MicroRNA‑337 inhibits colorectal cancer progression by directly targeting KRAS and suppressing the AKT and ERK pathways
Retraction in: /10.3892/or.2022.8394
- Authors:
- Published online on: September 25, 2017 https://doi.org/10.3892/or.2017.5997
- Pages: 3187-3196
Abstract
Introduction
Colorectal cancer (CRC) is the third most common cancer and the fourth most common cause of cancer-related deaths worldwide, with almost 1.23 million new cases and 0.6 million deaths per year (1,2). Until recently, several risk factors for CRC have been identified; these factors include age, obesity, smoking, dietary patterns, physical inactivity, metabolic syndrome and genetic and epigenetic factors (3,4). Despite advances in the diagnosis and therapy of CRC, which have improved the life expectancy of patients, the prognosis of patients with CRC remains poor (5). Approximately half of CRC patients remarkably develop distant metastases and high rates of recurrence after surgery, which are the main causes of death in the patients (6). Therefore, a better understanding of the molecular mechanisms underlying CRC formation and progression is vital to identify novel diagnostic markers and develop therapeutic strategies for patients with CRC.
Recently, microRNAs (miRNAs) have emerged as a major group of regulatory genes in plants and animals (7). miRNAs are a family of endogenous, noncoding and short RNA containing ~19–23 nucleotides (8). They negatively regulate the expression of their target mRNAs by interacting with complementary sites in the 3′ untranslated regions (UTRs), leading to translational repression or degradation of target mRNAs (9). miRNAs are often located in genomic breakpoint regions and play important roles in numerous physiological and pathological processes, including differentiation, proliferation, apoptosis, migration, invasion and survival of cells (10,11). Abnormal expression of miRNAs is observed in various human disorders, including cancer (12). Moreover, dysregulation of miRNAs is implicated in the initiation and progression of human cancers, such as CRC (13), gastric cancer(14), lung cancer (15), prostate cancer (16) and breast cancer (17). Functionally, miRNAs may act in either a tumour suppressing or promoting role in various kinds of human cancer, depending on whether they specifically target oncogenes or tumour suppressor genes (18). Therefore, miRNAs may be promising prognostic markers and therapeutic targets for patients with CRC.
miR-337, which is located at chromosome 14q32.2, aberrantly expressed several types of human cancers (19–21). However, the expression, function and underlying mechanisms of miR-337 in CRC have not been clearly elucidated. In the present study, we investigated the expression level, functions of miR-337 in CRC and its underlying molecular mechanisms.
Materials and methods
Tissue specimens
This study was approved by the Ethics Committee of First Affiliated Hospital of Harbin Medical University, and written informed consent was also obtained from each patient enrolled in this research. A total of 54 paired CRC tissues and normal adjacent tissues were obtained from CRC patients who received surgical resection at First Affiliated Hospital of Harbin Medical University between July 2014 and March 2016. These 54 CRC patients have not been treated with radiotherapy or chemotherapy prior to surgical resection. All tissue samples were immediately frozen in liquid nitrogen at the time of surgery and stored at −80°C until further use.
Cell lines and cell transfection
Five human CRC cell lines (LoVo, HCT116, HT29, SW480, SW620), normal human colon epithelium cell line FHC and human embryonic kidney 293T cells (HEK293T) were acquired from American Type Culture Collection (Manassas, VA, USA). All cells were routinely grown in Dulbecco's modified Eagle's medium (DMEM; Gibco; Thermo Fisher Scientific, Inc., Waltham, MA, USA) containing 10% foetal bovine serum (FBS; Gibco; Thermo Fisher Scientific, Inc., Waltham, MA, USA), 100 U/ml penicillin (Sigma, St. Louis, MO, USA) and 100 µg/ml streptomycin (Sigma). Cell cultures were kept in a humidified environment with 5% CO2 at 37°C.
