DDR1 promotes breast tumor growth by suppressing antitumor immunity
- Authors:
- Published online on: September 27, 2019 https://doi.org/10.3892/or.2019.7338
- Pages: 2844-2854
Abstract
Introduction
Breast cancer is the second most common cancer worldwide and, by far, the most frequent cancer among women (1). Approximately 15–20% of all patients with breast cancer are diagnosed with triple-negative breast cancer (TNBC), named after its lack of estrogen receptor alpha (ERα), progesterone receptor (PR) and epidermal growth factor receptor 2 (HER2) expression (2). While several treatment options are available to treat ERa+ and HER2-driven breast cancers, options are somewhat limited for patients with TNBC, who cannot take advantage of these targeted therapies. There is therefore a pressing clinical need to identify novel drug targets and therapeutic strategies for women with TNBC. Recent years have witnessed major clinical breakthroughs in cancer immunotherapies, which include cancer peptide vaccines, dendritic cell vaccines, adoptive transfer of cytotoxic T lymphocytes (CTL) and blockade of immune-suppressive checkpoint molecules (3–8). However, despite success with immunotherapies in treating melanoma and lung cancer, breast cancer has proven to be particularly difficult to treat with checkpoint blockade or other immunotherapies (9–13). The current clinical trials for patients with TNBC utilizing checkpoint-blockade immunotherapy have demonstrated only modest efficacy (14).
Discoidin domain receptor tyrosine kinase (DDR) 1 is a cell-surface tyrosine kinase, which can be activated by collagens, and regulates cell growth, adhesion, migration and matrix remodeling. DDR1 is predominantly expressed in normal epithelial cells and its aberrant expression in a variety of human cancers is associated with tumor progression, including breast, lung, ovary, liver, gastric cancer and glioma (15–21). Accumulating evidence has revealed DDR1 mutations in breast cancer, schwannoma, endometrial cancer, lung cancer and acute leukemia (22–26). Since DDR1 is being considered as a potential novel therapeutic target in cancer, defining its precise function during breast cancer progression is of critical importance for the development of associated therapies alone and in combination with immunotherapy.
In the present study, to further investigate the role of DDR1 in breast cancer progression and to validate DDR1 as a novel target for breast cancer therapy, two murine breast cancer cell lines, 4T1 and EMT6, were used to mimic human TNBC. It was demonstrated that DDR1 was frequently upregulated in patients with breast cancer. Furthermore, it was revealed that tumor cell DDR1 promoted breast cancer growth in vivo by modulating CTLs. Lastly, inhibition of DDR1 by using a specific extracellular domain (ECD) neutralizing antibody decreased breast cancer growth and increased CTL tumor infiltration in vivo.
Materials and methods
Patients and tissue samples
A total of 30 samples of breast cancer tissues and adjacent tissues were surgically removed from patients (age range, 37–56 years) in Jiangxi Cancer Hospital between March 2013 and December 2016. Ethical approval for the present study was provided by the Ethics Committee of Jiangxi Cancer Hospital. Written informed consent was obtained from all the study participants.
Bioinformatic analysis
For analysis of gene expression, The Cancer Genome Atlas (TCGA) BRCA datasets were downloaded from TCGA (https://tcga-data.nci.nih.gov) (27). UALCAN, an easy to use, interactive web-portal was used to analyze DDR1 mRNA gene expression in the breast cancer datasets (28).
Mice, cell lines and chemicals
A total of 32 female BALB/c mice (age, 6–8 weeks; weight, 22–28 g) were obtained from the Animal Center of the Chinese Academy of Medical Sciences (Beijing, China). Mice were provided with free access to food, water and bedding at all time, and were housed in filter top cages (maximum 5 mice per cage) at 21–23°C with 45–55% humidity and a 12-h light/dark cycle. All animal experiments were performed in accordance with the National Institute of Health Guide for the Care and Use of Laboratory Animals, with the approval of the Ethics Committee of Jiangxi Cancer Hospital. Mouse mammary cancer cell lines 4T1 and EMT6, derived from the BALB/c mouse strain, were obtained from the American Type Culture Collection and maintained in RPMI-1640 medium (Gibco; Thermo Fisher Scientific, Inc.) supplemented with 10% fetal bovine serum (FBS; Hyclone Laboratories; GE Healthcare Life Sciences), 1% penicillin/streptomycin (Invitrogen; Thermo Fisher Scientific, Inc.) at 37°C in 5% CO2.
