Active efflux pump adeB is involved in multidrug resistance of Acinetobacter baumannii induced by antibacterial agents
- Authors:
- Published online on: February 21, 2017 https://doi.org/10.3892/etm.2017.4141
- Pages: 1538-1546
Abstract
Introduction
Although carbapenems antibiotics remain the backbone therapy for severe suspected bacterial infections, resistance to this antimicrobial treatment has been increasingly reported (1). Thus, therapeutic options have become limited. Multidrug-resistance to antibiotics currently available, in particular in Gram-negative bacteria, has created a critical global medical challenge (2). Acinetobacter baumannii is frequently observed as a nosocomial infection, which causes high mortality, morbidity and hospitalization cost (3). Crude mortality rate and attributable mortality of the infection were reported to be 52 and 10–35%, respectively (4). Multidrug-resistant A. baumannii is considered as a leading cause of nosocomial infection, particularly in critically ill patients (5). A. baumannii has been reported to be resistant to a broad range of antimicrobial agents, and the tendency for its epidemic spread has subsequently extended (6). An increasing drug resistance of A. baumannii to carbapenems has been demonstrated by the SENTRY Antimicrobial Surveillance Program, whose objective was to report antimicrobial susceptibility and pathogen occurrence data for >40,000 episodes of BSI in 72 medical centers representing 22 nations since January 1997 (7). The emergence of multidrug and pandrug-resistant A. baumannii has caused major threats to the infection control and treatment plans in clinical practices (8). According to our knowledge, drug resistance of A. baumannii is closely related with the application of antibacterial agents. However, few studies have been performed to investigate whether a single antibacterial agent was able to induce pandrug resistance of A. baumannii. In the present study, drug resistant A. baumannii strains were generated in vitro, once sensitive strains were induced with some commonly used antibiotics, such as FEP, SCF, TZP, LEV, AK, IPM and CIP. Findings from the current study may provide evidence for the association between the drug resistance of A. baumannii strains and antibiotics, which may provide some guidance for the treatment of A. baumannii infection.
Materials and methods
Sample collection and susceptibility tests
A total of 16 non-repeated A. baumannii strains were identified from sputum samples collected from patients at the Second Xiangya Hospital of Central South University (Changsha, China) between January 2010 and June 2011 (Patient characteristics are presented in Table I). Strains were sensitive to penicillins, cephalosporins, β-lactam antibiotics, carbapenems, fluoroquinolones, and aminoglycosides. All isolates were assayed for the antibiotic susceptibility of cefepime, piperacillin/tazobactam, ciprofloxacin, amikacin, imipenem, cefoperazone/sulbactam and levofloxacin, which obtained from The National Institutes for Food and Drug Control of China (Beijing, China), using the Kirby-Bauer test. Mueller-Hinton (MH) broth and agar were purchased from Guangzhou Detgerm Microbiology Technology Co., Ltd. (Guangzhou, China). Results were analyzed using the performance standards for antimicrobial susceptibility testing established by the Clinical and Laboratory Standards Institute (CLSI) (9). Minimum inhibitory concentration (MIC) was measured using the agar dilution method. Results were analyzed using the performance standards established by the CLSI in 2009. Pseudomonas aeruginosa ATCC27853 (Mecconti, Sp. Zo.o., Warsaw, Poland) was used as a quality control.
Induction of drug-resistant strains using multi-step selection
A total of 16 strains of A. baumannii that were sensitive to FEP, cefoperazone-sulbactam (SCF), tazobactam (TZP), levofloxacin (LEV), amikacin (AK), imipenem (IPM), and ciprofloxacin (CIP) antibiotics were used for the induction of drug resistance in the strains. Bacteria were suspended in sterilized isotonic saline solution to a turbidity of 0.5 McFarland. The concentration of the suspension was modulated to 109 CFU/ml. Subsequently, 100 µl suspension was inoculated onto MH agar plates with the seven antibiotics outlined (antibiotic concentration, 1/4 of the MIC). Following inoculation at 37°C for 24 h, bacteria selected from single colonies were inoculated onto the MH agar plates at the same concentration as the antibiotics. Following inoculation for five generations, the resultant suspensions were inoculated onto the MH agar plates with a doubled concentration of antibiotics (1/2 of the MIC). The induction sequence of the drugs was FEP, SCF, TZP, IPM, AK, CIP and LEV. Sensitivity of the induced strains was determined using the Kirby-Bauer method according to the CLSI guidelines (9) and MIC detection.