miR-337 mimics and corresponding negative control miRNA (miR-NC) were purchased from GenePharma, Co., Ltd. (Shanghai, China). Small interfering RNA targeting Kirsten rat sarcoma viral oncogene homolog (si-KRAS) and the corresponding control siRNA (si-NC) were purchased from Ribobio (Guangzhou, China). pCMV-KRAS and blank plasmid pCMV were obtained from GeneCopoeia (Guangzhou, China). Cells were plated in 6-well clusters at a density of 60–70% confluence. Cell transfection was performed using Lipofectamine 2000 (Invitrogen; Thermo Fisher Scientific, Inc. Waltham, MA, USA) according to the manufacturer's instructions. Transfected cells were then incubated at 37°C with 5% CO2, and the culture medium was replaced with fresh DMEM supplemented with 10% FBS at 8 h post-transfection.
RNA isolation and reverse transcription-quantitative polymerase chain reaction (RT-qPCR)
Total RNA from tissue samples or cells was isolated using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) according to the manufacturer's instructions. The concentration of total RNA was examined using a NanoDrop 2000 spectrophotometer (Thermo Fisher Scientific, Madrid, Spain). To detect miR-337 expression, complementary DNA (cDNA) was prepared using TaqMan MicroRNA Reverse Transcription kit (Applied Biosystems, Carlsbad, CA, USA). Real-time PCR was then conducted using a TaqMan MicroRNA PCR kit (Applied Biosystems) on an ABI PRISM 7900 Sequence Detection system (Applied Biosystems). To quantify KRAS mRNA expression, total RNA was converted into cDNA using PrimeScript RT Reagent kit (Takara Biotechnology Co., Ltd., Dalian, China), followed by quantitative PCR with SYBR Premix Ex Taq™ (Takara Biotechnology Co., Ltd.). U6 and GAPDH served as internal control for miR-337 and KRAS, respectively. Primers used in this study were as follows: miR-337 forward, 5′-ACACTCCAGCTGGGCTCCTATATGATGC-3′ and reverse 5′-ACTCCACGACACCAGTTGAG-3′; U6 forward, 5′-CTCGCTTCGGCAGCACA-3′ and reverse 5′-AACGCTTCACGAATTTGCGT-3′; KRAS forward, 5′-ATTCCTTTTATTGAAACATCAGCA-3′ and reverse 5′-TCGGATCTCCCTCACCAAT-3′; GAPDH forward, 5′-GACTCATGACCACAGTCCATGC-3′ and reverse 5′-AGAGGCAGGGATGATGTTCTG-3′. Relative gene expression was calculated using comparative 2−∆∆Ct method (22).
Cell Counting Kit-8 (CCK-8) assay
Cells were seeded at a density of 3×103 cells/well in 96-well plates. After transfection, cells were grown at 37°C with 5% CO2 for 0, 24, 48 and 72 h. At indicated time-point, CCK8 assay was performed to determine cell proliferation. In brief, 10 µl CCK-8 reagent (Dojindo Laboratories, Kumamoto, Japan) was added into each well and incubated for another 2 h at 37°C. The optical density (OD) value was detected using a plate reader (ELx808 Bio-Tek Instruments, USA) at a wavelength of 450 nm. Three independent experiments were performed in triplicate.
Cell invasion assay
Matrigel (BD Biosciences, San Jose, CA, USA)-coated Transwell inserts containing a membrane with 8-µm pores (Costar; Corning Inc., Corning, NY, USA) were used to perform cell invasion assays. In brief, 1×105 cells suspended in 200 µl FBS-free DMEM medium were plated on top of Transwell insert, whereas DMEM medium containing 20% FBS was placed in the lower chamber as a chemoattract. After 20-h incubation, cells remaining on the upper membrane of the filter were removed by wiping with a cotton swab. The invasive cells on the lower membrane surface were fixed in 20% methanol and stained with 0.1% crystal violet. Photographs were taken, and the number of invasive cells was counted in five randomly selected fields under an inverted microscope (×200; Olympus, Tokyo, Japan). The assay was independently repeated thrice.
