Identification of ITGB4 as a novel tumor promoting gene in lung adenocarcinoma (LUAD)
- Authors:
- Published online on: December 20, 2023 https://doi.org/10.3892/or.2023.8689
- Article Number: 30
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Copyright: © Lu et al. This is an open access article distributed under the terms of Creative Commons Attribution License.
Abstract
Introduction
Lung cancer (LC) is the most frequently diagnosed cancer, is the most common cause of cancer-related death worldwide and has a low five-year overall survival rate (1,2). In total, ~85% of patients with LC have non-small cell LC (NSCLC), of which ~50% are lung adenocarcinoma (LUAD) (3,4). Owing to the lack of effective early diagnosis methods, patients with LUAD are often diagnosed late and thus miss the optimal time for disease intervention, leading to high morbidity and mortality rates (5). Therefore, the discovery of new premonitory biomarkers and remedial goals for this disease is urgently needed.
Integrins, a type of transmembrane connector, form a bidirectional connection between the extracellular matrix and intracellular actin skeleton. Integrins can promote cells to give feedback to the external milieu (6), including during proliferation, differentiation and migration (7). According to previous studies, there are 24 different heterodimers of integrins (8,9). Integrin subunit β4 (ITGB4), a laminin-5 receptor, is a widely-studied integrin, and its effects on tumor progression have attracted attention (10). ITGB4 was reported to participate in tumor cachexia in glioma following in vitro and animal experiments (11). Moreover, it was demonstrated that ITGB4 expression was upregulated in hepatocellular carcinoma (HCC) tumor samples, compared with adjacent non-tumor tissues. Following suppression of ITGB4 expression, the proliferation, colony-forming ability and invasiveness of HCC cells were reduced (12). In NSCLC, the ITGA6/B4 heterodimer interacts directly with the receptor tyrosine kinase, MET, to promote tumor invasion (13,14). Previously, a systematic bioinformatic analysis of NSCLC was performed using a series of databases and it was found that ITGB4 was aberrantly expressed in NSCLC, suggesting its potential significance in this disease (15). However, the expression pattern of ITGB4 and how it exerts its role remains unclear.
In the present study, ITGB4 was identified as an important hub gene in the initiation and development of LUAD using online data and patient tissue samples. The roles of ITGB4 in A549 and PC9 cells (two LUAD cell lines) were explored and it was found that downregulation of ITGB4 attenuated LUAD cell proliferation, promoted cell apoptosis and inhibited colony formation, migration and invasion. ITGB4 mechanisms were also preliminarily explored using high throughput sequencing. The findings of the present study highlighted the oncogenic function of ITGB4 in LUAD and uncovered the fundamental scheme underlying progression of this disease.
Materials and methods
Patient enrolment
In the present study, 18 LUAD and adjacent normal tissues were obtained surgically from April 2023 to May 2023, which included 10 men and 8 women, with an age range of 58 to 77 years. Inclusion criteria for patients were as follows: i) Individuals diagnosed with LUAD, excluding other forms of lung cancer; ii) patients confirmed through pathological examinations; and iii) individuals willing to actively participate. Exclusion criteria for patients were as follows: i) Individuals with additional health conditions, including chronic diseases; and ii) patients unable to cooperate effectively with researchers. Written consent from all participants involved in the study was acquired. All experiments involving human subjects were carried out in The First Affiliated Hospital of Anhui Medical University. Protocols involving the obtained tissues were approved (approval no. Quick-PJ 2023-04-36, Hefei, China) by The Medical Ethical Committee of The First Affiliated Hospital of Anhui Medical University.
Microarray experiments and data processing
To screen for critical genes that may be involved in LUAD progression, three paired human LUAD tissues were collected for microarray experiments. ITGB4-knocked down A549 cells were also used for microarray experiments to explore downstream signaling pathways. All microarrays were performed using Affymetrix U133 Plus 2.0 arrays (Novogene Co., Ltd.). The kits used were RNA-Quick Purification Kit (cat. no. RN001; EZBioscience) and NovoScript®Plus All-in-one 1st Strand cDNA Synthesis SuperMix (gDNA Purge) (cat. no. E047; Novoprotein).
