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Adjusted polygenic risk score: A novel biomarker for the prevention of cardiovascular diseases
- Authors:
- Published online on: February 6, 2025 https://doi.org/10.3892/wasj.2025.320
- Article Number: 32
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Copyright : © Salata et al. This is an open access article distributed under the terms of Creative Commons Attribution License [CC BY 4.0].
Abstract
Introduction
Cardiovascular disease (CVD) is a major cause of morbidity and mortality worldwide, remaining the leading cause of mortality globally (1). The widely accepted approach to disease prevention involves a strategy that prioritizes prevention efforts towards individuals who are at a higher risk, emphasizing a risk-based methodology (2,3). The estimation of the probabilistic susceptibility of an individual to disease, commonly referred to as risk prediction, holds paramount importance in clinical decision-making, particularly as regards the early detection and prevention of prevalent adult-onset conditions, such as cardiovascular diseases (CVDs). Additionally, the effective communication and comprehension of this information can render it a potent asset in personal health management (4). Active management, which typically includes lipid-lowering treatment, is recommended for individuals whose 10-year risk is predicted to be above a certain threshold based on current risk assessment tools (5).
The European Society of Cardiology (ESC) and the American College of Cardiology/American Heart Association (ACC/AHA) regularly issue guidelines for the prevention of atherosclerotic cardiovascular disease (ASCVD) (6). These guidelines integrate standard ASCVD risk factors, such as blood pressure, total cholesterol and age to stratify individuals based on their 10-year risk of developing ASCVD. However, almost 40% of ASCVD cases arise in individuals classified as low or intermediate risk based on a clinical assessment. Thus, these guidelines are not recommended for preventive interventions, while they have reduced discriminative power among younger adults and older adults (7).
Accurately assessing the risk of CVD manifestation is thus vital in order to enable early detection and prevention strategies, and guide clinical decision-making, to prevent both future cardiovascular events and the associated deaths. Currently in clinical practice, risk prediction primarily relies on demographic characteristics, lifestyle factors, health parameters and family history (8). However, although there is a consensus among cardiologists and other health professionals that genetics contribute significantly to common adult-onset CVD appearance, routine genetic screening is currently absent from clinical care, when genetics are the earliest measurable contributor that can be assessed to estimate lifetime predisposition to CVD (9).
In familial aggregation studies, it has been observed that monogenic risk variants, typically rare, contribute to a small proportion of heritable cardiovascular disease risk (10,11). This finding provides evidence of the polygenic nature of cardiometabolic disease development, wherein common genetic variants (i.e., present in at least 1% of the population) considerably contribute to the overall risk (12).
Novel genetic profiling methods have been developed to estimate the probabilistic susceptibility of an individual to disease, based on their polygenic risk score (PRS) (13). That is a weighted sum of the number of risk alleles carried by an individual, where the risk alleles and their weights are defined by their measured effects as detected by genome-wide association studies (GWAS) (14).
The authors aimed to develop a novel PRS for a series of CVDs, and to further improve its risk estimation through the incorporation of chronological age, behavioral parameters and phenotypic characteristics, which then enable the calculation of a composite marker, the adjusted PRS (Adj-PRS). Thus, a novel in vitro diagnostic was developed, termed iDNA Cardio Health (15,16). The objective was to provide a genetic profiling tool for medical practice and facilitate the non-invasive estimation of predisposition, thus further personalizing cardiovascular disease prevention.
The present study aimed to address the limitations of traditional clinical metrics known to underestimate the risk of developing CVD for certain individuals with a higher genetic susceptibility, by employing the Adj-PRS designed to incorporate genetic predisposition along with the usual clinic cardiovascular risk prediction parameters.
Materials and methods
Assessment tools
The present study developed a novel PRS to estimate the comprehensive risk for six common cardiovascular conditions, comprising coronary artery disease, dilated cardiomyopathy, hypertrophic cardiomyopathy, atrial fibrillation, ischemic stroke and heart failure (16). Specifically, three unique algorithms were designed to: i) Search for statistically significant single nucleotide polymorphisms (SNPs) associated with disease predisposition in major databases with published GWAS (PubMed and GWAS catalog); ii) detect the appropriate SNPs by assessing P-value, beta coefficient, odds ratio and linkage disequilibrium metrics; and iii) calculate PRS for each cardiovascular condition under investigation.
