1
|
Runyon BA: AASLD Practice Guidelines
Committee: Management of adult patients with ascites due to
cirrhosis: An update. Hepatology. 49:2087–2107. 2009. View Article : Google Scholar : PubMed/NCBI
|
2
|
Garcia-Tsao G and Lim JK: Members of
Veterans Affairs Hepatitis C Resource Center Program: Management
and treatment of patients with cirrhosis and portal hypertension:
recommendations from the Department of Veterans Affairs Hepatitis C
Resource Center Program and the National Hepatitis C Program. Am J
Gastroenterol. 104:1802–1829. 2009. View Article : Google Scholar : PubMed/NCBI
|
3
|
European Association for the Study of the
Liver: EASL clinical practice guidelines on the management of
ascites, spontaneous bacterial peritonitis, and hepatorenal
syndrome in cirrhosis. J Hepatol. 53:397–417. 2010. View Article : Google Scholar : PubMed/NCBI
|
4
|
Wiest R, Krag A and Gerbes A: Spontaneous
bacterial peritonitis: Recent guidelines and beyond. Gut.
61:297–310. 2012. View Article : Google Scholar : PubMed/NCBI
|
5
|
Enomoto H, Inoue S, Matsuhisa A, Aizawa N,
Imanishi H, Saito M, Iwata Y, Tanaka H, Ikeda N, Sakai Y, et al:
Development of a new in situ hybridization method for the detection
of global bacterial DNA to provide early evidence of a bacterial
infection in spontaneous bacterial peritonitis. J Hepatol.
56:85–94. 2012. View Article : Google Scholar : PubMed/NCBI
|
6
|
Picard FJ and Bergeron MG: Rapid molecular
theranostics in infectious diseases. Drug Discov Today.
7:1092–1101. 2002. View Article : Google Scholar : PubMed/NCBI
|
7
|
Baron EJ: Implications of new technology
for infectious diseases practice. Clin Infect Dis. 43:1318–1323.
2006. View
Article : Google Scholar : PubMed/NCBI
|
8
|
Woo PC, Lau SK, Teng JL, Tse H and Yuen
KY: Then and now: Use of 16S rDNA gene sequencing for bacterial
identification and discovery of novel bacteria in clinical
microbiology laboratories. Clin Microbiol Infect. 14:908–934. 2008.
View Article : Google Scholar : PubMed/NCBI
|
9
|
Sontakke S, Cadenas MB, Maggi RG, Diniz PP
and Breitschwerdt EB: Use of broad range16S rDNA PCR in clinical
microbiology. J Microbiol Methods. 76:217–225. 2009. View Article : Google Scholar : PubMed/NCBI
|
10
|
Such J, Francés R, Muñoz C, Zapater P,
Casellas JA, Cifuentes A, Rodríguez-Valera F, Pascual S, Sola-Vera
J, Carnicer F, et al: Detection and identification of bacterial DNA
in patients with cirrhosis and culture-negative, nonneutrocytic
ascites. Hepatology. 36:135–141. 2002. View Article : Google Scholar : PubMed/NCBI
|
11
|
Francés R, Zapater P, González-Navajas JM,
Muñoz C, Caño R, Moreu R, Pascual S, Bellot P, Pérez-Mateo M and
Such J: Bacterial DNA in patients with cirrhosis and noninfected
ascites mimics the soluble immune response established in patients
with spontaneous bacterial peritonitis. Hepatology. 47:978–985.
2008. View Article : Google Scholar : PubMed/NCBI
|
12
|
Sugihara T, Koda M, Maeda Y, Matono T,
Nagahara T, Mandai M, Ueki M and Murawaki Y: Rapid identification
of bacterial species with bacterial DNA microarray in cirrhotic
patients with spontaneous bacterial peritonitis. Inter Med.
48:3–10. 2009. View Article : Google Scholar
|
13
|
Bruns T, Sachse S, Straube E, Assefa S,
Herrmann A, Hagel S, Lehmann M and Stallmach A: Identification of
bacterial DNA in neutrocytic and non-neutrocytic cirrhotic ascites
by means of a multiplex polymerase chain reaction. Liver Int.
29:1206–1214. 2009. View Article : Google Scholar : PubMed/NCBI
|
14
|
Soriano G, Esparcia O, Montemayor M,
Guarner-Argente C, Pericas R, Torras X, Calvo N, Román E, Navarro
F, Guarner C and Coll P: Bacterial DNA in the diagnosis of
spontaneous bacterial peritonitis. Aliment Pharmacol Ther.
33:275–284. 2011. View Article : Google Scholar : PubMed/NCBI
|
15
|
Corless CE, Guiver M, Borrow R,
Edwards-Jones V, Kaczmarski EB and Fox AJ: Contamination and
sensitivity issues with a real-time universal 16S rRNA PCR. J Clin
Microbiol. 38:1747–1752. 2000.PubMed/NCBI
|
16
|
Philipp S, Huemer HP, Irschick EU and
Gassner C: Obstacles of multiplex real-time PCR for bacterial 16S
rDNA: Primer specifity and DNA decontamination of Taq polymerase.
Transfus Med Hemother. 37:21–28. 2010. View Article : Google Scholar : PubMed/NCBI
|
17
|
Evans GE, Murdoch DR, Anderson TP, Potter
HC, George PM and Chambers ST: Contamination of Qiagen DNA
extraction kits with Legionella DNA. J Clin Microbiol.