Screening for differentially expressed genes (DEGs)
Data were normalized (16) and DEGs between NSCLC and adjacent normal tissues were analyzed using the limma package (http://www.bioconductor.org/). The following criteria were used to determine significant DEGs: Fold change ≥2 or ≤0.5 and P<0.05.
Bioinformatics analysis
The ITGB4 expression pattern in LUAD in The Cancer Genome Atlas (TCGA) dataset, TCGA-LUAD, was obtained through the GEPIA2 online tool (http://gepia2.cancer-pku.cn/#index, accession number: LUAD-TCGA). Pan-cancer analysis was also conducted using the GEPIA2 online tool. In the prognostic analysis, the prognostic data were downloaded from cBioPortal for Cancer Genomics website [datasets: Lung Adenocarcinoma (TCGA, Firehose Legacy) and Lung Adenocarcinoma (MSK, 2021)]. The ITGB4 median expression level was used as the cut-off, with patients with expression levels above the median assigned to the high expression group and patients with expression levels below the median assigned to the low expression group. The prognosis between the different groups was then evaluated using the Kaplan-Meier method and the log-rank test. P<0.05 was considered to indicate a statistically significant difference. Online immunohistochemistry (IHC) data were obtained directly from the Human Protein Atlas (HPA) database (www.proteinatlas.org/). UALCAN was used to obtain the presentation data and survival information of the TCGA-LUAD dataset (17). Furthermore, ITGB4 expression was analyzed using the ONCOMINE database (18,19). Kyoto Encyclopedia of Genes and Genomes (KEGG; http://www.genome.jp/eg/) and Reactome pathway analyses, involving commentary, visualization and integrated discovery, were also conducted (https://reactome.org/). The analysis of protein-protein interactions (PPI) and modules was conducted using the STRING (Search Tool for the Retrieval of Interacting Genes) database. The current approach involved uploading the list of DEGs to the STRING website (www.string-db.org/) to assess protein interactions, where interactions with an experimentally validated score exceeding 0.4 were considered significant. For module and hub gene identification, Cytoscape (version 3.9.0; http://cytoscape.org/) software with molecular complex detection (MCODE) criteria (score >3 and nodes >4) was employed.
Cell culture
The human LUAD cell lines, A549 and PC9, were purchased from The Cell Bank of Type Culture Collection of the Chinese Academy of Sciences. These cells were respectively cultured in Ham's F-12K medium and Dulbecco's Modified Eagle Medium with 10% fetal bovine serum (FBS; all from Wuhan Servicebio Technology Co., Ltd.) and 1% penicillin and streptomycin, in a humidified atmosphere at 37°C with 5% CO2.
RNA extraction and reverse transcription-quantitative polymerase chain reaction (RT-qPCR)
Total RNA was obtained using TRIzol® reagent (Invitrogen; Thermo Fisher Scientific, Inc.). cDNA synthesis was then conducted using a PrimeScript™ RT reagent kit (Takara Bio, Inc.) according to the manufacturer's instructions. The thermocycling conditions for qPCR were as follows: Initial denaturation (95°C for 60 sec), then the 40 cycling steps (95°C for 20 sec, annealing for 20 sec at 60°C, and extension at 72°C for 30 sec). TB Green® Fast qPCR Mix (Takara Bio, Inc.) was then used to quantify the ITGB4 and GAPDH (internal control) expression levels. The primers used in the qPCR were as follows: GAPDH forward, 5′-AGCCACATCGCTCAGACAC-3′ and reverse, 5′-GCCCAATACGACCAAATCC-3′; and ITGB4 forward, 5′-GCAGATCTCCGGTGTACACAAG-3′ and reverse, 5′-GCTTTTTCCCGGCATTGG-3′. mRNA expression was quantified using the 2−ΔΔCq method (20).
