NAMPT: A potential prognostic and therapeutic biomarker in patients with glioblastoma
- Authors:
- Published online on: July 10, 2019 https://doi.org/10.3892/or.2019.7227
- Pages: 963-972
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Copyright: © Guo et al. This is an open access article distributed under the terms of Creative Commons Attribution License.
Abstract
Introduction
Glioblastoma is the most common malignant brain cancer diagnosed in humans, with an average patient survival rate of less than one year after diagnosis (1). Surgical resection followed by a combination of radiation and chemotherapy is the standard treatment for glioblastoma. Although innovative therapeutic strategies have continually been investigated in the past two decades, there are still no effective methods to prevent tumor recurrence. Therefore, it is urgent to explore novel chemotherapeutic targets for glioblastoma.
Nicotinamide phosphoribosyltransferase (NAMPT) is a rate-limiting enzyme in the salvage pathway of nicotinamide adenine dinucleotide (NAD) biosynthesis. NAD is an essential coenzyme involved in cellular redox reactions and is a substrate for NAD-dependent enzymes (2). NAD-dependent enzymes, including histone deacetylases (SirT1-T7), CD38 and poly(ADP-ribose) polymerase (PARP), play an important role in the maintenance of organismal metabolic homeostasis and genomic stability (3–5). Thus, NAD displays a wide range of effects on cell cycle progression, apoptosis, DNA repair, circadian rhythms, regulation of chromatin dynamics, telomerase activity, intracellular calcium mobilization, and transcriptional regulation (6–12). All of these effects are associated with the regulation of tumorigenesis and development. NAMPT is a rate-limiting enzyme for NAD synthesis; therefore, it plays an important role in tumor generation and progression (13–15).
Previous studies have shown that NAMPT expression is significantly elevated in various human malignant tumors, including lymphomas, breast cancer, prostate adenocarcinoma, esophageal cancer, gastric cancer, colorectal adenocarcinoma, ovarian serous adenocarcinoma and glioblastoma (6). Higher NAMPT expression is correlated with deeper tumor invasion, presence of lymph node metastases, advanced clinical TMN stage and shorter patient survival times (16–19). To determine the function of NAMPT in glioblastoma, we searched a database and further performed experiments to explore its role in glioblastoma.
Materials and methods
Oncomine database
The Oncomine database (http://www.oncomine.com) was queried to assess the expression of NAMPT. Set filter conditions included: i. Cancer Type: Glioblastoma; ii. Gene: NAMPT; iii. Data Type: mRNA; iv. Sample Type: Clinical Specimen; v. Analysis Type: Cancer vs. Normal Analysis; vi. Critical setting condition: P-value <1×10−4, fold change >2, gene rank=top 10%.
R2 platform
The Kaplan-Meier survival analysis was performed using the ‘Tumor glioblatoma-TCGA-540 MAS5.0-u133a’ dataset in the Genomics Analysis and Visualization Platform (R2 platform) (https://hgserver1.amc.nl/cgi-bin/r2/main.cgi). The median was used as the threshold to distinguish the high and low expression of NAMPT.
Immunohistochemical microarray analysis
A glioblastoma tissue microarray (US Biomax GL805b) was obtained from GeneChem (Shanghai, China) containing two spots each of tissues from 35 cases of glioblastoma, paracarcinoma tissues from 2 cases (1.5-cm distance from the paracarcinoma tissue to the cancer tissue) and normal neural tissues from 3 cases. A two-step immunohistochemical protocol was used. The primary antibody was an anti-NAMPT rabbit monoclonal antibody (dilution 1:500, cat. no. ab58640; Abcam), and the secondary antibody was from an UltraSensitive SP KIT-9720 (Fujian MXB). Three random high-magnification fields were observed under an optical microscope (Caikon XDS-100, original magnification, ×200).