41:3452–3453. 2003. View Article : Google Scholar : PubMed/NCBI
|
18
|
Tilburg JJ, Nabuurs-Franssen MH, van
Hannen EJ, Horrevorts AM, Melchers WJ and Klaassen CH:
Contamination of commercial PCR master mix with DNA from Coxiella
burnetii. J Clin Microbiol. 48:4634–4635. 2010. View Article : Google Scholar : PubMed/NCBI
|
19
|
Brosius J, Dull TJ, Sleeter DD and Noller
HF: Gene organization and primary structure of a ribosomal RNA
operon from Escherichia coli. J Mol Biol. 148:107–127. 1981.
View Article : Google Scholar : PubMed/NCBI
|
20
|
Corless CE, Guiver M, Borrow R,
Edwards-Jones V, Fox AJ and Kaczmarski EB: Simultaneous detection
of Neisseria meningitidis, Haemophilus influenzae, and
Streptococcus pneumoniae in suspected cases of meningitis
and septicemia using real-time PCR. J Clin Microbiol. 39:1553–1558.
2001. View Article : Google Scholar : PubMed/NCBI
|
21
|
Carroll NM, Adamson P and Okhravi N:
Elimination of bacterial DNA from Taq DNA polymerases by
restriction endonuclease digestion. J Clin Microbiol. 37:3402–3404.
1999.PubMed/NCBI
|
22
|
Klaschik S, Lehmann LE, Raadts A, Hoeft A
and Stuber F: Comparison of different decontamination methods for
reagents to detect low concentrations of bacterial 16S DNA by
real-time-PCR. Mol Biotechnol. 22:231–242. 2002. View Article : Google Scholar : PubMed/NCBI
|
23
|
Silkie SS, Tolcher MP and Nelson KL:
Reagent decontamination to eliminate false-positives in
Escherichia coli qPCR. J Microbiol Methods. 72:275–282.
2008. View Article : Google Scholar : PubMed/NCBI
|
24
|
Benjamin J, Singla V, Arora I, Sood S and
Joshi YK: Intestinal permeability and complications in liver
cirrhosis: A prospective cohort study. Hepatol Res. 43:200–207.
2013. View Article : Google Scholar : PubMed/NCBI
|
25
|
Aberg F, Helenius-Hietala J, Meurman J and
Isoniemi H: Association between dental infections and the clinical
course of chronic liver disease. Hepatol Res. 44:349–353. 2014.
View Article : Google Scholar : PubMed/NCBI
|
26
|
Zapater P, Francés R, González-Navajas JM,
de la Hoz MA, Moreu R, Pascual S, Monfort D, Montoliu S, Vila C,
Escudero A, et al: Serum and ascitic fluid bacterial DNA: A new
independent prognostic factor in noninfected patients with
cirrhosis. Hepatology. 48:1924–1931. 2008. View Article : Google Scholar : PubMed/NCBI
|
27
|
Hiramatsu K, Harada K, Tsuneyama K, Sasaki
M, Fujita S, Hashimoto T, Kaneko S, Kobayashi K and Nakanuma Y:
Amplification and sequence analysis of partial bacterial 16S
ribosomal RNA gene in gallbladder bile from patients with primary
biliary cirrhosis. J Hepatol. 33:9–18. 2000. View Article : Google Scholar : PubMed/NCBI
|
28
|
Islam D, Bandholtz L, Nilsson J, Wigzell
H, Christensson B, Agerberth B and Gudmundsson G: Downregulation of
bactericidal peptides in enteric infections: A novel immune escape
mechanism with bacterial DNA as a potential regulator. Nat Med.
7:180–185. 2001. View
Article : Google Scholar : PubMed/NCBI
|
29
|
Hardick J, Won H, Jeng K, Hsieh YH, Gaydos
CA, Rothman RE and Yang S: Identification of bacterial pathogens in
ascitic fluids from patients with suspected spontaneous bacterial
peritonitis by use of broad-range PCR (16S PCR) coupled with
high-resolution melt analysis. J Clin Microbiol. 50:2428–2432.
2012. View Article : Google Scholar : PubMed/NCBI
|
30
|
Fagan KJ, Rogers GB, Melino M, Arthur DM,
Costello ME, Morrison M, Powell EE and Irvine KM: Ascites bacterial
burden and immune cell profile are associated with poor clinical
outcomes in the absence of overt infection. PLoS One.
10:e01206422015. View Article : Google Scholar : PubMed/NCBI
|
31
|
Rogers GB, van der Gast CJ, Bruce KD,
Marsh P, Collins JE, Sutton J and Wright M: Ascitic microbiota
composition is correlated with clinical severity in cirrhosis with
portal hypertension. PLoS One. 8:e748842013. View Article : Google Scholar : PubMed/NCBI
|
32
|
Krohn S, Böhm S, Engelmann C, Hartmann J,
Brodzinski A, Chatzinotas A, Zeller K, Prywerek D, Fetzer I and
Berg T: Application of qualitative and quantitative real-time PCR,
direct sequencing, and terminal restriction fragment length
polymorphism analysis for detection and identification of
polymicrobial 16S rRNA genes in ascites. J Clin Microbiol.
52:1754–1757. 2014. View Article : Google Scholar : PubMed/NCBI
|