IHC
IHC was conducted in accordance with standard laboratory protocols. In short, the paraffin-embedded tissue sections (5 µm) were deparaffinized using xylene and hydrated in an ethanol gradient. The sections were then incubated in 3% BSA (cat. no. A9647; Sigma-Aldrich; Merck KGaA) blocking solution, with gentle shaking at 37°C for 30 min. Then, the sections were incubated with rabbit monoclonal antibody against ITGB4 (1:300; cat. no. 14803; Cell Signaling Technology, Inc.) for 1 h, followed by the HRP-conjugated secondary antibody (1:10,000; cat. no. ab205718; Abcam) working solution at 37°C for 30 min. After further dehydration, the slices were sealed with neutral gum. Microscopic examination was performed, and images were acquired. ITGB4 staining was then scored by two independent observers (including one pathologist) to determine the expression levels. A positive reaction was scored using four graded categories, depending on the intensity of the staining and the percentage of positively stained cells. The sum of the intensity and percentage scores determined the final score.
RNA interference (RNAi) and transfection
RNAi in A549 and PC9 cell lines was performed using Lipofectamine® 2000 (Invitrogen; Thermo Fisher Scientific, Inc.) as the transfection reagent. The sequences of the small interfering (si)RNAs (Sangon Biotech Co., Ltd.) used were as follows: siITGB4#1 sense, 5′-CCACAGAGCUGGUGCCCUATT-3′ and antisense, 5′-UAGGGCACCAGCUCUGUGGTT-3′; siITGB4#2 sense, 5′-CAGAGAAGCAGGUGGAACATT-3′ and antisense, 5′-UGUUCCACCUGCUUCUCUGTT-3′; and si-NC sense, 5′-UUCUCCGAACGUGUCACGUTT-3′ and antisense, 5′-ACGUGACACGUUCGGAGAATT-3′. The concentration of siRNA used was 20 µM. The duration of siRNA transfection was 48 h at 37°C and subsequent experiments were performed immediately after transfection. Western blot analysis and RT-qPCR were conducted to verify successful transfection of siRNA.
Cell proliferation, colony formation and apoptosis assays
Cell Counting Kit-8 (CCK-8) was used to detect cell proliferation. In short, cells were carefully placed at a density of 2×104 cells per well (0.1 ml) in 96-well plates and allowed to incubate overnight at 37°C. The number of adherent ITGB4-knocked down LUAD cells was calculated at 0, 24, 48 and 72 h using 10 µl of CCK-8 (cat. no. C0037; Beyotime Institute of Biotechnology) and incubated for 1 h at 37°C. The number of cells was then determined using a micro titer plate reader at 450 nm wavelength. To assess the colony formation ability, cells were diluted to 500 cells/well in a 6-well plate. After 10 days, the resulting colonies were stained using a 0.1% crystal violet staining solution (Sangon Biotech Co., Ltd.). The minimum number of cells forming a colony was 50 cells and ImageJ software (version: 1.42q; National Institutes of Health) was used to quantify colonies. An Annexin V-FITC Apoptosis Detection kit (cat. no. CA1020; Beijing Solarbio Science & Technology Co., Ltd.) combined with flow cytometry (model, FC500; Beckman Coulter, Inc.; analysis software, FlowJo 10; FlowJo LLC) and Hoechst staining (cat. no. C0003; Beyotime Institute of Biotechnology; cells were stained for 5 min in room temperature) were performed to detect cell apoptosis.
Migration and invasion assays
The invasion and migration abilities of the cells were measured using Transwell inserts (8 µm) with or without Matrigel, respectively. The plates were precoated with Matrigel at 4°C. After coating, they were incubated at 37°C for 3 h. A total of 5×104 cells/well were seeded into the upper chambers of the inserts and 500 µl culture medium containing 20% FBS was added to the lower chambers. After 48 h of incubation at 37°C, the non-invasive cells were carefully wiped away using a cotton-tipped gauze, whereas the invasive cells were stained using 0.1% crystal violet staining solution (Sangon Biotech Co., Ltd.) for 2 h at room temperature. Images of five randomly selected fields were captured by an inverted light microscope (Olympus Corporation) and the number of migratory or invasive cells was calculated.