DNA isolation from the A. baumannii strains
DNA from A. baumannii strains was extracted using a DNA genome extraction kit (Tiangen Biotech Co., Ltd., Beijing, China) prior to the induction of resistance to FEP, SCF, TZP, IPM, AK, CIP and LEV, according to the manufacturer's instructions. Extracted DNA was resolved in tris-ethylenediaminetetraacetic acid buffer, supplemented with RNase. Purified DNA was aliquoted and stored at −20°C.
Random amplified polymorphic DNA assay
Random amplified polymorphic DNA (RAPD) assay was performed using a RAPD analysis kit (GE Healthcare Life Sciences, Uppsala, Sweden). DNA was amplified by the addition of random primer AP2 with a sequence of 5′-GTTTCGCTCC-3′ (10). Polymerase chain reaction (PCR) amplification was performed in a total volume of 20 µl, containing 50 ng DNA template, 2X PCR mix and 2 µl of the primer. Mixtures were subjected to 45 cycles of amplification (95°C for 45 sec, 33°C for 45 sec, 72°C for 120 sec for each cycle) with an initial incubation step at 95°C for 5 min and a final extension step at 72°C for 10 min. Amplified fragments were separated using 1.5% agarose gel electrophoresis at 150 V/cm for 20 min. Images of the gels were captured under ultraviolet illumination. Subsequently, the distribution of the DNA bands obtained before and after drug induction were compared.
PCR amplification for the drug-resistant genes
Sequences of β-lactamase genes (OXA-23, OXA-24, AmpC, TEM-1 and IMP), fluoroquinolone resistance genes (parC and gyrA), aminoglycoside resistance genes [aac(3)-I, aac(6′)-I, ant(3′)-I and aph(3)-Via], 16S rRNA methylase genes (armA, rmtA and rmtB), and active efflux gene (adeB) were downloaded from Genbank (ncbi.nlm.nih.gov/genbank). Specific primers were designed according to these gene sequences. The primers (Table II) were synthesized by Sangon Biotech Co., Ltd., (Shanghai, China). PCR reactions were performed in a volume of 20 µl containing 2X Taq PCR Master Mix, 10 µmol/l of each primer and 50 ng DNA template. PCR conditions of each primer are listed in Table III. The amplification product was electrophoresed on a 1.5% agarose gel for 20 min with a voltage of 150 V. Following DNA purification, the DNA samples were sent to Sangon Biotech Co., Ltd. for sequencing analysis. The partial sequences of parC and gyrA were compared with that of the NCBI database respectively. using BLAST analysis (accessible at: https://blast.ncbi.nlm.nih.gov/Blast.cgi).