The immunohistochemical microarray staining was scored on a semiquantitative scale by assessing the intensity and proportion of staining. The staining intensity was scored using the following scale: 0 (negative), 1 (weak), 2 (moderate), and 3 (strong). According to the positive rate of staining, the proportion of staining was scored as 0 (0–4%), 1 (5–25%), 2 (26–50%), 3 (51–75%), or 4 (76–100%). The total score was calculated by multiplying the proportion score and the intensity score. Specimens with a total score of ≤6 were assigned to the low-expression group. Specimens with a total score of >6 were assigned to the high-expression group.
Gene set enrichment analysis (GSEA)
GBM gene expression profile was downloaded from The Cancer Genome Atlas (TCGA) database (https://www.cancer.gov/tcga). The queue were divided into NAMPT high and low expression groups according to the median expression of NAMPT. Gene set enrichment analysis was performed using the GSEA software, version 2.0.1, obtained from the Broad Institute (http://www.broad.mit.edu/gsea). Gene set permutations were performed 1,000 times for each analysis. Family error rate (FWER) and false discovery rate (FDR) were used to screen the enriched pathways in each group.
Cell lines and cell culture
The human glioblastoma cell lines, U87 and U251, were obtained from the American Type Culture Collection (ATCC). STR profiling indicated that the U87 was a probable glioblastoma of unknown origin. These cell lines were cultured with Corning® DMEM medium (Corning Inc.) containing 10% FBS. Cell lines were cultured at 37°C in a humidified atmosphere of 5% CO2.
NAMPT shRNA design and lentivirus construction
A small hairpin RNA (shRNA) targeting NAMPT with high specificity was designed and synthesized by GeneChem (Shanghai, China) and cloned into a lentiviral vector (GeneChem), which also encoded green fluorescent protein (GFP). Then, the lentivirus expressing NAMPT shRNA (LV-NAMPT-RNAi) was prepared and collected. The NAMPT shRNA sequence was as follows: 5′-AACTTAGATGGTCTGGAAT-3′. A scrambled shRNA sequence was used as the negative control: 5′-TTCTCCGAACGTGTCACGT-3′.
Lentivirus infection
The human glioblastoma cell lines U87 and U251 were used for lentivirus infection. Briefly, cells in the logarithmic phase were digested by trypsinase. A 4×104/ml cell suspension was prepared, and 1 ml of the cell suspension was inoculated into a 12-well plate. When the cell confluence was 20%, the appropriate lentiviral particle solution containing the lentivirus expressing either NAMPT or the scrambled shRNA was added to the target plate (MOI=5). The infection efficiency was determined by the GFP expression status as observed with a fluorescence microscope (Olympus Corp., Tokyo, Japan) 72 h after infection.
Quantitative real-time PCR (qPCR)
Total RNA was extracted and reverse transcribed. The resulting cDNA was used as the template for RT-PCR using a standard SYBR Green PCR kit (Takara) in a LightCycler 480 Real-Time PCR machine (Roche). Independent experiments were conducted in triplicate. GAPDH served as the internal control. Gene expression was calculated using the ΔΔCq method (20).
Western blot analysis
Cell lysates were prepared in ice-cold RIPA lysis buffer. Total protein concentration was determined using an enhanced BCA protein assay kit. An amount of 30 µg of total protein per lane was separated by 10% SDS-PAGE, transblotted onto PVDF membranes, which were then blocked with 5% milk dissolved in TBST for 1 h at room temperature and incubated overnight with primary antibodies at 4°C. The primary antibodies used were as follows: Rabbit anti-NAMPT (cat. no. ab58640; dilution 1:500; Abcam), mouse anti-GAPDH (cat. no. ab8245; dilution 1:3,000; Abcam). Then the blots were incubated with anti-rabbit (cat. no. ab205718; dilution 1:5,000; Abcam) or anti-mouse (cat. no. ab205719; dilution 1:5,000; Abcam) HRP-labeled secondary antibody at room temperature for 1.5 h. The immunoactivity was detected using an ECL-Plus kit (Thermo Fisher Scientific. Inc.). The immunoreactive bands were quantified by densitometry with ImageJ software (National Institutes of Health, Bethesda, MD, USA).
