1
|
Lozano R, Naghavi M, Foreman K, Lim S,
Shibuya K, Aboyans V, Abraham J, Adair T, Aggarwal R, Ahn SY, et
al: Global and regional mortality from 235 causes of death for 20
age groups in 1990 and 2010: A systematic analysis for the global
burden of disease study. Lancet. 380:2095–2128. 2010. View Article : Google Scholar
|
2
|
Boschi-Pinto C, Velebit L and Shibuya K:
Estimating child mortality due to diarrhoea in developing
countries. Bull World Health Organ. 86:710–717. 2008. View Article : Google Scholar : PubMed/NCBI
|
3
|
Chowdhury F, Khan IA, Patel S, Siddiq AU,
Saha NC, Khan AI, Saha A, Cravioto A, Clemens J, Qadri F and Ali M:
Diarrheal illness and healthcare seeking behavior among a
population at high risk for diarrhea in Dhaka, Bangladesh. PLoS
One. 10:e1301052015. View Article : Google Scholar
|
4
|
Maya L, Puentes R, Reolón E, Acuña P, Riet
F, Rivero R, Cristina J and Colina R: Molecular diversity of bovine
viral diarrhea virus in Uruguay. Arch Virol. 161:529–535. 2016.
View Article : Google Scholar : PubMed/NCBI
|
5
|
Qadri F, Svennerholm AM, Faruque AS and
Sack RB: Enterotoxigenic Escherichia coli in developing countries:
Epidemiology, microbiology, clinical features, treatment, and
prevention. Clin Microbiol Rev. 18:465–483. 2005. View Article : Google Scholar : PubMed/NCBI
|
6
|
Khalil S, Mirdha BR, Sinha S, Panda A,
Singh Y, Joseph A and Deb M: Intestinal parasitosis in relation to
anti-retroviral therapy, CD4(+) T-cell count and diarrhea in HIV
patients. Korean J Parasitol. 53:705–712. 2015. View Article : Google Scholar : PubMed/NCBI
|
7
|
Estrada-Garcia T, Lopez-Saucedo C,
Thompson-Bonilla R, Abonce M, Lopez-Hernandez D, Santos JI, Rosado
JL, DuPont HL and Long KZ: Association of diarrheagenic Escherichia
coli pathotypes with infection and diarrhea among Mexican children
and association of atypical enteropathogenic E. coli with acute
diarrhea. J Clin Microbiol. 47:93–98. 2009. View Article : Google Scholar : PubMed/NCBI
|
8
|
Konishi N, Obata H, Monma C, Nakama A, Kai
A and Tsuji T: Bacteriological and epidemiological characteristics
of enterotoxigenic Escherichia coli isolated in Tokyo, Japan,
between 1966 and 2009. J Clin Microbiol. 49:3348–3351. 2011.
View Article : Google Scholar : PubMed/NCBI
|
9
|
Duchet-Suchaux M: Protective antigens
against enterotoxigenic Escherichia coli O101:K99,F41 in the infant
mouse diarrhea model. Infect Immun. 56:1364–1370. 1988.PubMed/NCBI
|
10
|
Liu B, Wu F, Li D, Beutin L, Chen M, Cao B
and Wang L: Development of a serogroup-specific DNA microarray for
identification of Escherichia coli strains associated with bovine
septicemia and diarrhea. Vet Microbiol. 142:373–378. 2010.
View Article : Google Scholar : PubMed/NCBI
|
11
|
Kelder T, Stroeve JH, Bijlsma S, Radonjic
M and Roeselers G: Correlation network analysis reveals
relationships between diet-induced changes in human gut microbiota
and metabolic health. Nutr Diabetes. 4:e1222014. View Article : Google Scholar : PubMed/NCBI
|
12
|
Tomás-Barberán FA, García-Villalba R,
González-Sarrías A, Selma MV and Espín JC: Ellagic acid metabolism
by human gut microbiota: Consistent observation of three urolithin
phenotypes in intervention trials, independent of food source, age,
and health status. J Agric Food Chem. 62:6535–6538. 2014.
View Article : Google Scholar : PubMed/NCBI
|
13
|
Diamant M, Blaak EE and de Vos WM: Do
nutrient-gut-microbiota interactions play a role in human obesity,
insulin resistance and type 2 diabetes? Obes Rev. 12:272–281. 2011.