Plasmid transfection
The full-length cDNA of mouse DDR1 (NM_172962.1; 2,625 bp) cloned in the pCMV3 backbone vector (cat. no. MG50829-UT) was obtained from Sino Biological, Inc. 4T1 cells (2×105 cells in 2 ml) were seeded into a 6-well plate, one day prior to transfection. A total of 5 µg DDR1-expressing plasmid DNA or empty vector, with 10 µl Lipofectamine® 2000 reagent (Invitrogen; Thermo Fisher Scientific, Inc.) in 200 µl Opti-MEM® medium, was added into each well. After 6 h, the transfection medium was replaced with fresh medium. After 72 h, 4T1-DDR1 cells and control 4T1-vector cells were selected with 500 µg/ml hygromycin for 1 week.
CRISPR/Cas9-mediated knockout (KO) of mouse DDR1
DDR1-deficient cells were generated using the CRISPR/Cas9 system, in order to investigate the role of DDR1 in the interactions between immune cells and mammary tumor cells. The target sequences for mouse DDR1 were: i, GCAGCAGCAGTAGAGATGAG; and ii, GCAGTGATGGAGATGGGGCT. The sequences for DDR1 were selected using the CRISPR MultiTargeter tool (http://www.multicrispr.net/) (29) and off-targets were excluded using GT-Scan tools (30). Oligonucleotides with BsmB1 restriction sites for guide RNAs were synthesized by SBS Genetech Co., Ltd., then phosphorylated using T4 kinase (31). The phosphorylated oligonucleotides were cloned into LentiCRISPR v2 (Plasmid no. 52961; Addgene) and the sequences of the cloned plasmids that were extracted from numerous selected colonies were confirmed by SBS Genetech Co., Ltd. EMT6 cells were transfected with pLentiCRISPR-single guide RNA (sgRNA) DDR1 using Lipofectamine™ 2000 (Invitrogen; Thermo Fisher Scientific, Inc.), according to the manufacturer's protocol. The cells were cultured with 1 µg/ml puromycin for 2 weeks, starting at 3 days post-transfection. Single cells were then sorted by fluorescence-activated cell sorting (FACS) into 96-well plates. The depletion of DDR1 in the surviving cells was validated via western blotting. KO1 and KO2 clones were from two independent sgRNA sequences of mouse DDR1.
RNA extraction and reverse transcription-quantitative PCR (RT-qPCR)
Total RNA was extracted using TRIzol® (Thermo Fisher Scientific, Inc.). Reverse transcription reactions were performed using M-MLV reverse transcriptase (Promega Corporation). For mRNA detection, DDR1 and GAPDH mRNA expression levels were analyzed using Luminaris Color HiGreen qPCR Master Mix (Thermo Fisher Scientific, Inc.), according to the manufacturer's protocol (Applied Biosystems; Thermo Fisher Scientific). The following primers were used: GAPDH, forward 5′-GACTCATGACCACAGTCCATGC-3′ and reverse 5′-AGAGGCAGGGATGATGTTCTG-3′; DDR1, forward 5′-GATTTCCCCTTAATGTGCGT-3′ and reverse 5′-TGGCATCTGGCCGTAAGATC-3′. Relative gene expression was calculated by the 2−ΔΔCq method (32).
Western blotting
The cells were washed twice with phosphate buffered saline (PBS) and lysed in ice-cold radio immunoprecipitation assay buffer (RIPA; Beyotime Institute of Biotechnology) with freshly added 0.01% protease inhibitor PMSF (Amresco) and incubated on ice for 20 min. The total cell protein was collected by centrifugation at 10,000 × g for 10 min at 4°C. Protein concentrations were determined using a Bradford assay (Bio-Rad Laboratories, Inc.). Total protein (30 µg) from each sample were separated via SDS-PAGE (10% gel) and electrophoretically transferred onto a polyvinylidene difluoride membrane (EMD Millipore). The immunoblots were blocked by incubation in 5% skimmed milk, 25 mM Tris (hydroxymethyl) aminomethane-HCl (pH 8.0), 150 mM NaCl, and 0.1% Tween® 20 for 1 h at 25°C. Membranes were incubated with the following primary antibodies: DDR1 (1:1,000; cat. no. sc-532; Santa Cruz Biotechnology, Inc.), DDR1 (1:1,000; cat. no. AF2396; R&D Systems, Inc.), and β-actin (1:10,000; cat. no. sc-47778; Santa Cruz Biotechnology, Inc.), followed by the corresponding horseradish peroxidase-conjugated secondary antibodies (1:10,000; cat. nos. 115-035-003 and 111-035-003; Jackson ImmunoResearch Laboratories, Inc.). Protein detection was performed using an enhanced chemiluminescence kit (ECL; Thermo Fisher Scientific, Inc.).