Flow cytometry analysis
After 48 h of transfection, transfected cells were harvested, washed with phosphate-buffered saline (PBS) and fixed with 80% ice-cold ethanol in PBS. Cell apoptosis was detected using Annexin V-FITC apoptosis detection kit (Invitrogen Corp., CA, USA). In brief, cells were re-suspended in 300 µl 1X binding buffer, followed by staining with 5 µl FITC-Annexin V and 5 µl propidium iodide for 20 min in the dark at room temperature. Cell apoptosis was recognised by a FACScan flow cytometer (Becton-Dickinson, San Jose, CA, USA), and data were analysed using CellQuest® software (Becton-Dickinson, Heidelberg, Germany).
Bioinformatics analysis and luciferase reporter assay
To determine the potential targets of miR-337, bioinformatics analysis was performed with the publicly available algorithms: TargetScan (http://www.targetscan.org), miRanda (http://www.microrna.org/microrna/getExprForm.do) and PICTA (http://pictar.mdc-berlin.de/).
Luciferase reporter assay
Luciferase reporter vector containing the wild-type (pGL3-KRAS-3′-UTR-Wt) or mutant (pGL3-KRAS-3′-UTR-Mut) 3′-UTR of KRAS were synthesised and confirmed by GenePharma Co., Ltd. HEK293T cells were seeded into 24-well plates at a density of 60–70% confluence. After incubation overnight, cells were transfected with miR-337 mimics or miR-NC, together with pGL3-KRAS-3′-UTR-Wt or pGL3-KRAS-3′-UTR-Mut using Lipofectamine 2000. Cells were collected 48 h after transfection, and luciferase activities were examined using a dual-luciferase reporter system (Promega, Madison, WI, USA) according to the manufacturer's protocols. Firefly luciferase activities were normalised to Renilla luciferase activities. Each assay was performed in triplicate.
Western blot analysis
Total protein was extracted from tissue samples or cells using radioimmunoprecipitation assay cell lysis buffer (Beyotime, Shanghai, China). Protein concentrations were quantified using BCA assay kit (Pierce, Rockford, IL, USA). Equal amounts of protein were separated by 10% SDS PAGE, transferred onto PVDF membrane (Millipore, Billerica, MA, USA) and then blocked in Tris-buffered saline with Tween (TBST) buffer with 5% fat-free milk for 2 h at 37°C. Subsequently, the membranes were incubated with primary antibodies: mouse anti-human monoclonal KRAS (sc-30; 1:1,000 dilution; Santa Cruz Biotechnology, CA, USA), mouse anti-human monoclonal p-AKT (sc-271966; 1:1,000 dilution; Santa Cruz Biotechnology), mouse anti-human monoclonal AKT (sc-81434; 1:1,000 dilution; Santa Cruz Biotechnology), mouse anti-human monoclonal p-ERK (sc-81492; 1:1,000 dilution; Santa Cruz Biotechnology), mouse anti-human monoclonal ERK (sc-514302; 1:1,000 dilution; Santa Cruz Biotechnology), and mouse anti-human monoclonal GAPDH antibody (sc-47724; 1:1,000 dilution; Santa Cruz Biotechnology). Following washing in TBST, the membranes were further probed with goat anti-mouse horseradish peroxidase-conjugated secondary antibody (sc-2005; 1:5,000 dilution; Santa Cruz Biotechnology) at room temperature for 1 h. Protein bands were visualised by applying ECL Protein Detection kit (Pierce Biotechnology, Inc., Rockford, IL, USA) and analysed using Quantity One software (Bio-Rad Laboratories, Inc., Hercules, CA, USA). GAPDH was used as the loading control.
Statistical analysis
Data are expressed as the mean ± standard deviation. All statistical analyses were performed using Student's t-test or one way ANOVA test with SPSS software (version 18.0; SPSS, Inc., Chicago, IL, USA). Student-Newman-Keuls was used to compare between two groups in multiple groups. P<0.05 was considered to indicate a statistically significant difference.
