Authors:
    • Chengning Xu
    • Haoran Yin
    • Xi Jiang
    • Chunming Sun
  • View Affiliations

  • Published online on: October 11, 2021     https://doi.org/10.3892/mmr.2021.12486
  • Article Number: 846
  • Copyright: © Xu et al. This is an open access article distributed under the terms of Creative Commons Attribution License.

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Abstract

Glioma is a primary cerebral neoplasm that originates from glial tissue and spreads to the central nervous system. Long noncoding RNAs are known to play a role in glioma cells by regulating cell proliferation, migration and invasion. The aim of the present study was to investigate the mechanism by which long intergenic non‑protein coding RNA (LINC) 01138 affects glycolysis and proliferation in glioma cells via the microRNA (miR)‑375/specificity protein 1 (SP1) axis. LINC01138 expression was assessed in glioma tissues and cells using reverse transcription‑quantitative PCR and the association between LINC01138 and patient clinicopathological features was analyzed. Glucose uptake, lactic acid secretion, cell proliferation, and glycolysis‑related enzyme levels were detected following LINC01138 silencing using CCK‑8, EDU assay and western blot analysis. miR‑375 and SP1 expression levels were also assessed, and the distribution of LINC01138 in the nucleus and cytoplasm was investigated using subcellular fractionation localization. Furthermore, the binding relationships between LINC01138 and miR‑375, and between miR‑375 and SP1 were assessed via dual‑luciferase experiment, RIP and RNA pull‑down assays. Finally, xenograft transplantation models were used to verify the in vitro results. LINC01138 was highly expressed in glioma, which was independent of patient sex or age but was significantly related to tumor diameter, the World Health Organization tumor grade and lymph node metastasis. Silencing LINC01138 significantly reduced glioma glycolysis and cell proliferation. Moreover, LINC01138 acted as a competing endogenous RNA to sponge miR‑375 and promote SP1 expression. miR‑375 inhibition significantly reversed the effect of LINC01138 silencing. In addition, silencing LINC01138 significantly reduced tumor growth in vivo. The present study demonstrated that silencing LINC01138 inhibited aerobic glycolysis and thus reduced glioma cell proliferation, potentially by modulating the miR‑375/SP1 axis.

Introduction

Glioma is a primary cerebral neoplasm that originates from glial tissue and spreads to the central nervous system. Glioma accounts for 31% of the central nervous system tumors in adults and is characterized by diverse histopathological changes, poor clinical outcomes and high aggressiveness (1,2). The clinical heterogeneity, rapid cell dissemination, invasion and frequent recurrence of glioma results in high incidence and mortality rates, with the 5-year survival rate of patients with glioma being ~5% (3,4). Studies show that every year, ~100,000 people worldwide are diagnosed as having diffuse glioma (5), and the proportion of patient death within 1 month and 3 months after the diagnosis was 9.24 and 19.15% respectively for all glioma patients (6). Moreover, patients with glioma often suffer from complications, including epilepsy, extensive neurodegeneration and cognitive impairment, due to aberrant glutamate secretion in the glioma microenvironment (7). Glioma grading is beneficial for the prevention, control and prognosis of glioma (8). Multiple chemical and biomedical management strategies, including ultrasound, receptor-targeted methods, and local therapeutic delivery by interstitial spray and polymeric hydrogels, are all beneficial for patients with glioma (9). Despite these available treatments, the prognosis and survival rate of patients with glioma remain poor, and the development of new effective treatments for glioma is challenging (10). Therefore, the identification of novel therapeutic targets for glioma is desperately needed.

Aerobic glycolysis, the metabolism of glucose to lactate, is commonly enhanced in cancer and is a malignant adaptation that allows for continued cell proliferation in diverse brain tumor microenvironments (11). Lactic acid, the final product of the glycolysis pathway, can only accumulate in cells or be transported out of cells by specific transporters. Intracellular lactic acid content can therefore act as one of the principal biochemical markers of the intracellular glycolysis rate (12). Glucose transporter (GLUT) is required for the transport of glucose into cells and hexokinase (HK) is required for glucose phosphorylation. Next, the phosphorylated glucose is isomerized into fructose, whereas phosphofructokinase (PFK) is responsible for the phosphorylation of fructose. Following a series of reactions, pyruvate kinase (PK) catalyzes ADP to generate ATP (1315). Compared with healthy cells, the altered metabolism of cancer cells means they depend heavily on aerobic glycolysis for proliferation. Interference with tumor-specific glycolysis-related enzymes is a potential and promising method for the treatment of glioma (16). The present study therefore aimed to explore the mechanism of aerobic glycolysis in human glioma cell proliferation.

Long noncoding RNAs (lncRNAs) have been identified as promising biomarkers that serve as oncogenes or tumor suppressors, with lncRNA dysregulation being a necessary step in tumor growth and metastasis (17). Furthermore, lncRNAs are involved in the progression of a wide range of glioma neoplasms, regulating cell cycle progression, mediating apoptotic pathways and changing cancer cell behavior (18). Long intergenic non-protein coding RNA (LINC) 01138 is a known oncogene, and is highly expressed in hepatocellular cancer, prostate cancer and clear cell renal cell carcinoma (ccRCC). LINC01138 expression is also closely correlated with poor overall survival rates (19). However, the expression patterns and function of LINC01138 during glioma progression remain largely unknown. Therefore, the present study attempted to determine the role and underlying mechanisms of LINC01138 in glioma.

Salmena et al (20) demonstrated that lncRNAs may act as competing endogenous RNAs (ceRNAs), interacting with microRNAs (miRs) in human cancer. A recent study reported that LINC01138 may facilitate gastric cancer progression by sponging miR-1273e (21). However, to the best of our knowledge, the ceRNA network of LINC01138 has not been reported. Furthermore, miRs have been demonstrated to be promotors or inhibitors of different types of cancer, including glioma (22). Evidence has shown that miR-375 expression is often downregulated in various types of cancer (2325). Notably, the ceRNA interaction between miR-375 and lncRNAs could modulate the pathogenesis and development of colon adenocarcinoma and triple-negative breast cancer (26,27). Several studies have demonstrated that the lncRNA/miR/mRNA axis serves a role in colorectal cancer, ovarian cancer and thyroid carcinoma and thus affects cancer progression (2830). Furthermore, specificity protein 1 (SP1) upregulation has been reported to enhance glioma self-renewal and to predict a poor prognosis (31). As a downstream gene in the lncRNA/miR/mRNA axis, SP1 has been determined to be regulated by lncRNA-miR crosstalk in various types of cancer, including non-small cell lung cancer and lung adenocarcinoma (32,33). SP1 is involved in the occurrence and malignancy of multiple neoplasms; however, how it functions in glioma remains unclear (34). It was therefore hypothesized that there may be crosstalk between LINC01138, miR-375 and SP1 in glioma. The present study aimed to explore the effect of LINC01138, miR-375 and SP1 in glioma.