Cell Counting Kit-8 (CCK-8) cytotoxicity assay
The proliferation of cells was measured using a CCK-8 cytotoxicity assay (Dojindo Molecular Technologies, Inc.). EMT6 or 4T1 cells were seeded in 96-well plates at a density of 2,000 cells/well and cultured with RPMI-1640 medium containing 10% FBS. CCK-8 solution (20 µl) was added to each well, and the plates were incubated for 2 h at 37°C at the indicated time points. The optical density levels were measured using a microplate reader scanning at 450 nm according to the manufacturer's protocol.
Detection of released DDR1 extracellular domain in the media
EMT6 cells were washed twice with warm PBS, and the cell monolayers were incubated (37°C) in serum-free media for another 24 h. The conditioned media were then collected and clarified by a spin at 10,000 × g for 10 min at 4°C to remove cell debris. The supernatants were supplemented with EDTA to a final concentration of 2 mM, before a high-speed centrifugation (20,000 × g, 30 min, 4°C) to remove cell membranes and vesicles. A total of 200 µl of each media were then precipitated with trichloroacetic acid (24), and the resultant pellets were washed with acetone and resuspended in 2× reducing Laemmli SDS-sample buffer. The immunoblots were probed with antibody AF2396 (as aforementioned), which is directed against the N-terminal region of DDR1.
In vivo tumor studies
The tumor cells in log phase growth were centrifuged at 500 × g for 5 min at room temperature, washed once with Hank's balanced salt solution (HBSS), counted, and re-suspended in HBSS with 50% Matrigel (BD Biosciences) at a concentration of 5×105 cells/ml (4T1) or 1×106 cells/ml (EMT-6). Cell suspensions (100 µl) were injected subcutaneously near the fourth mammary gland fat pad. The mice were acclimated to the study conditions for at least 1 week prior to tumor cell implantation. The animals were randomly distributed into treatment groups (5 mice per group) and treated with mouse immunoglobulin (Ig) G1 isotype control (cat. no. BE0093; Bio X Cell), or anti-DDR1 (mouse IgG1 clone 5D5; cat. no. MABT333; EMD Millipore; 200 µg/mouse intraperitoneally twice per week for 4 weeks). Tumors were measured once per week using a caliper, and tumor volumes were calculated using the modified ellipsoid formula 1/2 × (length × width2).
Preparation of single cell suspension and antibody staining for flow cytometry
The tumors were collected, weighed and enzymatically digested using a cocktail of dispase (Thermo Fisher Scientific, Inc.), collagenase P (Roche Diagnostics) and DNaseI (Roche Diagnostics) (33) for 45 min at 37°C, to obtain a single cell suspension. Cells were counted using a Vi-CELL XR (Beckman Coulter, Inc.). For T-cell staining, cells were first incubated with mouse BD Fc block (1:100; clone 2.4G2; cat. no. 553141; BD Biosciences) and LIVE/DEAD® Fixable Dead Cell Stain (Invitrogen; Thermo Fisher Scientific, Inc.) for 30 min on ice. The cells were then stained for 30 min on ice with the following antibodies: Anti-CD45-BV605 (cat. no. 563053; clone 30-F11; 1:200; BD Biosciences), anti-CD3e-FITC (cat. no. 553061; clone 145-2C11; 1:100; BD Biosciences), anti-CD8-PerCP (cat. no. 100732; clone 53–6.7; 1:50; BioLegend, Inc.), anti-CD4-BV711 (cat. no. 100557; clone RM4-5; 1:200; BioLegend, Inc.) and anti-CD69-APC (cat. no. 104514; clone H1.2F3; 1:25; BioLegend, Inc.). For intracellular staining, the cells were washed with 1 ml PBS, and incubated for 30 min at 4°C with the surface marker antibodies. After washing, cells were fixed and permeabilized with fixation concentrate and permeabilization diluent (eBioscience) and stained in 10X permeabilization buffer (eBioscience) for the intracellular proteins, according to the manufacturer's protocol. The following antibodies were used for 30 min at room temperature in the dark: Anti-Ki67-PE antibody (cat. no. 652404; clone 16A8; 1:50; BioLegend, Inc.) and anti-T-box transcription factor 21 (also known as T-bet)-PE-Cy7 (cat. no. 644824; clone 4B10; 1:100; eBioscience). Flow cytometry data were collected with a BD LSRFortessa cell analyzer and analyzed using FlowJo Software (version 10.2; FlowJo LLC).