![]() | Table II.Primers used in polymerase chain reaction amplification and the lengths of the resultant fragments. |
Reverse transcription and Semi-quantitative polymerase chain reaction (RT-Semi-qPCR) assay
Total mRNA of 16 induced strains and sensitive strains were extracted using a total RNA kit II (Omega Bio-Tek, Inc. Norcross, GA, USA) according to the manufacturer's protocols. RT was executed using an ReverTra Ace-α-transcriptase purchased from Toyobo Co., Ltd., (Osaka, Japan) in a total volume of 25 µl, following the manufacturer's protocol. PCR was performed in a volume of 20 µl, comprising 2 µl cDNA. The mRNA expression of active efflux gene adeB was normalized to 16S rRNA. The following cycling conditions were used, adeB: 95°C for 5 min, then 35 cycles of 95°C for 30 sec, 53°C for 60 sec and 72°C for 90 sec, followed by 72°C for 4 min; 16S rRNA: 95°C for 5 min, 35 cycles of 94°C for 30 sec, 55°C for 40 sec and 72°C for 45 sec, followed by 72°C for 4 min. The primers used for 16S rRNA downloaded from Genbank (accessible at: https://www.ncbi.nlm.nih.gov/genbank/) were forward 5′-GTTATTAGGGAAGAACATATGTG-3′ and reverse 5′-CCACCTTCCTCCGGTTTGTCACC-3′. And the primers used for adeB were forward 5′-AAAGACTTCAAAGAGCGGACTA-3′ and reverse 5′-ATTGTCACCTTGTGGCAACCCT-3′. The cDNA amplification product was electrophoresed on a 1.5% agarose gel. Subsequently, the electrophoretic grayscale were analyzed to assess the product sizes using Quantity One 4.4.0 software (Bio-Rad Laboratories, Inc., Hercules, CA, USA) and presented as a mean ± standard deviation.
Statistical analysis
SPSS 17.0 software (SPSS, Inc., Chicago, IL, USA) was used for statistical analysis. The rate of induced strains resistant to each antibiotic and carrying rate of drug-resistant genes were presented as percentages. Chi-square test was used for comparing the carrying rate of drug resistance genes. Student's t-test was performed for the expression of adeB mRNA. P<0.05 was considered to indicate a statistically significant difference. The electrophoretic grayscale of adeB was presented as a mean ± standard deviation. Each experiment was repeated 3 times.
Results
Source and distribution of the strains
A total of 16 strains were isolated from sputum samples obtained from the Department of Senile Disease (43.8%), ICU (6.25%), Department of Respiratory Medicine (12.5%), Department of Hematology (12.5%), Department of Nephrology (12.5%), Department of Infectious Diseases (6.25%) and Department of Neurology (6.2%), respectively, at the Second Xiangya Hospital of Central South University.
MIC of the strains following induction in vitro
Among the 16 strains, 15 strains (93.8%) acquired drug resistance following in vitro induction. Five strains were resistant to all the drugs, while 8 strains were resistant to ≥5 drugs, and 2 strains were resistant to <5 drugs. Table IV summarizes the MICs of the 16 strains before and after in vitro induction using FEP, SCF, TZP, LEV, AK, IPM, and CIP, respectively. The number of strains resistant to FEP, CIP, LEV, AK, TZP, SCF, and IPM were 13 (81.3%), 12 (75.0%), 11 (68.8%), 11 (68.8%), 9 (56.3%), 8 (50.0%), and (43.8%), respectively. Minimum drug resistance of the strains was noted in IPM, followed by SCF and TZP. Following drug induction, a decrease was observed in the size of the inhibition zone generated by all the induced strains, and an increase was noted in the MIC to each drug (Table IV).
Genotyping of AP2
As the RAPD results indicate in Fig. 1, genotyping of the strains varied depending on the original non-induced strains (16 sensitive strains) and those obtained after induction in vitro.
Identification of the drug resistance genes
With the exception of four drug resistant genes (rmtA, IMP, TEM-1, and OXA-24), a significantly increased positive rate of gene amplification was noted in the induced strains when compared with drug-susceptible strains (P<0.05; Fig. 2; Table V). The present study showed that acquired drug resistance was achieved in A. baumannii following exposure to low concentrations of antibiotics, in vitro. Moreover, significant differences were exhibited in the amplification results of adeB in A. baumannii following in vitro induction when compared with the results obtained from the strains without in vitro induction (χ2=20.257; P<0.05; Table V).
PCR amplification and restriction map of gyrA and parC
Following drug induction using fluoroquinolone antibiotics, CIP and LEV, PCR results revealed the amplification of gyrA and parC before and after induction was positive. Following digestion using Hinf1, gyrA fragments, obtained from 10 drug-sensitive strains (10/16; 62.5%) generated two bands (225 and 80 bp, Fig. 3A), while the gyrA fragments, obtained from the 11 drug resistant strains, were not digested by Hinf1. parC fragments obtained from the drug resistant strains (3/12; 25.0%) and sensitive strains (11/16; 68.7%) were digested into two bands (205 and 195 bp, were displayed as one band due to it's similar molecular weight; Fig. 3B).