Materials and methods

Ethical standards

The present study was approved and supervised by the Ethics Committee of The First Affiliated Hospital of Soochow University (Suzhou, China; approval no. SDU-MED-2017-085), and was in accordance with the Declaration of Helsinki. Animal experiments were approved by the Animal Ethics Committee of The First Affiliated Hospital of Soochow University (approval no. S20200616018) and followed the guidelines of Animal Research: Reporting of In Vivo Experiments 2.0 (35).

Tissue sample collection

Between January 2018 and January 2019, 108 pairs (54 males and 54 females) of glioma tissues and adjacent normal brain tissues were collected at The First Affiliated Hospital of Soochow University. According to the World Health Organization (WHO) tumor grade criteria (36), 62 tissue samples were grade I + II tumors, and 46 tissue samples were grade III + IV tumors. No patient received any treatment prior to sample collection. The extracted tissues were immediately frozen and stored in liquid nitrogen.

Cell culture

Immortalized normal human astrocytes (NHAs) HASTR/ci35, human glioma cell lines (A172, U251MG, TJ899 and TJ905 cells) and 293T cells (all purchased from The Cell Bank of Type Culture Collection of The Chinese Academy of Sciences), were cultured in Dulbecco's modified Eagle's medium (DMEM; Gibco; Thermo Fisher Scientific, Inc.) containing 10% fetal bovine serum (FBS; Thermo Fisher Scientific, Inc.) and penicillin (100 µg/ml)-streptomycin (100 U/ml) at 37°C in 5% CO2. Cells were detached using 0.25% trypsin and subcultured at a ratio of 1:3. Cells were then seeded into 6-well plates (3×105 cells/well). When the cells reached 70–80% confluence, they were considered to be in the logarithmic growth phase and were selected for subsequent experiments.

Cell grouping and transfection

Cells in the logarithmic growth phase were seeded into 6-well plates (2×105 cells/well). When the cells had attached to the well and reached 30–60% confluence they were transfected using Lipofectamine 2000® (cat. no. 11668-027; Invitrogen; Thermo Fisher Scientific, Inc.). Each transfection construct (50 nM; Shanghai GenePharma Co., Ltd.) was diluted using 250 µl serum-free RPMI-1640 (Thermo Fisher Scientific, Inc.) medium, mixed and incubated at room temperature for 5 min; 5 µl 2000 was prepared in a similar manner. Subsequently, the transfection constructs and 2000 were mixed and incubated at room temperature for 20 min, prior to being added to the cells in the 6-well plates for 6 h at 37°C with saturated humidity and 5% CO2. The medium containing the transfection solution was then replaced with RPMI-1640 media containing 10% FBS at 37°C for 48 h. Cells were divided into the following groups: i) Control group (U251MG or TJ905 cells receiving no treatment); ii) short hairpin RNA (sh)-negative control (NC) group (U251MG or TJ905 cells transfected with the pGPU6-sh-NC plasmid); iii) sh-LINC01138 group (U251MG or TJ905 cells transfected with the pGPU6-sh-LINC01138 plasmid, three shRNAs); iv) sh-LINC01138 + inhibitor-NC group (U251MG cells transfected with sh-LINC01138 and inhibitor-NC); and v) sh-LINC01138 + miR-375 inhibitor group (U251MG cells transfected with sh-LINC01138 and miR-375 inhibitor plasmids). All vectors were purchased from Shanghai GenePharma Co., Ltd., which inserted the shRNAs into the plasmids For each transfection, 1 µg of each construct was added into each well. The sequences are shown in Table SI.

5-Ethynyl-2′-deoxyuridine (EdU) assay

Cells from each group were seeded into 96-well plates (4×103 cells/well). The Cell-Light EdU Apollo488 In Vitro kit (cat. no. 100T; (Guangzhou RiboBio Co., Ltd.) was used to assess cell proliferation until the cells reached 80% confluence. Briefly, cells were incubated at 37°C for 2 h with 100 µl RPMI-1640 medium (50 µM the EdU solution was diluted in medium at a ratio of 1:1,000). Cells were subsequently washed with phosphate-buffered saline (PBS) twice (5 min/wash), fixed using 50 µl 4% paraformaldehyde at room temperature for 30 min and incubated with 50 µl glycine (2 mg/ml) at room temperature for 5 min. Cells were then washed with PBS for 5 min, before being incubated with 100 µl 0.5% Triton X-100 for 10 min at room temperature. Cells were once again washed with PBS for 5 min. Subsequently, the cells were incubated with 100 µl 1X Apollo® staining reaction solution in the dark for 30 min at room temperature (25°C), permeated, and decolored with methyl alcohol. After the nuclei were stained with 4′,6-diamidino-2-phenylindole at room temperature for 5 min, the cells were observed under a confocal microscope (Leica Microsystems GmbH).

Cell Counting Kit-8 (CCK-8) assay

U251MG or TJ905 cells were seeded into 96-well plates (1×103 cells/well) and incubated in 100 µl medium containing 10% FBS. The cell proliferation was quantified after 24, 48 and 72 h using a CCK-8 Kit (Dojindo Molecular Technologies, Inc.) according to the manufacturer's protocol. Briefly, 10 µl CCK-8 reagent was added to each well for 1 h. The optical density was determined at 490 nm using a microplate reader.

Assessment of glucose uptake and lactate production

Glucose uptake was assessed as previously described (37). Briefly, U251MG or TJ905 cells were incubated at 35°C in Hank's balanced salt solution (HBSS; 137 mM NaCl, 5.36 mM KCl, 1.26 mM CaCl2, 0.41 mM MgSO4, 0.49 mM MgCl2, 0.63 mM Na2HPO47H2O, 0.44 mM KH2PO4, 4.17 mM NaHCO3 and 5.55 mM glucose; pH 7.2). The assay was initiated by the addition of 0.1 mM μCi/well D-[3-3H] glucose. After 15 min, the culture medium was removed and the cells were washed twice with cold HBSS to terminate the reaction. Cells were then lysed in a 0.5 M NaOH solution and analyzed using a scintillation counter (LS6500 Multipurpose Scintillation Counter; Beckman Coulter, Inc.). Each experiment was repeated three times.