An integrated risk assessment tool was created (Adj-PRS), as the authors employed the American Heart Association's Life's Simple 7 (LS7) lifestyle and phenotypic characteristics scoring system (17), comprising diet, physical activity, smoking, body mass index (BMI), total cholesterol, blood glucose levels and blood pressure, to evaluate the current cardiovascular health status of each individual and dynamically calculate the combined risk of developing CVD.
Patient data
Buccal swab samples were collected from 287 healthy individuals with the use of the iDNA Cardio Health kit and DNA was isolated and genotyped. DNA isolation and genotyping was performed by Eurofins employing BeadChips technology with Illumina PCR. Subsequently, the calculation of PRS and Adj-PRS followed and descriptive statistical measures were conducted. Further on, the overall impact associated with gender, BMI and smoking was investigated pre- and post-adjustment for coronary artery disease (CAD) and ischemic stroke (IS) risk predisposition. Lastly, in a separate sample of healthy individuals (n=291), the Adj PRS was cross-compared among individuals categorized by blood pressure, body mass index, salt consumption, exercise level, and smoking status, following the described procedure.
Of note, the present study used pre-existing anonymized data that does not allow for the identification of individuals. The present study did not involve any invasive procedures or direct interaction with patients. The present study only utilized pre-existing anonymized genetic data. These factors place the research outside the scope of requiring formal ethical review, as it poses no foreseeable risks to individuals. Nevertheless, it was ensured that the study adhered to the highest ethical standards available and was carried out in accordance with the Declaration of Helsinki. All participants were able to provided informed consent, allowing for the use of their anonymized genetic data for research and statistical purposes. This also applies to the questionnaire survey for which all participants were capable of and provided informed consent, allowing for the use of their answers for research and statistical purposes. Moreover, all participants had the right to withdraw their data at any time, ensuring their autonomy and control over their information.
Statistical analysis
Data are presented as the mean ± SD and statistical analysis was performed using GraphPad Prism 10 software (Dotmatics). Statistical significance was calculated using non-parametric one-way ANOVA of normally distributed data followed by Tukey's post hoc test. A value of P<0.05 was considered to indicate a statistically significant difference.
Results
In the present study, CVD risk stratification was examined in a randomly selected Greek population (n=287), employing both PRS and Adj-PRS. In CAD, although no statistically significant mean PRS differences were found between the sexes, a larger reduction between PRS and Adj-PRS was observed in females, putatively indicative of females adopting a healthier lifestyle and thus an improved cardiovascular health status (Fig. 1A). As was expected for the mean PRS, no marked differences were observed for the BMI and smoking status categories, for both CAD and IS (Fig. 1B and C). However, for CAD, an increased BMI was found to be significantly associated with a higher mean Adj-PRS in overweight and obese individuals (Fig. 1B). Similarly, smokers were demonstrated to have a significantly higher mean Adj- PRS comparing to non-smokers (Fig. 1C). Similarly, for IS, a larger reduction was observed in the mean Adj-PRS of females compared to males (Fig. 1A), while a significantly increased mean Adj-PRS was demonstrated both for each increased BMI group (Fig. 1B) and smokers (Fig. 1C).
Further investigations, in a separate cohort of 291 healthy Greek individuals (Table I), were carried out employing the Adj-PRS methodology to dynamically fine tune risk prediction based on SNPs identified as risk alleles, in combination with age and current cardiovascular health status. Both for CAD and IS (Fig. 2), Adj-PRS was significantly increased in hypertensive individuals, in overweight and obese individuals, when the salt consumption was high (1,500 mg/day Na), when the exercise level was recorded as moderate (150 min/week) or poor (0 min/week), and in smokers. Notably, those who quit smoking within the past year had improved their Adj-PRS, reaching levels of significance in IS. Hence, Adj-PRS can reclassify underestimated individuals from a marginal intermediate clinical risk to high risk, when in the presence of underlying genetic predisposition (i.e., high PRS).