Sequence analyses of gyrA and parC
Following sequencing, the partial sequences were compared with that of the NCBI database using BLAST analysis (https://blast.ncbi.nlm.nih.gov/Blast.cgi). Results indicated nucleotide (nt) 242 C/T and 275 C/T were in the cutting site of Hinf1 in gyrA of the strains that underwent drug induction, which induced the substitution of serine 81 to leucine, and threonine 92 to methionine (Fig. 4). However, no gene mutation was noted in the cutting site of the Hinf1. The nt 251 C/T was exhibited in the cutting site of Hinf1 in parC of the strains that underwent drug induction, which induced the substitution of serine 84 to leucine (Fig. 5A and B). However, multiple synonymous mutations were observed, such as nt 297 T/C, nt 300 T/C, nt 306 G/T, nt 307 C/T, nt 312 T/T, and nt 318 A/T (Fig. 5C and D).
Expression of adeB mRNA
Semi-qRT-PCR indicated the lengths of the amplified fragments for adeB and 16S rRNA were 273 and 750 bp, respectively. The relative grayscale was calculated according to the Quantity One 4.4.0 software. Compared with the mRNA expression levels of the sensitive strains, significant differences were observed in the adeB mRNA expression of drug-induced strains (55.69±43.11% vs. 10.08±26.35%; P<0.05; Fig. 6).
Discussion
A. baumannii, which is a gram-negative, non-fermentative coccobacillus of the family Moraxellaceae, is considered to be an important cause of ventilator-associated pneumonia, sepsis, urinary system infection and meningitis (11–17). Currently, no approved antimicrobial drugs have been successfully developed to treat A. baumannii, as it exhibits multidrug resistance. In the present study, 16 A. baumannii strains were isolated from the Department of Senile Disease (43.8%), ICU (12.5%), Department of Respiratory Medicine (12.5%), Department of Hematology (12.5%), Department of Nephrology (12.5%), and Department of Neurology (6.2%), respectively, at the Second Xiangya Hospital of Central South University. The majority of strains were isolated from the ICU and the Department of Respiratory Medicine in a previous study (18). We speculated that this descrepency may be due to the strains selected in this study. Moreover, the strains were exclusively isolated from sputum samples, demonstrating that A. baumannii may be an important cause for respiratory tract infection and was similar to a previous study using sputum samples from patients with pneumonia as a source of Acinetobacter baumannii (18). Thus, more attention is required when monitoring the respirator and the nursing staff to prevent respiratory tract infections in these Departments.
The mechanism of how A. baumannii develops resistance towards multiple drugs has been extensively studied (19–21). The mechanisms underlying resistance to multiple drugs in A. baumannii have been identified to include i) the capacity to generate enzymes that may inactivate the antibacterial agents; ii) changes in the antibacterial-binding proteins that prevent their action; iii) alternations in the structure and number of porin proteins that lead to decreased permeability to antibacterial agents; and iv) the activity of efflux pumps that further reduce the concentration of antibacterial agents within the bacterial cell. It has been well-acknowledged that the long-term exposure to various antibiotics is the major reason for the formation of multidrug-resistant A. Baumannii (6). However, few studies have investigated the mechanism of how drug resistance is established. With the large-scale application of antibacterial agents, multidrug-resistant bacteria have been compared with bacteria that are sensitive to antibacterial agents. To date, various multidrug-resistant bacteria have been detected. For example, resistant Pseudomonas aeruginosa and Streptococcus pyogenes have been induced in vitro, using various agents such as gentamicin, ciprofloxacin, and azithromycin (22–26).