Cell supernatant lactate levels were measured using a Lactate Colorimetric Assay kit (BioVision, Inc.). Briefly, cells (5×105 per dish) were seeded into 60-mm culture dishes and incubated overnight in DMEM containing 10% FBS at 37°C. Subsequently, the medium was replaced with serum-free DMEM for 1–2 h, the supernatant was collected, and the lactate levels were quantified using colorimetry according to the manufacturer's protocol.

Bioinformatics analysis

The TCGA data visualization website GEPIA (http://gepia.cancer-pku.cn/index.html) (38) was used to analyze the expression of LINC01138 and Sp1 in glioma (n=163). The online prediction software, lncLocator, developed by the pattern recognition and bioinformatics research group of Shanghai Jiaotong University (http://www.csbio.sjtu.edu.cn/bioinf/lncLocator/) (39) was used to predict the subcellular localization of LINC01138, whereas the RNA22 tool (http://cm.jefferson.edu/rna22/Precomputed/) (40) was used to predict the binding sites of LINC01138 and miR-375. The TargetScan website (http://www.targetscan.org/vert_71/) (41) was used to predict the target gene of miR-375. The lncLocator and RNA22 software were used according to the default settings. The following FASTA files were obtained from GenBank (https://www.ncbi.nlm.nih.gov/): LINC01138 (accession no. NR_027468.3) and miR-375 (accession no. NR_029867.1).

Dual-luciferase reporter assay

Wild-type (WT) and mutant (MUT) miR-375 and SP1 3′-untranslated regions were synthesized and cloned into PmiR-RB-REPORT™ plasmids (Guangzhou RiboBio Co., Ltd.). NC plasmids (empty vectors) were used as a control. Following sequencing confirmation of the WT and MUT plasmids by Sangong Bioengineering (Shanghai) Co., Ltd., the 293T cell line (1×105 cells/well in 24-well plates) was co-transfected with the WT or MUT plasmids (50 nM) and the mimic-NC or miR-375 mimic (50 nM) using Lipofectamine 2000®. Following incubation for 48 h at 37°C, cells were collected and lysed with ice-cold radioimmunoprecipitation assay (RIPA) lysis buffer (Beijing Solarbio Science & Technology Co., Ltd.) containing 1 mmol/l PMSF), followed by centrifugation for 3–5 min at 1,200 × g 4°C. The cell supernatant was harvested to quantify relative luciferase units (RLUs) using the Firefly Luciferase Reporter Gene Assay Kit (cat. no. RG005; Beyotime Institute of Biotechnology) according to the manufacturer's protocol. The relative fluorescence values were obtained by dividing the RLU value of Firefly luciferase activity by that of Renilla luciferase activity. All experiments were repeated three times.

Subcellular fractionation localization

Following a previous method (42), nuclear and cytoplasmic components were separated using the PARIS™ Kit (Thermo Fisher Scientific, Inc.). U251MG cells were harvested, washed with PBS, detached with trypsin, and centrifuged at 500 × g at 4°C for 5 min. The supernatant was discarded and the precipitates were washed using PBS and 500 µl cell fractionation buffer added with gentle agitation. Cells were incubated on ice for 5–10 min and centrifuged at 500 × g at 4°C for 5 min. The supernatant (cytoplasm) was transferred to a sterile nonenzymatic tube (2 ml) and centrifuged at 500 × g at 4°C for 5 min. The precipitates (nuclei) were added to 500 µl cell fractionation buffer and mixed via gentle agitation before the addition of 500 µl 2X lysis/binding solution and another gentle agitation at room temperature before being placed on ice for 5 min. Cells were mixed with 500 µl precooled cell disruption buffer followed by 500 µl absolute ethyl alcohol. An adsorption column was placed in the tube, 700 µl reaction solution was added, and the tube was centrifuged at 4°C at 12,000 × g for 30 sec; the solution in the tube was removed and these steps were repeated. Subsequently, 40 µl elution solution was added and the samples were centrifuged at 4°C at 12,000 × g for 3 sec. A second elution step was performed using 10 µl elution solution. LINC01138 expression was detected by reverse transcription-quantitative PCR (RT-qPCR). GAPDH and U6 were used as cytoplasmic and nuclear internal reference genes, respectively.

RNA immunoprecipitation (RIP) assay

Following the manufacturer's instructions, Magna RIP™ RNA-Binding Protein Immunoprecipitation Kit (cat. no. 17-700; Merck KGaA) was used to determine the binding relationship between LINC01138, miR-375 and Ago2. Glioma cells (U251MG, 1.0×107 cells) were washed with precooled PBS to remove media. Cells were then lysed with ice-cold radioimmunoprecipitation assay (RIPA) lysis buffer (Beijing Solarbio Science & Technology Co., Ltd.; RIPA containing 1 mmol/l PMSF) and centrifuged at 230,000 × g at 4°C for 10 min to remove the supernatant. Co-precipitation was performed by washing and resuspending 50 µl magnetic beads from each co-precipitation reaction system in 100 µl RIP wash buffer, before adding 5 µg antibody and incubating for 30 min at room temperature. The bead-antibody complexes were washed and resuspended in 900 µl RIP wash buffer, and 100 µl cell extraction solution was added and incubated overnight at 4°C. Samples were placed on a magnetic seat to collect the bead-protein complexes. RNA was extracted from the samples following proteinase K detachment and used for subsequent RT-qPCR. The antibodies used in the RIP assays were rabbit anti-Ago2 (1:50; cat. no. ab186733; Abcam) and the NC rabbit anti-immunoglobulin G (IgG) (1:100; cat. no. ab109489; Abcam). Each experiment was repeated three times.