![]() | Table IDemographic and clinical characteristics of the 291 participants who completed the questionnaire. |
Discussion
To the best of our knowledge, this is the first time that a PRS has been employed to assess cardiovascular risk and its interplay with environmental and lifestyle factors in a Greek population. The findings of the present study suggest that while PRS for CAD and IS is similarly distributed among females and males, lifestyle choices which affect overall health, including BMI, smoking, blood pressure, salt consumption and exercise frequency, may stratify the risk, as assessed by the Adj-PRS. While such evidence is currently lacking in the literature, similar findings have been previously reported by Hasbani et al (17), indicating that the adj-PRS algorithm used herein may be able to refine risk as expected based on environmental and lifestyle parameters. Nevertheless, future research is essential to include performance metrics and provide validation of our Adj PRS methodology in larger cohorts.
The evident underestimation of CVD risk (4,14) through conventional clinical methodologies underscores the necessity for more accurate assessment tools. The introduction of the Adj-PRS presents a promising avenue for effectively reclassifying individuals with marginal intermediate risk into a high-risk category (18). Identifying individuals with heightened genetic predisposition is paramount, as noted in recent literature (5,8). Individuals ranking in the top 5th percentile of a PRS exhibit a 3-fold elevated risk of developing CAD (12). Furthermore, disease onset tends to occur 4.4 years earlier in individuals within the top 2.5% of their PRS compared to those with an average PRS (7).
This innovative methodology harbors transformative potential in the domain of CVD prevention, providing a comprehensive framework encompassing screening, ongoing monitoring and subsequent clinical interventions. These findings suggest that PRS can be incorporated into current risk prediction frameworks to calculate comprehensive risk scores for CVDs. This concept has key implications for the wider use of genetic factors in the clinical setting to refine risk stratification for a set of CVDs.
A growing body of evidence supports the integration of PRS into existing risk assessment tools, as a means to enhance predictive accuracy (19-21). By incorporating genetic predisposition alongside traditional risk factors, such as blood pressure, cholesterol levels and age, PRS offers the potential to refine risk stratification and identify individuals at heightened risk of cardiovascular events (19), thus improving the precision of existing risk assessment models and better informing preventive interventions.
Despite its potential, numerous challenges persist in the broad adoption of this approach in the daily clinical setting. These encompass concerns regarding the accessibility of tests, clinician and patient education on results interpretation and limitations as also reimbursement. Moreover, additional research is required to clarify specific populations in whom targeted genetic testing will impact management and future research is required target the inclusion of PRSs within randomized controlled trials (14). Ongoing analyses have begun to address these issues, specifically noting the lack of guidance in current guidelines for patients of high polygenic risk (22,23).
The implementation of personalized medicine strategies holds considerable promise in mitigating the burden of CVDs and extending the human health span. By tailoring interventions to individual genetic predispositions and lifestyle factors, personalized medicine aims to optimize health outcomes and enhance disease prevention efforts. The integration of both PRS and adjusted PRS into clinical practice could proactively identify at-risk individuals, thereby facilitating targeted interventions and preventative measures.
Acknowledgements
Not applicable.
Funding
Funding: This study was privately funded by iDNA Laboratories.
Availability of data and materials
The data generated in the present study may be requested from the corresponding author.
Authors' contributions
NP, EN and ES conceptualized the study. TF and AS analyzed the data. ES, TF and NP wrote the manuscript. All authors confirm the authenticity of all the raw data. All authors reviewed and edited the manuscript, and all authors have read and approved the final manuscript.
Ethics approval and consent to participate
The present study used pre-existing anonymized data that does not allow for the identification of individuals. The present study did not involve any invasive procedures or direct interaction with patients. The present study only utilized pre-existing anonymized genetic data. These factors place the research outside the scope of requiring formal ethical review, as it poses no foreseeable risks to individuals. Nevertheless, it was ensured that the study adhered to the highest ethical standards available and was carried out in accordance with the Declaration of Helsinki. All participants were able to provided informed consent, allowing for the use of their anonymized genetic data for research and statistical purposes. This also applies to the questionnaire survey for which all participants were capable of and provided informed consent, allowing for the use of their answers for research and statistical purposes. Moreover, all participants had the right to withdraw their data at any time, ensuring their autonomy and control over their information.