CCK-8 assay
Cells at a density of 2,000 cells/well in logarithmic phase were cultured in 96-well culture plates. A 10-µl volume of CCK-8 reagent (Sigma-Aldrich; Merck KGaA) was added at various time points (24, 48, 72, 96 and 120 h). After cells were cultured for 4 h, the absorbance of the plates was read at a wavelength of 450 nm using a microplate reader (M2009PR; Tecan Infinite). The experiment was repeated five times.
Colony formation assay
Three days after infection with the lentivirus, cells were seeded at a density of 800 cells per well in 6-well plates with triplicate wells for each group. Cell colonies were grown in a humidified 5% CO2 incubator at 37°C for 16 days. Images were acquired with an inverted microscope at ×100 magnification. Then, cells were fixed, stained with Giemsa solution and imaged. Colonies measuring 0.3 mm or more were counted.
Wound healing assay
Cells at a density of 50,000 cells/well were seeded in 96-well wounding replicator and grown to over 90% confluence. Then the culture medium was replaced with 0.5% FBS. Wounds were generated using the tip with 200 µm width of a wounding replicator, VP scientific, VP408FH. Cells were incubated for up to 24 h. Wound closure was observed at 0, 8 and 24 h post scratching. These assays were performed with three independent replicates. Cell images were acquired with an inverted microscope (Caikon XDS-100, original magnification, ×10). The migration rate was calculated as follows: Migration rate=[(width of wound at 0 h-width of wound at the time point tested)/width of wound at 0 h] ×100%.
Transwell chamber assay
A Corning invasion kit was used to perform this assay according to the manufacturer's instructions. Cell suspensions (105 cells per well in a 24-well culture plate) in FBS-free DMEM were added to the top chamber, and DMEM containing 30% FBS was added to the bottom chamber. Cells that migrated through the filter were stained with Giemsa. Images of the migrated cells were captured with a digital camera connected to an inverted microscope (Caikon XDS-100). Five random fields of vision at ×100 magnification and 9 random fields of vision at ×200 magnification were observed per well. The migrated cells were counted in the ×200 images. The invasion assay was carried out with three independent replicates.
In vivo tumorigenesis in nude mice
The first step was to prepare tumor-forming cells according to the method described above. U87 cells infected with a lentiviral vector expressing NAMPT-shRNA and GFP sequences were generated as the knockdown (KD) group; cells infected with lentiviral vector expressing scrambled shRNA and GFP sequences were generated as the negative control (NC) group. Mice were randomized into the two groups. BALB/c nude mice (male, 4 weeks old, ~20 g) were purchased from the HUST Animal Center, Wuhan, China. They were maintained in a constant temperature, humidity, sterile environment and routinely fed with food and water according to the national regulations. A total of 1×107 logarithmically growing U87 cells in 0.1 ml of PBS were subcutaneously injected into the right flank of the mice, 10 mice in each group. According to the Institutional Animal Care and Use Committees (IUCUC) protocol (AN-5803), the maximal allowable size of the tumours could not exceed 10% of mouse body weight. Tumor volumes were measured every four days after injection with a caliper and calculated using the formula V=π/6 (lxwxw), where l is the length and w is the width. Forty days after injection, animals were anesthetized using an intraperitoneal injection of 150 mg/kg pentobarbital sodium. Tumor tissues were excised and weighed. Immunohistochemical staining of Ki-67 and CD31 was performed on the transplanted tumors, and the Ki-67 index and microvascular density (MVD) were calculated. All animal experiments were approved by the Institutional Animal Care and Use Committee of Huazhong University of Science and Technology.
Statistical analysis
Data are expressed as the means ± standard errors of the mean. Student's t-test was used to compare the data between two groups. The data between three groups were compared by ANOVA, and then Tukey test was used to compare the data between the two groups if P<0.05. P<0.05 was considered to indicate a statistically significant difference.