RNA pull-down assay

Cells were transfected with 50 nM biotin-labeled WT- miR-375 and MUT-miR-375 (Wuhan Genecreate Bioengineering Co., Ltd.). Following 48 h of incubation at 37°C, the cells were harvested, washed with PBS and incubated in specific lysis buffer (800 µl; Ambion; Thermo Fisher Scientific, Inc.) for at 4°C 10 min. After centrifugation at 20,000 × g at 4°C for 10 min, the supernatant was collected. The lysate was incubated with M-280 MagneSphere/Streptavidin beads (50 µl; 6×108 magnetic beads/ml; cat. no. 60210; Invitrogen; Thermo Fisher Scientific, Inc.) precoated with RNase-free bovine serum albumin (0.1% BSA) and the enzyme tRNA (TRNABAK-RO; MilliporeSigma), and incubated at 4°C overnight. Subsequently, the magnetic beads were collected on the magnetic frame and the supernatant was removed the beads were washed twice with precooled lysis buffer (800 µl), three times with low-salt buffer (800 µl; 0.1 M NaOH and 0.05 M NaCl) and once with high-salt buffer (800 µl; 0.1 M NaCl). Following washing, the magnetic beads were collected on the magnetic frame and the supernatant was removed and the beads were resuspended in the low-salt buffer. Following extraction of the bound RNA using TRIzol® (Invitrogen; Thermo Fisher Scientific, Inc.), LINC01138 enrichment was assessed via RT-qPCR. All experiments were repeated three times.

RT-qPCR

Total RNA was extracted from cells and tissues using TRIzol reagent. The RNA concentration and purity were determined, and the extracted total RNA was reverse transcribed into cDNA using the RevertAid First Strand cDNA Synthesis Kit (cat. no. K1621; Thermo Fisher Scientific, Inc.) according to the manufacturer's protocol. The qPCR primers (Shanghai Genechem Co., Ltd.) specific for LINC01138, miR-375 and SP1 are shown in Table I. Premix Ex Taq Probe qPCR; Takara Biotechnology Co., Ltd.) was performed to assess the expression levels of each gene. Each qPCR reaction contained: 5.3 µl 2X Taq Master Mix, 1 µl forward primer (5 µM), 1 µl reverse primer (5 µM), 1 µl cDNA and 11.7 µl RNase-free H2O. The following thermocycling conditions were used for qPCR: Expression levels were quantified using a qPCR instrument (Applied Biosystems 7500; Applied Biosystems Thermo Fisher Scientific, Inc.). mRNA expression levels were quantified using the 2−ΔΔCq method (43) and normalized to the internal reference genes; U6 for miR-375, and GAPDH for LINC01138 and SP1. All the experiments were repeated three times.

Table I.

Sequences of primers used for reverse transcription-quantitative PCR.

Table I.

Sequences of primers used for reverse transcription-quantitative PCR.

GeneSequence (5–3′)
LINC01138F: ACATCGTGAGCACATTTGAGA
R: TCTTGCTGTTCAGGGTGGTA
miR-375F: TCGCACAAACGTCGTATCCA
R: GTATCCAGTGCGTGTCGTGG
SP1F: TTGAAAAAGGAGTTGGTGGC
R: TGCTGGTTCTGTAAGTTGGG
U6F: CGCTTCACGAATTTGCGTGTCAT
R: GCTTCGGCAGCACATATACTAAAAT
GAPDHF: TCCCATCACCATCTTCCA
R: CATCACGCCACAGTTTTCC

[i] LINC, long intergenic non-protein coding RNA; miR, microRNA; SP1, specificity protein 1; F, forward; R, reverse.

Western blotting

Protein expression levels were determined via western blotting. To extract total protein, tissues were harvested and placed in centrifuge tubes, 100 µl RIPA lysis solution was added (Beijing Solarbio Science & Technology Co., Ltd.; RIPA containing 1 mmol/l PMSF), and the samples were centrifuged at 4°C at 11,000 × g for 20 min until fully lysed. After lysis the tissues were incubated on ice for 30 min at 4°C and centrifuged at 12,000 × g for 4 min at 4°C. The supernatant was then extracted and stored at −80°C. Total protein was quantified using a BCA Protein Assay Kit (Boster Biological Technology), and was adjusted to 3 µg/µl. The extracted proteins were boiled with loading buffer at 95°C for 10 min, and 30 µg protein/lane was separated by SDS-PAGE on a 10% gel (Beyotime Institute of Biotechnology). The separated proteins were subsequently transferred onto a polyvinylidene fluoride membrane (MilliporeSigma) and blocked with 5% BSA (Invitrogen; Thermo Fisher Scientific, Inc.) for 1 h at room temperature. The membranes were incubated with primary antibodies against the following: HK (1:1,000; cat. no. ab209847; Abcam), PK (1:1,000; cat. no. ab32566; Abcam), PFK (1:2,000; cat. no. ab204131; Abcam), GLUT (1:100,000; cat. no. ab115730; Abcam), SP1 (1:10,000; cat. no. ab231778; Abcam) and GAPDH (1:10,000; cat. no. ab181602; Abcam) at 4°C overnight. Membranes were washed with Tris-buffered saline-Tween-20 (0.05%) three times (5 min/wash). Following the primary antibody incubation, membranes were incubated with the corresponding goat anti-rabbit HRP-labelled secondary antibody (1:2,000; cat. no. ab6721; Abcam) for 1 h at room temperature. Membranes were subsequently washed three times (5 min/wash). Protein bands were visualized by enhanced chemiluminescence Pierce™ ECL Western Blotting Substrate (cat. no. 32209; Thermo Fisher Scientific, Inc.). A Bio-Rad Gel Dol EZ imager (Bio-Rad Laboratories, Inc.) was used for band development. The gray values of the target bands were semi-quantified using ImageJ (version 1.48; National Institutes of Health) with GAPDH as the loading control.

Xenograft tumors in nude mice

A total of 16 female BALB/c nude mice (age, 3–4 weeks; weight, 14–18 g; Nanjing Junke Biological Engineering Co., Ltd.) were raised in a specific pathogen-free environment at 18–22°C, with a humidity of 50–60% under a 12-h light/dark cycle and fed sterile food. All mice had free access to food and water. The mice were randomly divided into the sh-NC group (mice injected with U251MG cells stably transfected with sh-NC) and the sh-LINC01138 group (mice injected with U251MG cells stably transfected with sh-LINC01138). After skin disinfection, each mouse was injected with 0.2 ml cell suspension (1.0×106 cells) via the axilla (44). The general behavior of the mice and the condition of the local injection site were observed. Tumor volume (V) was assessed using Vernier calipers every other week, and was calculated as V = length × width2 × 0.5 (42). Mice were euthanized through excessive administration of sodium pentobarbital (100 mg/kg) after ~6 weeks. Following euthanasia, tumors were extracted and quantified. The humane endpoints of the study were when the mice experienced weight loss of >15% of their total weight, or mice suffered from tumor load. In the present study, when the maximum tumor length and width were as follows: Tumor length, 1.55 cm; and width, 1.12 cm, the mice were sacrificed.