Patient consent for publication
Not applicable.
Competing interests
The authors declare that they have no competing interests.
Use of artificial intelligence tools
During the preparation of this work, AI tools were used to improve the readability and language of the manuscript or to generate images, and subsequently, the authors revised and edited the content produced by the AI tools as necessary, taking full responsibility for the ultimate content of the present manuscript.
References
Tsao CW, Aday AW, Almarzooq ZI, Alonso A, Beaton AZ, Bittencourt MS, Boehme AK, Buxton AE, Carson AP, Commodore-Mensah Y, et al: Heart disease and stroke statistics-2022 update: A report from the American heart association. Circulation. 145:e153–e639. 2022.PubMed/NCBI View Article : Google Scholar | |
Arnett DK, Blumenthal RS, Albert MA, Buroker AB, Goldberger ZD, Hahn EJ, Himmelfarb CD, Khera A, Lloyd-Jones D, McEvoy JW, et al: 2019 ACC/AHA guideline on the primary prevention of cardiovascular disease: A report of the American college of Cardiology/American Heart association task force on clinical practice guidelines. Circulation. 140:e596–e646. 2019.PubMed/NCBI View Article : Google Scholar | |
Goff DC Jr, Lloyd-Jones DM, Bennett G, Coady S, D'Agostino RB, Gibbons R, Greenland P, Lackland DT, Levy D, O'Donnell CJ, et al: 2013 ACC/AHA guideline on the assessment of cardiovascular risk: A report of the American College of Cardiology/American Heart association task force on practice guidelines. Circulation. 129:S49–S73. 2014.PubMed/NCBI View Article : Google Scholar | |
Torkamani A, Wineinger NE and Topol EJ: The personal and clinical utility of polygenic risk scores. Nat Rev Genet. 19:581–590. 2018.PubMed/NCBI View Article : Google Scholar | |
Bebo A, Jarmul JA, Pletcher MJ, Hasbani NR, Couper D, Nambi V, Ballantyne CM, Fornage M, Morrison AC, Avery CL and de Vries PS: Coronary heart disease and ischemic stroke polygenic risk scores and atherosclerotic cardiovascular disease in a diverse, population-based cohort study. PLoS One. 18(e0285259)2023.PubMed/NCBI View Article : Google Scholar | |
Motamed N, Rabiee B, Perumal D, Poustchi H, Miresmail SJ, Farahani B, Maadi M, Saeedian FS, Ajdarkosh H, Khonsari MR, et al: Comparison of cardiovascular risk assessment tools and their guidelines in evaluation of 10-year CVD risk and preventive recommendations: A population based study. Int J Cardiol. 228:52–57. 2017.PubMed/NCBI View Article : Google Scholar | |
Mars N, Koskela JT, Ripatti P, Kiiskinen TTJ, Havulinna AS, Lindbohm JV, Ahola-Olli A, Kurki M, Karjalainen J, Palta P, et al: Polygenic and clinical risk scores and their impact on age at onset and prediction of cardiometabolic diseases and common cancers. Nat Med. 26:549–557. 2020.PubMed/NCBI View Article : Google Scholar | |
Marston NA, Pirruccello JP, Melloni GEM, Koyama S, Kamanu FK, Weng LC, Roselli C, Kamatani Y, Komuro I, Aragam KG, et al: Predictive utility of a coronary artery disease polygenic risk score in primary prevention. JAMA Cardiol. 8:130–137. 2023.PubMed/NCBI View Article : Google Scholar | |
Ashley EA, Hershberger RE, Caleshu C, Ellinor PT, Garcia JG, Herrington DM, Ho CY, Johnson JA, Kittner SJ, Macrae CA, et al: Genetics and cardiovascular disease: A policy statement from the American Heart association. Circulation. 126:142–157. 2012.PubMed/NCBI View Article : Google Scholar | |
Aragam KG and Natarajan P: Polygenic scores to assess atherosclerotic cardiovascular disease risk: Clinical perspectives and basic implications. Circ Res. 126:1159–1177. 2020.PubMed/NCBI View Article : Google Scholar | |