Results
NAMPT is overexpressed in glioblastoma and correlated with poor overall survival
Six studies in the Oncomine database, comprising a total of 942 samples, met the criteria (21–25). Meta-analysis of the 6 studies showed that NAMPT was statistically overexpressed in glioblastoma relative to its expression in normal neural tissue (P=1.68E-7) (Fig. 1A). Immunohistochemical microarray analysis showed that NAMPT was mainly localized in the cytoplasm (Fig. 1C-E). The average total staining scores of the glioblastoma and nontumor tissues (paracarcinoma and normal neural tissues) were 7.54 and 4.600, respectively (P=0.000637). These results suggest that the expression of NAMPT in human glioblastoma is higher than that in normal tissues.
Data from the R2 platform (540 glioblastoma samples) showed that patients with higher NAMPT expression had a lower overall survival rate than patients with lower NAMPT expression. The 2-year survival rates were 4 and 1% for the high- and low-expression groups, respectively (P=0.0063) (Fig. 1B).
Biological pathways enriched in the NAMPT high-expression phenotype as obtained by gene set enrichment analysis (GSEA)
Gene set enrichment analysis (GSEA) was performed using data from the TCGA GBM cohort comprising 169 samples. The expression level of NAMPT was used as the phenotype label. A pathway was classified as enriched by setting the FWER P-value to <0.01 and the FDR to <0.05. The ‘GO acute inflammatory response’, ‘positive regulation of I-κB kinase NF-κB signaling’, ‘I-κB kinase NF-κB signaling’, and ‘acute phase response’ pathways were enriched in the NAMPT high-expression phenotype (Fig. 1F). Therefore, NAMPT may play a role via these pathways.
A lentiviral-based shRNA strategy is successfully used to inhibit NAMPT expression in GBM cells
A lentiviral vector expressing both shRNA targeting human NAMPT and the GFP sequence was used to establish knockdown (KD) cells, while a lentiviral vector expressing both scrambled shRNA and the GFP sequence was used to establish negative control (NC) cells in the U87 and U251 cell lines. Cells without lentivirus infection were considered blank control (CON) cells. GFP expression was observed in more than 90% of cells infected with the lentivirus 72 h after infection (Fig. 2A and B).
RT-PCR and western blot analysis were performed to assess the knockdown efficiency. RT-PCR results showed that NAMPT-shRNA was effective in both U251 and U87 GBM cells, with a knockdown efficiency of approximately 74.9% in U87 GBM cells (Fig. 2C) and 87.7% in U251 GBM cells (Fig. 2D). The location (Fig. 2E) and quantification (Fig. 2F) of the western blot band further confirmed the above results.
NAMPT knockdown inhibits cell proliferation and colony formation in GBM cells
The CCK-8 assay showed that the proliferation of cells in the KD group was significantly inhibited at the 4 and 5 days in U87 and U251 GBM cells (P<0.001 KD vs. NC for both cell lines) (Fig. 3A and B).
The soft agar colony formation assay showed that in the KD, NC and CON groups of U87 and U251 GBM cells the average colony numbers were 19, 27 and 40 and 6, 51 and 88, respectively (P<0.05 KD vs. NC for both cell lines) (Fig. 3C and D).
NAMPT knockdown inhibits cell migration and invasion and induces apoptosis in the GBM cell lines
As shown by the wound healing assay in U87 cells, the migration rates of KD cells at 8 and 24 h were 0.14±0.08 and 0.4±0.06, respectively, lower than those of the CON group (0.21±0.08 and 0.64±0.05) and NC (0.19±0.07 and 0.54±0.07) cells (Fig. 4A and B).
The Transwell assay showed that the average numbers of migrated cells in the KD, NC and CON groups were 56±5.55, 101±3.88 and 106±3.74 in the U87 cells and 16±0.44, 107±5.00 and 116±2.92 in the U251 cells, respectively (P<0.001, KD vs. NC and CON) (Fig. 4C and D).