Wound healing assays
Cells at a density of 1×105 cells/well were transfected with the relevant siRNA. Once the cells adhered to the plate, a wound was made by scratching the cells with a micropipette tip. All cells were serum-starved (no FBS) during the wound healing assay. Images of the wound were then recorded using a light microscope at 0 or 24 h after wounding.
In vivo tumor growth assays
A total of 14 female NOD/SCID mice (6 weeks-old; weight 28–22 g) were purchased from the Animal Center of Shanghai. Mice were kept in an SPF animal room with a constant temperature of 25°C, a relative humidity of 40–70%, a 12/12-h light/dark cycle and free access to food and water. Mice were subcutaneously injected on the back with cells (106 cells in 100 µl PBS) to produce xenograft tumors in Hefei Normal University. Tumor growth was monitored every 3 days before the tumor could be detected. After that, the tumor growth was monitored every day when the tumor could be detected. In the followed protocol, if the tumor weight in mice reached 10% of the body weight, or the size of the tumor in any dimension exceeded 15 mm, all the mice would be euthanized. If not, the mice would be sacrificed 54 days after cell injection. After 54 days, all the 14 mice were euthanized using CO2 (35% vol/min) asphyxiation in chamber (630×480×500 mm). The mice were exposed to CO2 for at least 1 additional min after breathing ceased. The methods for confirming animal death included: Cessation of heartbeat, cessation of breathing, stiffness in the animal and dilated pupils. The tumor volumes were calculated as previously reported (21). The protocol was approved (approval no. HFNU-2023-TK61-1,) by The Medical Ethical Committee of Hefei Normal University (Hefei, China), and followed the principles outlined in the Declaration of Helsinki (2013) for all human or animal experimental investigations. All animal welfare considerations were taken to minimize suffering and distress. The tumor weight in mice should not exceed 10% of the body weight, and the size of the tumor in any dimension should not exceed 15 mm.
Immunoblotting
Cells were lysed using RIPA protein extraction buffer (cat. no. P0013B) with PSMF (cat. no. ST505; Beyotime Institute of Biotechnology) and 1X SDS loading buffer. Protein concentration was determined using bicinchoninic acid (BCA) method. A total of 20 µg protein was loaded per lane. The proteins were transferred to polyvinylidene difluoride (PVDF) membrane. Blocking was conducted using QuickBlock™ blocking buffer (cat. no. P0252; Beyotime Institute of Biotechnology) for 15 min at room temperature. TBST with 1% Tween 20 was used for washing. The membrane was incubated at 4°C overnight with the following primary antibodies: anti-ITGB4 antibody (1:1,000; cat. no. 14803) and anti-GAPDH (1:1,000; cat. no. 2118; both from Cell Signaling Technology, Inc.). Subsequently, membranes were incubated at room temperature for 2 h with HRP-conjugated anti-rabbit IgG secondary antibody (1:5,000; cat. no. 7074; Cell Signaling Technology, Inc.). Protein bands were visualized using a ChemiDoc XRS chemiluminescence detection and imaging system (Bio-Rad Laboratories, Inc.).
Statistical analysis
Data were analyzed using SPSS v20 software (IBM Corp.). The results were presented as the mean ± standard deviation. Student's paired t-test was used for RT-qPCR, CCK-8, migration and invasion analyses. Survival curves were plotted from the date of operation using the Kaplan-Meier method and were compared using the log-rank test. P<0.05 was considered to indicate a statistically significant difference.
Results
ITGB4 is a critical hub gene in LUAD
In microarray experiments using the collected human LUAD tissues, 167 DEGs were identified (Table SI), among which 164 DEGs were upregulated and three were downregulated (Fig. 1A and B, Table SII). Furthermore, the 167 DEGs were analyzed using UALCAN and it was found that 14 genes were associated with poor survival (P<0.01; Table I). Then, the interactions between the DEGs were studied and the top 20 identified genes were ranked by interaction level through protein-protein interaction network analysis using STRING website and Cytoscape software (Figs. 1C and S1). In addition, 1,028 genes upregulated in LUAD tissues were identified using data from TCGA dataset (Fig. 1C). After integrated bioinformatical analysis, only three genes, ITGB4, B3GNT3 and CDKN2A, were identified from the aforementioned lists (Fig. 1D). ITGB4 was selected for further study due to its importance in LUAD pathophysiology with rare mechanistical study (15).
