Spectroscopic characterization of human immunodeficiency virus type-1-infected plasma by principal component analysis and soft independent modeling of class analogy of visible and near-infrared spectra

  • Authors:
    • Mirza K. Bahmani
    • Ayyoob Khosravi
    • Ramin Miri
    • Yukie Iwabu
    • Kazuyoshi Ikuta
    • Akikazu Sakudo
  • View Affiliations

  • Published online on: September 1, 2009     https://doi.org/10.3892/mmr_00000176
  • Pages: 805-809
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Abstract

Previous research has shown that it may be possible to diagnose infections of human immunodeficiency virus type-1 (HIV-1) using plasma by a partial least squares regression analysis of visible and near-infrared (Vis-NIR) spectra. In this study, the features of plasma in HIV-1-infected and healthy individuals were further investigated by Vis-NIR spectroscopy using principal component analysis (PCA) and soft independent modeling of class analogy (SIMCA). Although the mean Vis-NIR spectra of 33 HIV-1-infected individuals and 15 healthy donors showed only slight differences, the two groups were respectively distinguished using a score plot of the first versus second or second versus third principal components, and by a Coomans plot. The PCA loadings were generally consistent with the discriminating power of the SIMCA, indicating specific changes in Vis-NIR spectra after HIV-1-infection. The specific pattern possibly indicates ROH and RNH2, which may constitute specific features of components in HIV-1-infected plasma.

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September-October 2009
Volume 2 Issue 5

Print ISSN: 1791-2997
Online ISSN:1791-3004

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Spandidos Publications style
Bahmani MK, Khosravi A, Miri R, Iwabu Y, Ikuta K and Sakudo A: Spectroscopic characterization of human immunodeficiency virus type-1-infected plasma by principal component analysis and soft independent modeling of class analogy of visible and near-infrared spectra . Mol Med Rep 2: 805-809, 2009.
APA
Bahmani, M.K., Khosravi, A., Miri, R., Iwabu, Y., Ikuta, K., & Sakudo, A. (2009). Spectroscopic characterization of human immunodeficiency virus type-1-infected plasma by principal component analysis and soft independent modeling of class analogy of visible and near-infrared spectra . Molecular Medicine Reports, 2, 805-809. https://doi.org/10.3892/mmr_00000176
MLA
Bahmani, M. K., Khosravi, A., Miri, R., Iwabu, Y., Ikuta, K., Sakudo, A."Spectroscopic characterization of human immunodeficiency virus type-1-infected plasma by principal component analysis and soft independent modeling of class analogy of visible and near-infrared spectra ". Molecular Medicine Reports 2.5 (2009): 805-809.
Chicago
Bahmani, M. K., Khosravi, A., Miri, R., Iwabu, Y., Ikuta, K., Sakudo, A."Spectroscopic characterization of human immunodeficiency virus type-1-infected plasma by principal component analysis and soft independent modeling of class analogy of visible and near-infrared spectra ". Molecular Medicine Reports 2, no. 5 (2009): 805-809. https://doi.org/10.3892/mmr_00000176