In the present study, multi-step selection was used for the induction of drug-resistant bacteria to avoid the specificity of the induction. Furthermore, the growth and disperse pattern of the bacteria in vivo was mimicked in our study. The initial induction concentration was 1/4 MIC, which revealed similarity with the low dose clinical medication administered in our clinical practices (27). A total of 15 strains (98.3%) resistant to FEP, SCF, TZP, IPM, AK, CIP and LEV were collected following exposure to increasing concentrations of the agent. Moreover, sharp increases were noted in the MIC to these agents post-induction. These results indicated that significant differences were observed in the drug-resistant phenotype of A. baumannii in the presence of antibiotics. Additionally, the drug tolerance of the strains was comparatively stable. Significant cross resistance was exhibited in the strains collected in the present study. Our study was consistent with previous reports (23,28).
The genotype and drug-resistant genes were analyzed before and after drug induction. The results of the present study revealed statistical differences in the drug resistance genes and genotyping. Moreover, a significantly increased positive rate was observed in the β-lactamase gene in strains subjected to drug induction, particularly OXA-23 (64.9%) and AmpC (91.9%). To our knowledge, OXA-23-producing A. baumannii was resistant to IPM (29–36). AmpC enzyme was encoded by chromogene, and it's over expression could induce drug resistance towards penicillin and the third generation broad-spectrum cephalosporins, through hydrolysis. We speculated that OXA-23 and AmpC may be associated with drug resistance towards FEP, SCF, TZP, and IPM as an increased positive rate was observed in OXA-23 and AmpC. In A. baumannii, aminoglycosides modifying enzyme genes, such as AAC(3)-I, AAC(6′)-I and ANT(3)-I, and 16S rRNA methylase gene, including armA, rmtA, rmtB, and qph (3), were revealed to induce the drug resistance towards the aminoglycoside antibiotics. This type of drug resistance may be related with horizontal transmission of the drug-resistant genetic locus induced by plasmid or transposon. The present findings indicated that statistical differences were observed in the carrying rate of armA and rmtB. Based on the present data, the expression of the aminoglycoside resistance genes was suggested to be a major cause for the drug resistance to the aminoglycosides demonstrated herein. In addition, gyrA and parC were isolated in all strains, and gene mutations of these genes may be associated with the formation of drug resistance (29,32). As the efflux pump, which is located in the outer membrane, has been suggested to have an important role in multidrug resistance capacity in bacteria (31–33), the expression of the active efflux gene adeB was determined. The resistance-nodulation-cell-division-type multidrug efflux pump, adeb, was associated with aminoglycoside resistance and has previously been implicated in mediating the level of susceptibility towards other drugs, such as tetracyclines, chloramphenicol, erythromycin, trimethoprim, and ethidium bromide (34). In the present study, a significant increase was noted in the carrying rate of adeB following in vitro induction; furthermore, significant differences were exhibited in the expression of adeB in strains that underwent drug induction when compared with the sensitive strains, which implied that the efflux pump has a crucial role in the drug resistance of A. baumannii. Notably, specific drug-resistant genes were also isolated in A. baumannii obtained from the clinical practices. However, no drug resistance was noted, which may be related to the lack of expression and low-level expression of these genes.
In the present study, notable differences were observed in the traits of colonies following in vitro induction. Compared with the colonies formed prior to drug induction, the profile of colonies were smaller in a pattern of slow growth. This demonstrated that the growth of the A. baumannii was notably affected by the antibiotics. Further studies are required to validate whether the pathogenicity of A. baumannii increases in the presence of increased drug resistance to antibiotics.
In conclusion, the present study established a drug resistant A. baumannii model following in vitro induction, using multiple-step methods. Furthermore, the active efflux pump may be involved in the development of drug resistance in A. baumannii in vitro. This study may provide useful information for the drug resistance mechanism of the A. baumannii; however, further studies are necessary to fully elucidate the drug resistance of A. baumannii in vivo.
Acknowledgments
The present study was supported by the China National Natural Scientific Foundation (grant no. 81470133), and the Science and Technology Planning Project of Hunan Province of China (grant no. 2015JC3035).
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