Immunohistochemical staining

Tumor tissues from each group of mice were washed and dehydrated in 70, 80 and 90% ethanol solution. Then, the tissues were placed in the same amount of mixed pure alcohol and xylene for 15 min and in xylene I and xylene II for 15 min each until clear followed by mixed solution of xylene and paraffin in equal amount for 15 min and in paraffin I and II for 50–60 min each. Next, the tissues were paraffin-embedded and sliced at 5 µm, warmed, dewaxed and dehydrated. All operating temperatures are room temperature and reagents are from Sigma. Sections were washed with running water for 2 min, incubated in 3% H2O2-methyl alcohol for 20 min, washed with distilled water for 2 min and washed with 0.1 M PBS for 3 min. Sections were recovered in in a water bath (95–100°C) in the antigen retrieval solution (1 mM EDTA; pH 8.0), cooled in running water, and incubated with normal goat serum sealant (Shanghai Haoran Biotechnology Co., Ltd.) at room temperature for 20 min. When the sections had dried, they were incubated with primary antibodies targeting SP1 (1:1,000: cat. no. ab231778; Abcam) at 4°C overnight. Sections were washed three times in 0.1 M PBS (5 min/wash) and were incubated with goat anti-rabbit IgG (1:2,000: cat. no. ab6721; Abcam) secondary antibody at 37°C for 20 min. Sections were washed three times in PBS (5 min/wash) and were incubated with a HRP-labeled streptavidin working solution (Imunbio Biotechnology Co., Ltd.) at 37°C for 20 min. Subsequently, sections were subjected to three washes in PBS (5 min/wash), stained by DAB at room temperature for 2 min (Guangzhou Whiga Technology Co., Ltd.), washed with running water, counterstained with hematoxylin (Shanghai Bogoo Biological Technology Co., Ltd.) for 1 min at room temperature, washed with running water and reversed to blue staining with 1% ammonium hydroxide, followed by another wash in running water. Sections were dehydrated with an ascending ethanol series, treated with xylene, sealed with neutral resin and observed under a light microscope. To determine the number of positive cells in each field, five high-power fields were randomly chosen from each section (45).

Statistical analysis

SPSS version 21.0 (IBM Corp.) was used for data analysis. All experiments were repeated 3 times. Data are presented as the mean ± standard deviation. The data were normally distributed. Student's t-test was used for comparisons between two groups, whereas one-way or two-way analysis of variance (ANOVA) was used for comparisons among more than two groups, followed by Tukey's post hoc multiple comparisons test. P<0.05 was considered to indicate a statistically significant difference.

Results

LINC01138 is highly expressed in human glioma tissues and cells, with high expression being associated with clinicopathological features

Analysis of LINC01138 expression in human glioma tissue using The Cancer Genome Atlas revealed that LINC01138 was markedly more highly expressed compared with that in healthy tissue (Fig. 1A). In the present study, LINC01138 expression was detected in the glioma tissues and adjacent normal tissues of 108 patients with glioma. The RT-qPCR results demonstrated that LINC01138 expression levels were significantly higher in glioma tumor tissues compared with those in adjacent normal tissues (Fig. 1B; P<0.05). Furthermore, LINC01138 expression levels were significantly elevated in human glioma cell lines compared with those in NHAs (Fig. 1C; P<0.05). Analysis of the relationship between LINC01138 expression and the clinicopathological features of patients with glioma indicated that LINC01138 expression was not associated with the age and sex of patients (P>0.05), but was associated with WHO tumor grade, lymph node metastasis and tumor diameter (all P<0.05; Table II).

Table II.

LINC01138 expression and clinicopathological features of patients with glioma.

Table II.

LINC01138 expression and clinicopathological features of patients with glioma.

Clinicopathological parametersLINC01138 relative expression levelsP-value
Age, years >0.05
  <504.10±0.41
  ≥504.07±0.41
Sex >0.05
  Male4.02±0.39
  Female4.14±0.42
WHO grading <0.05
  I+II3.60±0.28
  III+IV4.24±0.30
Lymph node metastasis <0.05
  Yes4.23±0.31
  No3.76±0.40
Tumor diameter <0.05
  ≤5 cm3.72±0.37
  >5 cm4.24±0.31

[i] LINC, long intergenic non-protein coding RNA; WHO, World Health Organization.

Silencing LINC01138 inhibits glioma cell proliferation

To determine the role of LINC01138 in glioma cell proliferation, three sh-LINC01138 plasmids were constructed and transfected into U251MG and TJ905 cells, which expressed high levels of LINC01138. The sh-plasmids significantly reduced LINC01138 expression. sh-LINC01138-2 exhibited the highest silencing efficiency and was therefore selected for further experiments (Fig. 2A). The proliferation of U251MG and TJ905 cells with sh-LINC01138 was determined using CCK-8 and EdU assays. The results demonstrated that proliferation was significantly reduced in sh-LINC01138-transfected U251MG and TJ905 cells compared with that in sh-NC-transfected cells (Fig. 2B and C; all P<0.05), suggesting that silencing LINC01138 inhibited human glioma cell proliferation.

Silencing LINC01138 inhibits aerobic glycolysis in glioma cells

To identify the effect of LINC01138 on aerobic glycolysis in glioma cells, cell glucose uptake and lactic acid secretion were analyzed. The results demonstrated that both glucose uptake and lactic acid secretion by U251MG and TJ905 cells were significantly reduced by sh-LINC01138 compared with sh-NC (Fig. 3A and B; P<0.05). The ratio between glucose uptake and lactic acid secretion was 1:2 during glycolysis (46,47). Lactic acid secretion was used to calculate the proportion of the total glucose taken up by cells that was consumed by glycolysis. The results indicated that the amount of glucose consumed by glycolysis, relative to the total glucose taken up by the cells, was significantly decreased in the sh-LINC01138 group compared with that in the sh-NC group (Fig. 3C; P<0.05). Moreover, the expression levels of glycolysis-associated enzymes, including HK, PK, PFK and GLUT, were detected via western blotting. The results demonstrated that HK, PK, PFK and GLUT protein expression levels were all significantly reduced in the sh-LINC01138 group compared with those in the sh-NC group (Fig. 3D; P<0.05). These data indicated that silencing LINC01138 could aberrantly induce aerobic glycolysis in human glioma cells.