The apoptosis assay showed that the percentage of apoptotic U87 GBM cells in the KD group was 7.68±0.3386%, which was higher than that in the NC group (3.74±0.3103%) (P<0.001). Similarly, the percentage of apoptotic U251 GBM cells in the KD group was 7.43±0.4921%, which was also higher than that in the NC group (3.88±0.3553%, P<0.001) (Fig. 4E-G).
NAMPT knockdown inhibits the growth of transplanted U87 GBM cells in nude mice
The growth curve of subcutaneously transplanted tumors in nude mice showed that tumors derived from the KD cells grew much more slowly than those derived from the NC tumors. Forty days after inoculation, the maximum diameter of the KD and NC transplanted tumors were 11.40 and 18.50 mm, the maximum weights of the KD and NC tumors were 0.643 and 1.049 g, respectively. The average weights of the KD and NC transplanted tumors were 0.269±0.244 and 0.788±0.186 g, respectively (P<0.0001) (Fig. 5A-C).
The Ki-67 indices of the KD and NC tumors was 17.7±3.1 and 55.3±8.2%, and the MVD in the KD and NC tumors was 15.9±2.8 and 28.2±5.4, respectively. These results suggest that NAMPT knockdown inhibits the growth and microvessel formation of U87 glioblastoma xenografts in nude mice (Fig. 5D-F).
Discussion
Manyprevious studies have reported that NAMPT expression is increased in human malignant tumors and that high expression of NAMPT is associated with advanced tumor stage and reduced patient survival time (6,16–19). Hufton et al (26) reported that NAMPT expression was 6-fold higher than that in benign tissues. Olesen et al (18) found that NAMPT was overexpressed in blood diseases and was associated with more aggressive phenotypes of malignant lymphoma. Nakajima et al (27,28) reported that NAMPT may be a useful biomarker for predicting the progression of gastric and colorectal cancer. Maldi et al (16) reported that NAMPT promoted the growth, metastasis and dedifferentiation of melanoma cells. Gujar et al demonstrated that NAMPT is highly expressed in glioblastoma tumors and patient-derived glioblastoma stem-like cells (GSCs), and NAMPT knockdown inhibited the in vivo tumorigenicity of GSCs (29). To further study the effect of NAMPT on glioblastoma, we performed a series of studies. First, we searched the Oncomine database and found that NAMPT was statistically overexpressed in glioblastoma tissues relative to its expression in normal neural tissues. Then, using the R2 platform, we found that high expression of NAMPT was associated with poor prognosis in glioblastoma. Next, we carefully selected a glioblastoma tissue microarray containing tissues from 35 cases (each with two spots). The microarray analysis results indicated that the expression of NAMPT in glioblastoma was higher than that in normal neutral tissue. In conclusion, we believe that NAMPT is overexpressed in glioblastoma and that high NAMPT expression is associated with poor prognosis in glioblastoma.
Inhibition of NAMPT expression by small-molecule inhibitors or gene knockdown has demonstrated antitumor effects both in vitro and in vivo (30–33). Wang et al discovered that inhibition of NAMPT expression in prostate cancer cells suppressed growth and invasion in vitro and the growth of tumor xenografts in vivo (33). Yang et al (34) generated fibrosarcoma HT1080 and 293 cells with stable knockdown of NAMPT using siRNA. The stable cells with knockdown of NAMPT expression were more sensitive to etoposide and had increased levels of cleaved caspase 3 than the corresponding parental cells. Jung et al reported that NAD metabolism regulates glioblastoma stem cell maintenance (35). To explore whether NAMPT has an influence on glioblastoma cells, we performed several cytological and animal experiments. We used a lentivirus expressing NAMPT-shRNA to knock down NAMPT expression in two human glioblastoma cell lines, U87 and U251, and confirmed the knockdown effectiveness by RT-PCR and western blotting. Then, we performed CCK-8 and soft agar assays and observed that cell proliferation was inhibited by NAMPT knockdown. In addition, apoptosis analysis showed that NAMPT knockdown induced apoptosis. The wound healing and Transwell assays showed that cell migration and invasion were decreased by NAMPT knockdown. Our data confirmed that NAMPT knockdown markedly inhibited cell proliferation, migration and invasion and induced apoptosis in U87 and U251 GBM cell lines. To further confirm our conclusion in vivo, we established a subcutaneous xenograft model in nude mice. The growth of xenografts was significantly slowed by NAMPT knockdown. Immunohistochemical staining of xenografts showed that the Ki-67 index and microvessel density (MVD) of NAMPT knockdown tumors were lower than those of negative control tumors. These results showed that NAMPT knockdown exerts a significant inhibitory effect on the tumorigenesis of GBM cells in vitro and in vivo.