ITGB4 is upregulated in tumor tissues and is associated with poor survival in a pan-cancer analysis
To further understand the role of ITGB4 in cancer development, a pan-cancer analysis was first conducted. The difference in ITGB4 expression between tumor and adjacent normal tissues in different tumor types was explored using TCGA database. It was found that ITGB4 was markedly upregulated in multiple types of cancer tissues, including LUAD (Fig. 2A). The same result was also obtained following analysis using the ONCOMINE database (Fig. 2B). In the prognostic analysis, the cases were divided into high and low expression groups according to the ITGB4 expression level. The results indicated that a high ITGB4 expression level was associated with poor overall survival for adrenocortical carcinoma, kidney renal clear cell carcinoma (KIRC), low grade glioma (LGG) and LUAD (Fig. 2C). It was also identified that high ITGB4 expression was associated with poor disease-free survival for KIRC, LGG and LUAD (Fig. 2D). These data indicated the possible oncogenic role of ITGB4.
ITGB4 is upregulated in LUAD tissues and is associated with poor survival
Next, the role of IGTB4 in LUAD was focused on. The copy number and mRNA expression level of ITGB4 in LUAD was analyzed and it was revealed that gain and amplification significantly promoted ITGB4 expression (Fig. 3A). Data from TCGA (Fig. 3B) and HPA (Fig. 3C) online datasets confirmed the upregulated ITGB4 mRNA and protein expression levels in LUAD. In prognostic analyses, it was found that elevated ITGB4 expression predicted an adverse clinical outcome in LUAD (Fig. 3D), which also suggested the oncogenic role of ITGB4 in LUAD. Moreover, these results were validated using the collected LUAD tissues. The results of the RT-qPCR analysis suggested that ITGB4 expression was significantly higher in LUAD tissues (Fig. 3E), which was also confirmed by IHC (Fig. 3F).
Knockdown of ITGB4 expression suppresses proliferation and migration and promotes apoptosis of LUAD cells
To further confirm the oncogenic role and improve understanding of its biological function, the expression of ITGB4 was knocked down in A549 and PC9 cells using specific siRNAs. The transfection results demonstrated that the two siRNAs (siITGB4#1 and #2) significantly decreased the ITGB4 expression level (Figs. 4A and S2A). Downregulated ITGB4 expression also significantly restrained A549 and PC9 cell proliferation (Fig. 4B) and colony formation (Fig. 4C). Beyond the in vitro experiments, an in vivo tumorigenesis nude mouse model was also constructed. It was found that the tumor volume of the ITGB4-knocked down cells group was significantly smaller than that of the control group (Fig. 4D). Moreover, apoptosis assays demonstrated that ITGB4 knockdown also induced cell apoptosis (Figs. 4E and S2B). Wound healing and Transwell assays indicated that ITGB4 downregulation markedly inhibited LUAD cell migration and invasion (Fig. 5A and B).
ITGB4-regulated pathway analysis
Next, the underlying mechanisms were explored. High throughput sequencing and DEG analysis was performed using ITGB4-knocked down A549 cells (Table SIII). A total of 917 DEGs were identified in ITGB4-knocked down A549 cells, including 522 upregulated and 395 downregulated genes (Fig. 5C). Pathway enrichment analysis was subsequently conducted using these DEGs. In the KEGG analysis of upregulated DEGs, cell cycle, oocyte meiosis and viral carcinogenesis pathways were identified. Meanwhile, metabolic pathways, oxidative phosphorylation and Parkinson's disease were identified for the downregulated DEGs (Fig. 5D). In the Reactome analysis demonstrated in Fig. 5E, the enriched pathways for upregulated DEGs consisted of cell cycle mitotic, cell cycle and cell cycle checkpoint pathways. The enriched pathways for downregulated DEGs consisted of metabolism, neutrophil degranulation and metabolism of steroids pathways. Notably, the cell cycle and metabolism pathways were all identified in the KEGG and Reactome pathway enrichment analyses, indicating the potential mechanism underlying the oncogenic influence of ITGB4 on LUAD.