LINC01138 modulates miR-375 by acting as a ceRNA

To further investigate the function of LINC01138, its subcellular localization was predicted using lncLocator (39). LINC01138 was determined to be mainly localized to the cytoplasm (Fig. 4A). Analysis of the RNA in nuclear and cytoplasmic fractions demonstrated LINC01138 was principally distributed in the cytoplasm of U251MG (Fig. 4B) and TJ905 cells (data not shown). These results suggested that LINC01138 served a role in glioma via the ceRNA network by competitively binding to miRNA. RNA22, a miRNA target discovery tool, predicted that there was a binding site between LINC01138 and miR-375 (Fig. 4C). Furthermore, the dual-luciferase reporter assay confirmed that, compared with in the mimic NC group, the miR-375 mimic group exhibited significantly decreased luciferase activity following transfection with LINC01138-WT. Luciferase activity following transfection with LINC01138-MUT and the miR-375 mimic did not change compared with the mimic NC (Fig. 4D). The RIP assay (Fig. 4E) demonstrated the Ago2-targeted antibody precipitated LINC01138 and miR-375 at significantly higher levels compared with IgG, indicating the binding of LINC01138 and miR-375. Furthermore, compared with the Bio-probe NC group, the RNA pull-down assay (Fig. 4F) demonstrated that the Bio-miR-375-WT group had significantly increased LINC01138 expression levels, whereas the Bio-miR-375-MUT group showed no marked difference in expression. These results suggested that miR-375 could possibly directly bind to LINC01138. The RT-qPCR results demonstrated that miR-375 expression levels were significantly lower in glioma tissues compared with those in adjacent normal tissues (Fig. 4G; P<0.05). miR-375 was also expressed at significantly lower levels in human glioma cell lines compared with in NHAs (Fig. 4H; P<0.05). Furthermore, miR-375 expression in U251MG and TJ905 cells in which LINC01138 was knocked down was measured by RT-qPCR. Compared with in the sh-NC group, the sh-LINC01138 group exhibited significantly elevated miR-375 expression levels (Fig. 4I; P<0.05). Overall, LINC01138 may competitively bind to miR-375 to inhibit miR-375 expression in glioma.

Figure 4.

LINC01138 modulates miR-375 by acting as a competing endogenous RNA. (A) LINC01138 subcellular localization was predicted using lncLocator software. (B) LINC01138 subcellular localization in U251MG cells was verified by the fractionation of nuclear and cytoplasmic RNA, with GAPDH as the cytoplasmic marker and U6 as the nuclear marker. *P<0.05 vs. U6 expressed in the cytoplasm. (C) LINC01138 and miR-375 binding site was predicted by the bioinformatics software RNA22. (D) LINC01138 and miR-375 binding site was confirmed using the dual-luciferase reporter assay. *P<0.05 vs. mimic-NC. (E) The LINC01138 and miR-375 binding relationship was detected by RNA immunoprecipitation. #P<0.05 vs. IgG. (F) Binding of miR-375 to LINC01138 was confirmed by RNA pull-down assay. &P<0.05 vs. Bio-probe NC. (G) miR-375 expression levels in human glioma tissues and adjacent normal tissues (n=108) was verified by RT-qPCR. *P<0.05 vs. normal adjacent tissues. (H) miR-375 expression levels in human glioma cell lines was determined by RT-qPCR. *P<0.05 vs. NHAs. (I) miR-375 expression levels in U251MG and TJ905 cells following LINC01138 silencing was detected by RT-qPCR. *P<0.05 vs. sh-NC. Data were analyzed using (B and D) two-way ANOVA and Tukey's multiple comparisons test; (E, G and I) independent samples t-test; and (F and H) one-way ANOVA and Tukey's multiple comparisons test. Independent cell experiments were conducted three times. Data are presented as the mean ± SD. LINC, long intergenic non-protein coding RNA; miR, microRNA; NC, negative control; RT-qPCR, reverse transcription-quantitative PCR; NHA normal human astrocyte; sh, short hairpin RNA; WT, wild-type; MUT, mutant.

miR-375 downregulation reverses the role of LINC01138 silencing in promoting aerobic glycolysis and cell proliferation in human glioma

To further investigate whether LINC01138 could regulate the function of glioma cells via miR-375, a functional rescue assay was conducted. U251MG cells were divided into the sh-LINC01138 group, the sh-LINC01138 + inhibitor-NC group and the sh-LINC01138 + miR-375-inhibitor group. The transfection efficiency of miR-375 inhibitor was verified by RT-qPCR. Inhibitor NC had no effect on the expression of miR-375 in cells, but miR-375 inhibitor significantly decreased the expression of miR-375 in cells compared with inhibitor NC (Fig. 5A; P<0.05). Compared with in the sh-LINC01138 group, the sh-LINC01138 + miR-375-inhibitor group exhibited significantly increased glucose uptake and lactic acid secretion, and a significantly increased proportion of glucose consumed in glycolysis relative to the total glucose uptake (Fig. 5B-D; P<0.05). The CCK-8 assay demonstrated that the miR-375 inhibitor significantly reversed the inhibitory effect of sh-LINC01138 on glioma cell proliferation compared with the sh-LINC01138 group (Fig. 5E; P<0.05). These findings indicated that miR-375 inhibition reversed the effect of sh-LINC01138 on inhibiting abnormal aerobic glycolysis and cell proliferation in human glioma.