The exact molecular mechanism by which NAMPT regulates glioblastoma generation and progression is complicated and remains unclear. Studies have shown that NAMPT may perform its function through NAD, which is an essential cofactor involved in cellular redox reactions and a substrate for NAD-dependent enzymes such as poly(ADP-ribose) polymerases (PARPs), sirtuins, and cyclic ADP (cADP) ribose synthases. PARP-1 is an important regulator of cell stress and responses to DNA damage. Venkateshaiah et al found that NAMPT inhibition lowers cellular PARP-1 activity and cell viability in myeloma cells (36). Sirtuin1 can attenuate p53, PTEN, and retinoblastoma protein activity; stabilize N-Myc; promote epithelial-to-mesenchymal transition; and increase cell migration (17). Revollo et al found that increased NAMPT expression increases cellular NAD levels and enhanced Sirtuin1-mediated transcription in murine cells (37). Our GSEA results indicated that the GO terms ‘acute inflammatory response’, ‘positive regulation of IκB kinase NF-κB signaling’, ‘IκB kinase NF-κB signaling’, and ‘acute phase response’ were enriched in the NAMPT high-expression phenotype. Therefore, we deduced that NAMPT may play its role through these pathways. However, we have not experimentally verified the specific role and mechanism of NAMPT in these pathways, which may be one of our next research directions.
In summary, our study demonstrated that NAMPT is significantly overexpressed in glioblastoma tissues and that high NAMPT expression indicates worse prognosis. In vitro and in vivo experiments showed that NAMPT knockdown reduced cell proliferation, migration, and invasion and induced apoptosis. Therefore, NAMPT may be considered an oncogene in glioblastoma and may be a potential prognostic and therapeutic target for glioblastoma. In the future, we may further study the antitumor mechanism of NAMPT through four pathways derived from the GSEA analysis, and ascertain whether NAMPT knockdown or NAMPT inhibitors combined with chemotherapy, radiotherapy or targeted drugs can play an unexpected antitumor role in glioblastoma.
Acknowledgements
Not applicable.
Funding
This study was funded by the National Natural Science Foundation (grant no. 1772680).
Availability of data and materials
The datasets used and/or analyzed during the current study are available from the corresponding author on reasonable request.
Authors' contributions
QG performed the cell biology and animal experiments and wrote the manuscript. MZ conducted the cell biology and animal experiments, and managed the project. NH performed the bioinformatic data analysis and contributed to the project management. LS contributed to the management of the project and performed the cell biology experiments. LY contributed to the animal experiments and project management. XZ helped conduct the cell biology experiments and modify the manuscript. YZ contributed to the cell biology experiments and modified the manuscript. SY contributed to the animal experiments and managed the project. All authors read and approved the final manuscript and agreed to be accountable for all aspects of the work in ensuring that questions related to the accuracy or integrity of any part of the work are appropriately investigated and resolved.
Ethics approval and consent to participate
The animal experiments in the present study were approved by the Ethics Committee for Animal Experimentation of Genechem (no. GSZE0116844).
Patient consent for publication
Not applicable.
Competing interests
The authors declare that they have no competing interests.
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