Statistical analysis
Data were analyzed using GraphPad Prism software (version 6; GraphPad Software, Inc.) and are presented as the mean ± standard deviation. Two-tailed Student's t-tests were used to compare two groups, and one-way ANOVA followed by Dunett's test was used to compare multiple groups. P<0.05 was considered to indicate a statistically significant difference.
Results
DDR1 is frequently upregulated in breast cancer
RT-qPCR analyses were performed to determine the expression levels of DDR1 in 20 primary breast cancer samples and their matched adjacent normal tissues. The results demonstrated that the mRNA expression levels of DDR1 were significantly higher in tumor tissues compared with the matched adjacent tissues (Fig. 1A). Further analysis of DDR1 expression levels using the TCGA breast cancer database revealed that DDR1 was expressed at higher levels in breast cancer samples compared with normal samples (Fig. 1B). In addition, DDR1 mRNA expression levels were higher in different subtypes (luminal, HER2+ and triple negative), compared with those in the normal breast tissues (Fig. 1C). Furthermore, the protein expression levels of DDR1 were examined by western blotting in another 10 primary breast cancer samples. The results demonstrated that the protein expression of DDR1 was also markedly increased in the breast cancer tissues collected in the present study compared with their matched adjacent normal tissues (Fig. 1D). Overall, these data demonstrated that DDR1 was upregulated in breast cancer.
Ectopic expression of DDR1 promotes tumor growth in vivo by suppressing antitumor immunity
Consistent with previously published results (34), mouse mammary tumor cells 4T1/Vector (4T1 cells stably transfected with empty vector) expressed undetectable levels of endogenous DDR1 protein. In order to determine whether DDR1 could affect tumor cell growth, mouse DDR1 was transfected into 4T1 cells and stable cells overexpressing DDR1 were obtained (Fig. 2A). The effects of DDR1 overexpression on the cell proliferation were then investigated using a CCK-8 assay. It was revealed that overexpression of DDR1 did not affect cancer cell growth in vitro (Fig. 2B). To further investigate the effects of DDR1 on tumor cell growth in vivo, a tumorigenesis assay was performed in BALB/c female mice using 4T1 cells with or without stable DDR1 overexpression. The tumors in the 4T1/DDR1 group grew faster compared with the 4T1/Vector group (P<0.01; Fig. 2C and D). These results suggested that high DDR1 expression in breast cancer may be associated with a more aggressive state. When investigating models for immuno-oncology purposes, it is also important to know the composition of infiltrated immune cells into a tumor. To this end, it was demonstrated that there was a lower percentage of CD4+ and CD8+ T cells in the tumors of the 4T1/DDR1 group compared with those in the 4T1/Vector group (P=0.014 and P=0.037, respectively; Fig. 2E and F).
Deletion of DDR1 inhibits tumor growth in vivo
To further elucidate the role of DDR1 in breast cancer cell growth, DDR1-deficient EMT-6 cell lines were established using the CRISPR/Cas9 system using two different sgRNA sequences (Fig. 3A). DDR1 KO clone 1 has a ‘AG’ insertion, which created a stop codon shortly after initiation (Fig. 3B). DDR1 KO clone 2 deletes four nucleotides ‘GGGC’ and results in a frame shift in the DDR1 coding sequence (Fig. 3B). DDR1 KO did not affect tumor cell growth in vitro (Fig. 3C). Notably, the tumors derived from the KO1 clone of EMT-6 cells regressed completely after they reached ~100 mm3 (P<0.0001; Fig. 3D and E). The tumors derived from the KO2 clone grew dramatically slower in the BALB/c hosts compared with those in the control group (P<0.0001; Fig. 3D and E). Taken together, DDR1 expression in the tumor cells was demonstrated to be important for sustained breast tumor growth in vivo.