Fahed AC, Wang M, Homburger JR, Patel AP, Bick AG, Neben CL, Lai C, Brockman D, Philippakis A, Ellinor PT, et al: Polygenic background modifies penetrance of monogenic variants for tier 1 genomic conditions. Nat Commun. 11(3635)2020.PubMed/NCBI View Article : Google Scholar | |
Khera AV, Chaffin M, Aragam KG, Haas ME, Roselli C, Choi SH, Natarajan P, Lander ES, Lubitz SA, Ellinor PT and Kathiresan S: Genome-wide polygenic scores for common diseases identify individuals with risk equivalent to monogenic mutations. Nat Genet. 50:1219–1224. 2018.PubMed/NCBI View Article : Google Scholar | |
Lambert SA, Abraham G and Inouye M: Towards clinical utility of polygenic risk scores. Hum Mol Genet. 28:R133–R142. 2019.PubMed/NCBI View Article : Google Scholar | |
O'Sullivan JW, Raghavan S, Marquez-Luna C, Luzum JA, Damrauer SM, Ashley EA, O'Donnell CJ, Willer CJ and Natarajan P: American Heart Association Council on Genomic and Precision Medicine et al. Polygenic risk scores for cardiovascular disease: A scientific statement from the American heart association. Circulation. 146:e93–e118. 2022.PubMed/NCBI View Article : Google Scholar | |
Panagiotou N, Bersimis F, Fotis A, Sagonas A, Ntoumou E, Salata E, Kallistratos M and Psychogios A: P273: Adjusted polygenic score: Translation of a new concept for cardiovascular disease prevention and management. Genetics in Medicine Open. 1(100301)2023. | |
Panagiotou N and Chatziandreou E: MT5 adjusted polygenic risk score enables personalized cardiovascular disease prevention and clinical management. Value in Health. 25:S378–S379. 2022. | |
Hasbani NR, Ligthart S, Brown MR, Heath AS, Bebo A, Ashley KE, Boerwinkle E, Morrison AC, Folsom AR, Aguilar D and de Vries PS: American heart association's life's simple 7: Lifestyle recommendations, polygenic risk, and lifetime risk of coronary heart disease. Circulation. 145:808–818. 2022.PubMed/NCBI View Article : Google Scholar | |
Mujwara D, Henno G, Vernon ST, Peng S, Domenico PD, Schroeder B, Busby GB, Figtree GA and Bottà G: Integrating a polygenic risk score for coronary artery disease as a risk-enhancing factor in the pooled cohort equation: A cost-effectiveness analysis study. J Am Heart Assoc. 11(e025236)2022.PubMed/NCBI View Article : Google Scholar | |
Riveros-Mckay F, Weale ME, Moore R, Selzam S, Krapohl E, Sivley RM, Tarran WA, Sørensen P, Lachapelle AS, Griffiths JA, et al: Integrated polygenic tool substantially enhances coronary artery disease prediction. Circ Genom Precis Med. 14(e003304)2021.PubMed/NCBI View Article : Google Scholar | |
Hindy G, Aragam KG, Ng K, Chaffin M, Lotta LA and Baras A: Regeneron Genetics Center. Drake I, Orho-Melander M, Melander O, et al: Genome-Wide polygenic score, clinical risk factors, and long-term trajectories of coronary artery disease. Arterioscler Thromb Vasc Biol. 40:2738–2746. 2020.PubMed/NCBI View Article : Google Scholar | |
Saadatagah S, Naderian M, Dikilitas O, Hamed ME, Bangash H and Kullo IJ: Polygenic risk, rare variants, and family history. JACC Adv. 2(100567)2023.PubMed/NCBI View Article : Google Scholar | |
Elliott J, Bodinier B, Bond TA, Chadeau-Hyam M, Evangelou E, Moons KGM, Dehghan A, Muller DC, Elliott P and Tzoulaki I: predictive accuracy of a polygenic risk score-enhanced prediction model vs a clinical risk score for coronary artery disease. JAMA. 323:636–645. 2020.PubMed/NCBI View Article : Google Scholar | |
Isgut M, Sun J, Quyyumi AA and Gibson G: Highly elevated polygenic risk scores are better predictors of myocardial infarction risk early in life than later. Genome Med. 13(13)2021.PubMed/NCBI View Article : Google Scholar |