LINC01138 can promote SP1 expression by competing with SP1 for binding to miR-375

SP1 expression in human glioma tissues from TCGA was analyzed; the results demonstrated that SP1 was significantly more highly expressed in human glioma compared with that in healthy tissue (Fig. 6A; P<0.05). TargetScan predicted that there was a binding site between miR-375 and SP1 (Fig. 6B). The dual-luciferase reporter assay (Fig. 6C) demonstrated that compared with the mimic NC group, the luciferase activity in the binding region of SP1-WT and miR-375 in the miR-375 mimic group was inhibited, but there was no significant difference in the luciferase activity of SP1-MUT, indicating that miR-375 could specifically bind to SP1 (P<0.05). It was therefore hypothesized that LINC01138 might act as a ceRNA, sponging miR-375 to upregulate SP1 expression and eventually exacerbate the malignancy of glioma. To confirm this hypothesis, RT-qPCR was conducted to assess SP1 mRNA expression levels in both human glioma tissues and adjacent normal brain tissues. Compared with those in adjacent normal tissues and normal cells, glioma tissues and cells displayed significantly elevated SP1 mRNA expression levels (Fig. 6D and E; P<0.05). RT-qPCR and western blotting demonstrated that SP1 mRNA and protein expression levels in U251MG cells in the sh-LINC01138 group were significantly lower than those in the sh-NC group. Furthermore, SP1 mRNA and protein expression levels were recovered in the sh-LINC01138 + miR-375-inhibitor group compared with those in the sh-LINC01138 + inhibitor-NC group (Fig. 6F and G; P<0.05). In summary, LINC01138 may function as a ceRNA to sponge and suppress miR-375 expression thus increasing SP1 expression.

Figure 6.

LINC01138 can promote SP1 expression by competing with SP1 for binding to miR-375. (A) SP1 expression data in human glioma tissues from The Cancer Genome Atlas database, red represents tumor and grey normal tissue and SP1is highly expressed in tumor tissue. (B) miR-375 and SP1 binding site was predicted using TargetScan software. (C) miR-375 and SP1 binding relationship was confirmed by the dual-luciferase reporter assay. *P<0.05 vs. mimic-NC. (D) SP1 mRNA expression levels in human glioma tissues and adjacent normal brain tissues was determined by RT-qPCR, n=108. *P<0.05 vs. adjacent normal tissues. (E) SP1 mRNA expression levels in NHAs and human brain glioma cell lines were verified by RT-qPCR. *P<0.05 vs. NHAs. (F) SP1 mRNA expression levels in differently transfected cells were measured by RT-qPCR. (G) SP1 protein expression levels in cells were determined by western blotting. *P<0.05 vs. sh-NC. #P<0.05 vs. sh-LINC01138 + inhibitor-NC group. Three independent repeated cell experiments were conducted. Data are presented as the mean ± SD. Data were analyzed using (C) two-way ANOVA and Tukey's multiple comparisons test; (D) independent samples t-test; and (E-G) one-way ANOVA and Tukey's multiple comparisons test. miR, microRNA; LINC, long intergenic non-protein coding RNA; SP1, specificity protein 1; NC, negative control; RT-qPCR, reverse transcription-quantitative PCR; NHA, normal human astrocytes; sh, short hairpin RNA; WT, wild-type; MUT, mutant; num(T), number of tumor samples; num(N), number of normal adjacent tissue samples; GBM, glioblastoma.

Silencing LINC01138 inhibits tumor growth in vivo

To verify the function of LINC01138 in glioma tumor formation, a xenograft tumor model was established in nude mice. Compared with in the sh-NC group, the sh-LINC01138 group exhibited significantly reduced tumor growth and weight (Fig. 7A-C; P<0.05). RT-qPCR demonstrated that the expression levels of both LINC01138 and SP1 were significantly downregulated in the sh-LINC01138 group compared with those in the sh-NC group. Moreover, the expression levels of miR-375 were significantly upregulated in the sh-LINC01138 group compared with those in the sh-NC group (Fig. 7D; P<0.05). SP1 protein expression levels in glioma tissues were evaluated by immunohistochemical staining. The results demonstrated that SP1 protein expression levels were significantly lower in the sh-LINC01138 group compared with those in the sh-NC group (Fig. 7E; P<0.05). These findings indicated that silencing LINC01138 inhibited glioma growth in vivo by regulating the miR-375/SP1 axis.

Discussion

Glioma is one of the most prevalent and malignant endocranial neoplasms, characterized by rapid infiltration and cell growth, cellular heterogeneity, chemical resistance and a high incidence of relapse (48). Numerous lncRNAs are involved in the development and progression of glioma, mediating cancer cell growth, apoptosis, invasiveness and colony formation (49). LINC01138 has been reported to function as a biological marker of prostate cancer, promoting tumor proliferation and reducing cancer cell apoptosis (50), indicating the deleterious effect of LINC01138 in tumor progression. The present study was therefore designed to identify potential new therapeutic targets for glioma based on LINC01138. The results demonstrated that silencing LINC01138 attenuated aerobic glycolysis and the proliferation of glioma cells via the LINC01138/miR-375/SP1 ceRNA network. To the best of our knowledge, this is the first study to report the specific mechanism by which LINC01138 functions in glioma.

The present study demonstrated that LINC01138 was significantly more strongly expressed in glioma cells compared with in NHAs, and it was associated with the following clinicopathological features of the tumor: WHO tumor grade, lymph node metastasis and tumor diameter. High WHO tumor grade indicates progressive and aggressive glioma with dangerous and unpredictable consequences (51). Tumor diameter and lymph node metastasis are both valuable prognostic indicators for patients with glioma (52). Recent studies have reported that LINC01138 overexpression resulted in a poor overall survival rate and progression-free survival rate in patients with hepatocellular carcinoma (HCC) (53,54). LINC01138 was also revealed to be highly expressed in patients with gastric cancer displaying increased tumor cell biological activities, including invasiveness, viability, apoptosis evasion and expansion (21). To the best of our knowledge, there are currently no reports on LINC01138 expression and function in normal astrocytes and other normal cells. Based on this aforementioned evidence, it was hypothesized that LINC01138 was detrimental to glioma reduction.