Cytotoxic T cells mediate the tumor-promoting activity of DDR1
In order to examine the influence of tumor cell DDR1 on antitumor immunity, the tumors derived from EMT-6/Control and EMT-6/KO2 groups were collected, and tumor-infiltrating lymphocytes (TILs) were assessed via flow cytometric analysis. The results demonstrated that the percentage of CD4+ and CD8+ TILs was significantly increased (P=0.042 and P=0.025, respectively; Fig. 4A and B) in the tumors derived from the EMT-6 DDR1 KO2 cells compared with the tumors derived from the EMT-6/Control cells. DDR1 KO2-derived tumors also exhibited increased density of early activated and proliferating CD8+ T cells relative to control tumors (P=0.03 and P=0.035, respectively; Fig. 4C and D). In addition, DDR1 KO2-derived tumors had increased density of T-bet expressing CD8+ TILs compared with control tumors (P=0.017; Fig. 4E). T-bet, a T-box transcription factor, serves an important role in T cell differentiation and maturation (35,36). These data indicated that tumor DDR1 promoted breast cancer growth by modulating antitumor immunity.
DDR1 inhibition suppresses tumor growth in vivo by enhancing antitumor T cell activity
Structurally, DDR1 consists of an ECD, a transmembrane domain and an intracellular kinase domain (37–40). A recent study revealed that DDR1 had a kinase-independent function in promoting breast cancer growth (41). Secreted soluble DDR1-ECD has been reported in a number of previous studies (42–44), but its biological significance in cancer has not yet been elucidated. For these reasons, the present study first investigated whether EMT6 cells were releasing DDR1-ECD in the media. Secreted soluble DDR1-ECD was detected in the conditioned media from EMT6 cells (Fig. 5A). It was, therefore, hypothesized that treatment with a DDR1 neutralizing antibody (41,45), which specifically targets DDR1-ECD, could suppress tumor growth in vivo. To this end, parental EMT-6 cells were inoculated in mice to form tumors, and then treated with either the DDR1 neutralizing antibody (EMT6/anti-DDR1 group) or an isotype IgG1 control antibody (EMT6/anti-IgG group). The tumors in the EMT6/anti-DDR1 group grew much slower than those in the EMT6/anti-IgG group (P<0.001; Fig. 5B and C). In addition, there were more CD4+ and CD8+ T cells in the tumors of the EMT6/anti-DDR1 group compared with those in the EMT6/anti-IgG group (P=0.03 and P=0.018, respectively; Fig. 5D and E).
DDR1 mRNA is negatively correlated with the TIL signature gene expression
In order to further validate the impact of tumor cell DDR1 on antitumor immunity, TIMER (Tumor Immune Estimation Resource, http://cistrome.org/TIMER) (46), a comprehensive resource for the clinical relevance of tumor-immune cell correlations, was used to analyze TCGA breast cancer RNA sequencing dataset (27). It was revealed that the DDR1 mRNA expression levels were positively correlated with tumor purity, and negatively correlated with tumor infiltration of CD4+ and CD8+ T cells (Fig. 6A). Furthermore, DDR1 mRNA expression levels were negatively correlated with the TIL signature genes CD4 and CD8A, and the cytotoxic T cell marker granzyme B (Fig. 6B). Taken together, these data suggested that tumor cell DDR1 may affect tumor immunity in patients with breast cancer, which was consistent with the conclusions obtained from the syngeneic mammary tumor models in the present study.
Discussion
DDR1 was originally identified during the search for tyrosine kinase proteins expressed in human malignancies (47–49). DDR1 kinase is different from other receptor tyrosine kinase (RTK) members due to a homology domain in discoidin (50). After two decades of study, it is now clear that aberrant signaling through the DDR1 is closely associated with different steps of tumorigenesis, although the detailed molecular mechanism underlying the role of DDR1 remains largely unknown. Several studies have demonstrated that knockdown of DDR1 with small interfering RNA or short hairpin RNA in human cancer cell lines leads to decreased cell proliferation and metastatic potential both in vitro and in vivo with immunodeficient mouse models (16,51). However, mice with either whole body knockout of DDR1 or mammary gland specific deletion of DDR1 resulted in hyper-proliferation and abnormal branching of mammary ducts, and enhanced spontaneous tumorigenesis and lung metastasis (52,53). Notably, DDR1 may serve different roles in the initiation and progression of breast cancer.