Results
miR-337 expression and its association with clinicopathological characteristics in CRC
To investigate the expression pattern of miR-337 in CRC, we measured its expression in 54 paired CRC tissues and normal adjacent tissues using RT-qPCR. As shown in Fig. 1A, miR-337 was significantly downregulated in CRC tissues compared with that in normal adjacent tissues (P<0.05). Subsequently, we explored the association between miR-337 expression and clinicopathological characteristics of CRC patients. The colorectal cancer tissues were divided into either the miR-337 low-expression group (n=28) or the miR-337 high-expression group (n=26) using the median expression level of miR-337 as a cut-off. As shown in Table I, low expression levels of miR-337 were significantly correlated with lymph node metastasis (P=0.002), distant metastasis (P=0.014) and TNM stage (P<0.0001, significant difference), whereas no correlation was found with patient gender (P=0.276), age at diagnosis (P=0.177), location (P=0.394) or tumour size (P=0.279).
Table I.Correlation of microRNA-337 expression and clinicopathological factors in colorectal cancer. |
Moreover, miR-337 expression level was also detected in CRC cell lines (LoVo, HCT116, HT29, SW480, SW620) and normal human colon epithelium cell line FHC. The expression level of miR-337 was reduced in CRC cell lines compared with that in FHC (Fig. 1B, P<0.05). These results suggested that miR-337 may play important roles in CRC formation and progression.
miR-337 inhibits CRC cell proliferation, invasion and increases apoptosis
To observe the effects of miR-337 on CRC cells, miR-337 mimics or miR-NC were transfected into HCT116 and SW480 cells. After transfection, RT-qPCR was performed to evaluate the transfection efficiency and found that miR-337 was markedly upregulated in HCT116 and SW480 cells after transfection with miR-337 mimics (Fig. 2A, P<0.05). CCK-8 assay was utilised to examine the effect of miR-337 overexpression on CRC cell proliferation and revealed that upregulation of miR-337 obviously suppressed the HCT116 and SW480 cell proliferation (Fig. 2B, P<0.05). To evaluate the effect of miR-337 on the invasion capacity of CRC cells, cell invasion assay was applied in HCT116 and SW480 cells which were transfected with miR-337 mimic or miR-NC. As shown in Fig. 2C, miR-337 overexpression decreased the invasive abilities of HCT116 and SW480 cells (P<0.05). Moreover, we used flow cytometry analysis to explore the effect of miR-337 on CRC cell apoptosis. Results showed that the restoration expression of miR-337 increased cell apoptosis in HCT116 and SW480 cells (Fig. 2D, P<0.05). These data suggested that miR-337 may serve as a tumour suppressor in CRC.
KRAS is a direct target of miR-337 in CRC
To elucidate the underlying mechanisms by which miR-337 affects the biological functions of CRC cells, we investigated the potential targets of miR-337 using bioinformatics analysis. Among these candidate genes, KRAS was selected for further validation because it was aberrantly observed in CRC and plays key roles in CRC occurrence and development (23). As shown in Fig. 3A, two miR-337 putative binding sites were identified covering the nucleotides 3532-3528 (site 1) and 4448-4454 (site 2) of KRAS 3′-UTR. To assess whether miR-337 could directly target the 3′-UTR of KRAS, luciferase reporter assay was conducted in HEK293T cells cotransfected with luciferase reporter vector and miR-337 mimics or miR-NC. Results revealed that upregulation of miR-337 led to a significant decrease in pGL3-KRAS-3′-UTR site 1 Wt and pGL3-KRAS-3′-UTR site 2 Wt luciferase activity in HEK293T cells compared with miR-NC cells (Fig. 3B, P<0.05). Mutation of the two miR-337 binding sites (site 1 Mut or site 2 Mut) restored the normal luciferase activity of KRAS-3′-UTR in HEK293T cells.