Aerobic glycolysis is a notable characteristic of malignant tumor growth and poor clinical outcomes (12). High-grade glioma heavily depends on aerobic glycolysis to promote cancer growth and metabolic activities (55). Subsequently, in the present study LINC01138 expression was silenced in U251MG and TJ905 cells using sh-LINC01138. Silencing LINC01138 significantly inhibited aerobic glycolysis and the proliferation of human glioma cells, indicated by the significantly reduced levels of glucose uptake and lactic acid secretion, as well as significantly decreased protein expression levels of HK, PK, PFK and GLUT. The biological process of aerobic glycolysis in glioma has been shown to reduce the efficacy of medical treatments (48). Du et al (56) reported that glucose uptake and lactic acid secretion, as a result of aerobic glycolysis, greatly exacerbated glioma progression. Furthermore, another study demonstrated that when HK and PK levels were exhausted, glucose levels decreased in glioma cells and effective treatment could be facilitated (37). Moreover, PFK activation in glioma has been shown to accelerate cell growth, and aerobic glycolysis (57). GLUT deficiency has also been reported to limit glioma development and potentiate chemotherapy efficiency (58). The present study reported that knockdown of LINC01138 decreased the levels of these aforementioned proteins, and therefore silencing LINC01138 may be conducive to ameliorating glioma progression.

Previous studies suggested that the interaction between LINC01138 and protein arginine methyltransferase 5 was involved in malignant carcinomas, such as ccRCC and HCC (19,54), indicating the possibility of LINC01138 acting as a ceRNA. The present study demonstrated that LINC01138 acted as a ceRNA to sponge miR-375, and that miR-375 expression was significantly decreased in glioma cells compared with in NHAs. It was recently documented that miR-375 was expressed at low levels in glioma, and inhibited tumor growth and cancer cell proliferation (59). miR-375 has been reported to function in regulating glioma cell proliferation, with the addition of the miR-375 inhibitor enhancing cell proliferation in both U251MG and U87-MG cells (60). miR-375 is a multi-functional regulator in a diverse range of cellular pathways, which can regulate numerous functional genes (61). Ectopic expression of miR-375 is usually associated with pathological changes and the functions of miR-375 in immunity, such as its relevance with macrophages, T helper cells and autoimmune diseases. For instance, miR-375 can reduce apoptosis of macrophages in mice with liver failure; miR-375 is involved in Th1 and Th2 inflammatory and immune responses; IL-10-deficient mice are the animal models of Th1-mediated inflammatory bowel disease and miR-375 is notably elevated in the mice (61). For example, miR-375 expression has been reported to be downregulated in rheumatoid arthritis blood samples and fibroblast-like synoviocytes (62). To date, to the best of our knowledge, there are no studies investigating the interaction between miR-375 and astrocytes.

In the present study, functional rescue experiments were performed using a miR-375 inhibitor to verify the role of miR-375 in glioma. miR-375 inhibition reversed the effect of sh-LINC01138 on aerobic glycolysis and cell proliferation in human glioma. A recent study also demonstrated that miR-375-3p inhibited glucose uptake and lactic acid secretion to suppress laryngeal squamous cell carcinoma (63). The present study revealed that LINC01138 promoted SP1 expression by competing with SP1 for binding to miR-375. SP1 expression is often related to poor prognosis and increased resistance of glioma to treatments (31,34). The relationship between miR-375 and SP1 has been detailed in numerous studies. miR-375 targeted SP1 to attenuate inflammatory reactions and oxidative stress, relieving the neuronal injury caused by Parkinson's disease (64). In addition, SP1 depletion was shown to decrease glucose uptake, and inhibit cell proliferation and invasion of U251MG cells by downregulating GLUT3 expression (65). Moreover, Zhang et al (66) revealed that lncRNA RP11-626G11.3 increased SP1 expression by sponging miR-375 to exacerbate malignant glioma. In summary, the ceRNA effect of the LINC01138/miR-375/SP1 axis was verified in glioma.

In conclusion, the present study suggested that silencing LINC01138 ameliorated glioma progression by sponging miR-375 and downregulating SP1 expression. These results have therapeutic implications for glioma treatment. Future work will further explore the underlying mechanisms of the LINC01138/miR-375/SP1 axis in glioma and the corresponding potential therapeutic targets. In the in vivo experiments, the effect of LINC01138 on tumor growth was observed; however, glycolysis-related indicators were not investigated in these tumor tissues. Therefore, the mechanism of aerobic glycolysis in glioma in in vivo models will be investigated further in future work. Although the findings of the present study have implications for glioma treatment, the experimental results and their effective application in clinical practice require further validation.

Supplementary Material

Supporting Data

Acknowledgements

Not applicable.

Funding

No funding was received.

Availability of data and materials

The datasets used and/or analyzed during the current study are available from the corresponding author on reasonable request.

Authors' contributions

CX and CS conceptualized the present study. HY and XJ carried out the research, data review and writing. CS drafted the study and revised it critically for important intellectual content. CX and CS confirm the authenticity of all the raw data. All authors read and approved the final manuscript.

Ethics approval and consent to participate

The present study was approved and supervised by the ethics committee of The First Affiliated Hospital of Soochow University (Suzhou, China; approval no. SDU-MED-2017-085), and was in accordance with the Declaration of Helsinki. All patients signed written informed consent forms. Animal experiments were approved by the Animal Ethics Committee of The First Affiliated Hospital of Soochow University (approval no. S20200616018).

Patient consent for publication

Not applicable.

Competing interests

The authors declare that they have no competing interests.

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December-2021
Volume 24 Issue 6

Print ISSN: 1791-2997
Online ISSN:1791-3004

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Copy and paste a formatted citation
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Spandidos Publications style
Xu C, Yin H, Jiang X and Sun C: Silencing long noncoding RNA LINC01138 inhibits aerobic glycolysis to reduce glioma cell proliferation by regulating the microRNA‑375/SP1 axis. Mol Med Rep 24: 846, 2021.
APA
Xu, C., Yin, H., Jiang, X., & Sun, C. (2021). Silencing long noncoding RNA LINC01138 inhibits aerobic glycolysis to reduce glioma cell proliferation by regulating the microRNA‑375/SP1 axis. Molecular Medicine Reports, 24, 846. https://doi.org/10.3892/mmr.2021.12486
MLA
Xu, C., Yin, H., Jiang, X., Sun, C."Silencing long noncoding RNA LINC01138 inhibits aerobic glycolysis to reduce glioma cell proliferation by regulating the microRNA‑375/SP1 axis". Molecular Medicine Reports 24.6 (2021): 846.
Chicago
Xu, C., Yin, H., Jiang, X., Sun, C."Silencing long noncoding RNA LINC01138 inhibits aerobic glycolysis to reduce glioma cell proliferation by regulating the microRNA‑375/SP1 axis". Molecular Medicine Reports 24, no. 6 (2021): 846. https://doi.org/10.3892/mmr.2021.12486