View Article : Google Scholar : PubMed/NCBI
|
14
|
Dollé L, Tran HQ, Etienne-Mesmin L and
Chassaing B: Policing of gut microbiota by the adaptive immune
system. BMC Med. 14:272016. View Article : Google Scholar : PubMed/NCBI
|
15
|
Doré J and Blottière H: The influence of
diet on the gut microbiota and its consequences for health. Curr
Opin Biotechnol. 32:195–199. 2015. View Article : Google Scholar : PubMed/NCBI
|
16
|
Flowers SA and Ellingrod VL: The
microbiome in mental health: Potential contribution of gut
microbiota in disease and pharmacotherapy management.
Pharmacotherapy. 35:910–916. 2015. View Article : Google Scholar : PubMed/NCBI
|
17
|
Zhang X, Zhao Y, Xu J, Xue Z, Zhang M,
Pang X, Zhang X and Zhao L: Modulation of gut microbiota by
berberine and metformin during the treatment of high-fat
diet-induced obesity in rats. Sci Rep. 5:144052015. View Article : Google Scholar : PubMed/NCBI
|
18
|
Collins B, Hoffman J, Martinez K, Grace M,
Lila MA, Cockrell C, Nadimpalli A, Chang E, Chuang CC, Zhong W, et
al: A polyphenol-rich fraction obtained from table grapes decreases
adiposity, insulin resistance and markers of inflammation and
impacts gut microbiota in high-fat-fed mice. J Nutr Biochem.
31:150–165. 2016. View Article : Google Scholar : PubMed/NCBI
|
19
|
Larsen N, Vogensen FK, van den Berg FW,
Nielsen DS, Andreasen AS, Pedersen BK, Al-Soud WA, Sørensen SJ,
Hansen LH and Jakobsen M: Gut microbiota in human adults with type
2 diabetes differs from non-diabetic adults. PLoS One. 5:e90852010.
View Article : Google Scholar : PubMed/NCBI
|
20
|
Ling Z, Liu X, Jia X, Cheng Y, Luo Y, Yuan
L, Wang Y, Zhao C, Guo S, Li L, et al: Impacts of infection with
different toxigenic Clostridium difficile strains on faecal
microbiota in children. Sci Rep. 4:74852014. View Article : Google Scholar : PubMed/NCBI
|
21
|
Li M, Monaco MH, Wang M, Comstock SS,
Kuhlenschmidt TB, Fahey GC Jr, Miller MJ, Kuhlenschmidt MS and
Donovan SM: Human milk oligosaccharides shorten rotavirus-induced
diarrhea and modulate piglet mucosal immunity and colonic
microbiota. ISME J. 8:1609–1620. 2014. View Article : Google Scholar : PubMed/NCBI
|
22
|
Guard BC, Barr JW, Reddivari L,
Klemashevich C, Jayaraman A, Steiner JM, Vanamala J and Suchodolski
JS: Characterization of microbial dysbiosis and metabolomic changes
in dogs with acute diarrhea. PLoS One. 10:e1272592015. View Article : Google Scholar
|
23
|
Ansorge WJ: Next-generation DNA sequencing
techniques. N Biotechnol. 25:195–203. 2009. View Article : Google Scholar : PubMed/NCBI
|
24
|
Laboratory Animals' Welfare and Ethics
guidelines (GB/T 35892-2018). http://www.gb688.cn/bzgk/gb/newGbInfo?hcno=9BA619057D5C13103622A10FF4BA5D14
|
25
|
De Cupere F, Deprez P, Demeulenaere D and
Muylle E: Evaluation of the effect of 3 probiotics on experimental
Escherichia coli enterotoxaemia in weaned piglets. Zentralbl
Veterinarmed B. 39:277–284. 1992.PubMed/NCBI
|
26
|
Zhou G, Hu Z and Wang Y: An inquiry into
preparing diarrhea model of mice and application of diarrhea index.
Chin Tradit Herb Drugs. 4:195–196. 1994.
|
27
|
Han D, Hu Y, Li L, Tian H, Chen Z, Wang L,
Ma H, Yang H and Teng K: Highly pathogenic porcine reproductive and
respiratory syndrome virus infection results in acute lung injury
of the infected pigs. Vet Microbol. 169:135–146. 2014. View Article : Google Scholar
|
28
|
Cheng J, Chen Y, He T, Liao R, Liu R, Yi
M, Huang L, Yang Z, Fu T and Li X: Soil nitrogen leaching decreases
as biogas slurry DOC/N ratio increases. Appl Soil Ecol.