One recent study demonstrated that DDR1 mutations were strongly associated with poor prognosis in postmenopausal patients with breast cancer (25). Some of these DDR1 mutations are in the ECD domain, such as Q92fs, R93Q, R105Q and N371Y, but the biological significance of these require further investigation.
The detailed molecular mechanism underlying how tumor cell DDR1 promotes breast cancer progression remains unknown. To help drive this research forward, the present study used the 4T1 and EMT6 syngeneic breast tumor models. These models are derived from murine mammary carcinoma in BALB/c mice and take advantage of the complete mouse immune system, serving as a powerful tool in immuno-oncology studies. Notably, the results from the present study demonstrated that DDR1 served a critical role in regulating tumor-immune cell interactions, in specific CD4+ and CD8+ T cells. However, how DDR1 regulates tumor infiltrated T cells is currently unknown. A previous study revealed functionally relevant interactions between DDR1 and Notch1; DDR1 was important for Notch1 activation (54). Notch signaling controls T cell development, particularly for tumor-infiltrating CD8+ T cells (55–57). CD8+ T cells have a critical role in establishing a sufficient immune response against cancer. Deletion or inhibition of DDR1 leads to inactivation of Notch signaling and stimulates the cytotoxic activation of TILs (57). The function-blocking anti-DDR1 antibody used in the present study was originally developed and tested in previous studies (45,58). These previous studies found that the function-blocking anti-DDR1 antibody inhibits DDR1 signaling without interfering with collagen binding. In addition, it was demonstrated that the crystal structure of the monomeric DDR1-ECD bound to the Fab fragment of the antibody (58).
To the best of our knowledge, there are currently just two RTKs of which the ECD has been successfully allosterically targeted by small molecules: FGFR and DDR2 (34,59,60). The present study demonstrated that inhibition of DDR1, using an ECD neutralizing antibody, decreased breast cancer growth in vivo by recruiting CD4+ and CD8+ TILs. This may represent a novel strategy to improve immunotherapy efficacy in breast cancer, even in TNBCs. During the preparation of the present manuscript, another study was published stating that there were more CD8+ T cells in tumors with depleted levels of DDR2, the other discoidin domain receptor family member (61). Furthermore, DDR2 depletion in isogenic murine models increased sensitivity to anti-programmed cell death 1 treatment when compared with monotherapy (61).
According to current studies, DDR1 has both kinase-dependent and independent functions in cancer (16,17,62–68). The present study highlighted a thus far unreported role of DDR1 in breast cancer progression, whereby DDR1 may elicit a tumor-promoting activity through modulating TILs. Therefore, DDR1 may serve as a potential target to improve efficiency of cancer immunotherapy. In future clinical studies, it would be meaningful if DDR1 expression levels were recorded in relation to patients' response to cancer immunotherapy in breast cancer, or other types of cancer.
Acknowledgements
Not applicable.
Funding
The present study was supported by the Project of Health Commission of Jiangxi province (grant no. 20175524).
Availability of data and materials
The datasets used and/or analyzed during the present study are available from the corresponding author upon reasonable request.
Authors' contributions
XZ conceived and supervised the project. WZ, TS and XZ performed the experiments and analyzed the data. WZ and XZ wrote the manuscript. All authors read and approved the final manuscript.
Ethics approval and consent to participate
Protocols involving the use of human tissue were approved by the Ethics Committee of Jiangxi Cancer Hospital and performed in accordance with the Declaration of Helsinki and the guidelines of the Ethics Committee of Jiangxi cancer Hospital. Written informed consent was obtained from all patients for the use of their tissues. Protocols involving animals were performed in accordance with the National Institute of Health Guide for the Care and Use of Laboratory Animals, with the approval of the Ethics Committee of Jiangxi Cancer Hospital.
Patient consent for publication
Not applicable.
Competing interests
The authors declare that they have no competing interests.
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