Discussion
LUAD remains one of the most frequently diagnosed types of cancer worldwide. ITGB4 has been shown to have critical roles in numerous types of cancer (22,23), with functions in migration, epithelial-mesenchymal transition, infringement and diversion (12,19,24). Moreover, ITGB4 is also a possible prognostic marker in breast cancer (25). Previously, a systematic bioinformatics analysis of the correlation between ITGB4 and NSCLC was reported (15). However, the biological function of ITGB4 in LUAD remains poorly understood.
In the present study, ITGB4 was identified as a survival-related gene with aberrant expression in LUAD by combining RNA sequencing and TCGA-LUAD data. Furthermore, the oncogenic roles of ITGB4 in LUAD were also confirmed, including roles in promoting cell proliferation, colony formation, migration and invasion, and inhibiting cell apoptosis. The roles of ITGB4 in LUAD are similar to those in other cancer types, such as colorectal (26), pancreatic (27) and prostate (28) cancer. A recent study demonstrated that ITGB4-targeted cancer immunotherapies could inhibit tumor progression, and two approaches for immunological targeting of ITGB4 were explored in breast and head and neck cancer models (29). Moreover, immunological targeting of ITGB4 also enhanced the efficacy of anti-programmed death ligand 1 checkpoint blockade in these models. Since, as demonstrated in the present study, the ITGB4 expression level is significantly associated with disease progression and the outcome of LUAD, ITGB4 has the potential to be used as a predictive gene and therapeutic target for LUAD disease prognosis in the future. Due to the high morbidity and mortality rates of LUAD, new disease prognosis prediction methods and therapeutic targets are of great significance for improved treatment of this disease.
In the present study, KEGG and Reactome analyses demonstrated that the ITGB4-regulated genes were greatly enriched in metabolism and cell cycle-related pathways. It is a well-accepted theory that cancer is a metabolic disease. The uncontrolled, unlimited and accelerated proliferation of cancer cells requires large amounts of energy, which forces cells to develop ways to derive more energy from metabolism (30). The bridge from metabolism to the cell cycle is typically autophagy and oxidative phosphorylation, which were identified pathways in the present study. The mechanism of metabolic rewiring has been revealed to be related to ITGB4-involved autophagy (31). Next, the direct downstream genes or signaling pathways of ITGB4 should be identified to uncover the mechanisms related to ITGB4 promoted LUAD progression. It should also be confirmed whether ITGB4 influences cell metabolism and the cell cycle through such genes or pathways.
The present study does have certain limitations. The present study is only a preliminary exploration using retrospective data and in vitro and in vivo assays. The results did not reveal the definitive mechanisms for ITGB4-promoted LUAD progression. Further clinical and basic research are required for further exploration.
In summary, the biological function of ITGB4 in LUAD was reported in the present study, indicating a vital role of ITGB4 in LUAD progression. Combining the results of a previous study (32) with the results of the present study, ITGB4 could be a novel therapeutic target for this highly malignant cancer.
Supplementary Material
Supporting Data
Supporting Data
Supporting Data
Supporting Data
Acknowledgements
Not applicable.
Funding
Funding: No funding was received.
Availability of data and materials
The datasets used and/or analyzed during the current study are available from the corresponding author on reasonable request.
Authors' contributions
XL conceived and supervised the study. YP designed the experiments. SM performed the experiments. YL, NK and YP analyzed the data. XL and SM wrote the manuscript. XL and NK confirm the authenticity of all the raw data. All authors read and approved the final version of the manuscript.
Ethics approval and consent to participate
The study on human tissues was approved (approval no. Quick-PJ 2023-04-36) by The Ethics Committee of The First Affiliated Hospital of Anhui Medical University (Hefei, China), and written informed consent was acquired from all patients before sample collection. Animal experiments were approved (approval no. HFNU-2023-TK61-1) by The Medical Ethical Committee of Hefei Normal University (Hefei, China).
Patient consent for publication
Not applicable.
Competing interests
The authors declare that they have no competing interests.
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