To further confirm whether miR-337 can affect the endogenous level of KRAS, miR-337 mimics or miR-NC were transfected into HCT116 and SW480 cells to investigate the mRNA and protein levels of KRAS using RT-qPCR and western blot analysis. Results showed that enforced expression of miR-337 significantly reduced the mRNA (Fig. 3C, P<0.05) and protein (Fig. 3D, P<0.05) levels of KRAS in HCT116 and SW480 cells. Overall, KRAS gene is a direct target of miR-337 in CRC.
miR-337 was inversely correlated with KRAS expression in CRC tissues
To further examine the association between miR-337 and KRAS, we measured KRAS mRNA and protein expression in CRC tissues and normal adjacent tissues using RT-qPCR and western blot analysis. KRAS was dramatically upregulated at both mRNA (Fig. 4A, P<0.05) and protein (Fig. 4B, P<0.05) levels in CRC tissue compared with normal adjacent tissues. Spearman's correlation analysis further demonstrated that miR-337 expression level was negatively correlated with the expression level of KRAS mRNA in CRC tissues (Fig. 4C; r=-0.6648, P<0.0001).
KRAS knockdown recapitulates similar effects to miR-337 overexpression in CRC cells
KRAS was identified as a direct target of miR-337. Therefore, we hypothesised that miR-337 affecting the biological functions of CRC cells might be achieved by KRAS knockdown. To confirm this hypothesis, si-KRAS was used to decrease KRAS expression level in HCT116 and SW480 cells. After transfection, western blot analysis showed that KRAS protein expression was obviously downregulated in HCT116 and SW480 cells transfected with si-KRAS (Fig. 5A, P<0.05). Functional assays demonstrated that KRAS knockdown could repress proliferation (Fig. 5B, P<0.05) and invasion (Fig. 5C, P<0.05) and promoted apoptosis (Fig. 5D, P<0.05) of HCT116 and SW480 cells, which was similar to the effects induced by miR-337 overexpression. The tumour-suppressing effects of miR-337 on CRC cells depends, at least in part, on its direct target KRAS.
Overexpression of KRAS rescued the tumour-suppressive effects of miR-337 in CRC cells
To further evaluate whether KRAS is responsible for the functional roles of miR-337 in CRC, rescue experiments were performed in HCT116 and SW480 cells transfected with miR-337 mimics with or without pCMV-KRAS. Western blot analysis showed that KRAS protein was obviously inhibited by miR-337 overexpression in HCT116 and SW480 cells, whereas upregulation of KRAS by pCMV-KRAS abolished the suppression of KRAS caused by miR-337 mimics (Fig. 6A, P<0.05). Function investigation revealed that upregulation of KRAS reversed the tumour-suppressing effects of miR-337 on CRC cell proliferation (Fig. 6B, P<0.05), invasion (Fig. 6C, P<0.05) and apoptosis (Fig. 6D, P<0.05). miR-337 served as a tumour suppressor in CRC, at least in part, by directly targeting KRAS.
miR-337 inactivates the AKT and ERK signalling pathways in CRC
Previous studies reported that activation of KRAS can trigger several significant pathways, including the AKT and ERK pathways (24,25). Therefore, we measured the protein expression level of p-AKT, AKT, p-ERK and ERK in HCT116 and SW480 cells after transfection with miR-337 mimics or miR-NC. The data of western blot analysis indicated that ectopic expression of miR-337 reduced the p-AKT and p-ERK expression levels and negatively regulated AKT and ERK pathways (Fig. 7). These results suggested that miR-337 exerts tumour-suppressing roles in CRC cells by directly targeting KRAS and indirectly regulating AKT and ERK pathways.
Discussion
Tumour progression and development in CRC is a multi-step process involving a large number of genetic and epigenetic alterations (26,27). Considerable evidence indicates that abnormally expressed miRNAs play critical roles in CRC through regulation of oncogenic and tumour-suppressor genes (28–30). Hence, investigating the function of miRNAs involved in CRC occurrence and development may provide novel therapeutic targets for CRC diagnosis and treatments. In this study, miR-337 was significantly downregulated in CRC tissues and cells. The low expression level of miR-337 was correlated with malignant clinical features of CRC patients, including lymph node metastasis, distant metastasis and TNM stage. In addition, upregulation of miR-337 inhibited cell proliferation and invasion and promoted apoptosis of CRC by directly targeting KRAS and regulating AKT and ERK pathways. These findings suggested that miR-337 could be potentially developed as effective therapeutic target for the therapy of CRC patients.
The abnormal expression of miR-337 has been reported in several kinds of human malignancies. For example, miR-337 was downregulated in gastric cancer tissues and correlated with lymph node metastasis (31,32). In neuroblastoma, miR-337 was expressed at low level in tumour tissues and cell lines. Neuroblastoma patients with high miR-337 expression had greater survival probability than patients with low miR-337 expression levels (19). In pancreatic cancer, the expression level of miR-337 decreased and was related to TNM stage, lymph node status and length of patient survival (20). In addition, low expression level of miR-337 was associated with longer survival in patients with pancreatic cancer (21). miR-337 was downregulated in lung cancer (33), breast cancer (34) and oesophageal squamous cell carcinoma (35). miR-337 may be a diagnostic and prognostic biomarker for these types of cancer.
miR-337 participated in cancer carcinogenesis and progression. For instance, Zheng et al found that expression restoration of miR-337 attenuated gastric cancer cell proliferation, invasion and angiogenesis in vitro (32). Xiang et al revealed that miR-337 overexpression repressed cell growth, metastasis and angiogenesis of neuroblastoma cells both in vitro and in vivo (19). Zhang et al reported that resumption of expression of miR-337 suppressed cell proliferation and invasion of pancreatic ductal adenocarcinoma (20). Du et al showed that miR-337 re-expression sensitised non-small cell lung cancer (NSCLC) cells to paclitaxel and enhanced paclitaxel-induced G2/M arrest (33). These studies suggested a fundamental role for miR-337 in tumourigenesis and development of malignant tumours and illustrate its potential as a therapeutic target for various types of cancer.
Identification of the miR-337 direct targets is important in understanding its roles in NSCLC and is also essential in the development of novel therapeutic strategies for patients with CRC. Several targets of miR-337 have been validated; these targets include MMP14 (19,32) in gastric cancer and neuroblastoma, TGFBR2 (36) in chondrogenesis, HOXB7 (20) in pancreatic cancer and STAT3 (33) and RAP1A (33) in NSCLC. In the present study, KRAS was identified as a direct target of miR-337 in CRC. Firstly, bioinformatic analysis predicted that KRAS was a potential target of miR-337. The luciferase reporter assays indicated that the 3′-UTR of KRAS could be directly targeted by miR-337. Subsequently, RT-qPCR and western blot analysis confirmed that miR-337 negatively regulated KRAS expression in CRC cells at both mRNA and protein levels. Furthermore, KRAS was upregulated in CRC tissues and inversely correlated with miR-337 expression. The biological roles of KRAS knockdown in CRC cells were similar to those induced by miR-337 overexpression. Besides, overexpression of KRAS rescued the tumour-suppressive effects of miR-337 in CRC cells. These results strongly demonstrated that KRAS is a direct and functional target of miR-337 in CRC.
KRAS, which is a member of the Ras family, is located at 12p12.1 and encodes a protein that is a member of the small GTPase superfamily (37). The expression levels of KRAS are overexpressed in an aggregate of human cancers, such as gastric cancer (38), bladder cancer (39), lung cancer (40) and pancreatic cancer (41). In CRC, KRAS was upregulated in tumour tissues compared with normal colorectal mucosa. The expression level of KRAS was correlated with the degree of differentiation of CRC. The average progression-free survival of patients with high KRAS levels was significantly lower than patients with high levels (23). Moreover, abnormal activation of the KRAS was involved in various biological behaviour of cells, including cell proliferation, survival, differentiation, migration, invasion, angiogenesis and apoptosis (42,43). Therefore, KRAS may be developed as a major target for potential CRC therapies and numerous strategies.
In conclusion, miR-337 plays a critical role in the occurrence and development of CRC by directly targeting KRAS and indirectly regulating AKT and ERK pathways, thereby suggesting a theoretical basis for its application in the treatment of patients with CRC.
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