111:105–113. 2017. View Article : Google Scholar
|
29
|
Edgar RC: UPARSE: Highly accurate OTU
sequences from microbial amplicon reads. Nat Methods. 10:996–998.
2013. View Article : Google Scholar : PubMed/NCBI
|
30
|
Edgar RC, Haas BJ, Clemente JC, Quince C
and Knight R: UCHIME improves sensitivity and speed of chimera
detection. Bioinformatics. 27:2194–2200. 2011. View Article : Google Scholar : PubMed/NCBI
|
31
|
Amato KR, Yeoman CJ, Kent A, Righini N,
Carbonero F, Estrada A, Gaskins HR, Stumpf RM, Yildirim S, Torralba
M, et al: Habitat degradation impacts black howler monkey (Alouatta
pigra) gastrointestinal microbiomes. ISME J. 7:1344–1353. 2013.
View Article : Google Scholar : PubMed/NCBI
|
32
|
Schloss PD, Gevers D and Westcott SL:
Reducing the effects of PCR amplification and sequencing artifacts
on 16S rRNA-based studies. PLoS One. 6:e273102011. View Article : Google Scholar : PubMed/NCBI
|
33
|
Wang Y, Sheng HF, He Y, Wu JY, Jiang YX,
Tam NF and Zhou HW: Comparison of the levels of bacterial diversity
in freshwater, intertidal wetland, and marine sediments by using
millions of illumina tags. Appl Environ Microbiol. 78:8264–8271.
2012. View Article : Google Scholar : PubMed/NCBI
|
34
|
Richie E, Punjabi NH, Corwin A, Lesmana M,
Rogayah I, Lebron C, Echeverria P and Simanjuntak CH:
Enterotoxigenic Escherichia coli diarrhea among young children in
Jakarta, Indonesia. Am J Trop Med Hyg. 57:85–90. 1997. View Article : Google Scholar : PubMed/NCBI
|
35
|
Park ES, Jo S, Seong JK, Nam TC, Yang IS,
Choi MC and Yoon YS: Effect of acupuncture in the treatment of
young pigs with induced Escherichia coli diarrhea. J Vet Sci.
4:125–128. 2003.PubMed/NCBI
|
36
|
Monira S, Nakamura S, Gotoh K, Izutsu K,
Watanabe H, Alam NH, Nakaya T, Horii T, Ali SI, Iida T and Alam M:
Metagenomic profile of gut microbiota in children during cholera
and recovery. Gut Pathog. 5:12013. View Article : Google Scholar : PubMed/NCBI
|
37
|
Rigsbee L, Agans R, Shankar V, Kenche H,
Khamis HJ, Michail S and Paliy O: Quantitative profiling of gut
microbiota of children with diarrhea-predominant irritable bowel
syndrome. Am J Gastroenterol. 107:1740–1751. 2012. View Article : Google Scholar : PubMed/NCBI
|
38
|
Liu S, Zhao L, Zhai Z, Zhao W, Ding J, Dai
R, Sun T and Meng H: Porcine epidemic diarrhea virus infection
induced the unbalance of gut microbiota in piglets. Curr Microbiol.
71:643–649. 2015. View Article : Google Scholar : PubMed/NCBI
|
39
|
Tanabe S: Short peptide modules for
enhancing intestinal barrier function. Curr Pharm Des. 18:776–781.
2012. View Article : Google Scholar : PubMed/NCBI
|
40
|
Martínez-Augustin O, Rivero-Gutiérrez B,
Mascaraque C and de Medina Sánchez F: Food derived bioactive
peptides and intestinal barrier function. Int J Mol Sci.
15:22857–22873. 2014. View Article : Google Scholar : PubMed/NCBI
|
41
|
Hartfield D, Turner J, Huynh H, Lidman P,
Chaba T and Lacson A: The role of histopathology in diagnosing
protracted diarrhea of infancy. Fetal Pediatr Pathol. 29:144–157.
2010. View Article : Google Scholar : PubMed/NCBI
|
42
|
Simmerson SM, Armstrong PJ, Wünschmann A,
Jessen CR, Crews LJ and Washabau RJ: Clinical features, intestinal
histopathology, and outcome in protein-losing enteropathy in
yorkshire terrier dogs. J Vet Intern Med. 28:331–337. 2014.
View Article : Google Scholar : PubMed/NCBI
|
43
|
Saha DR, Guin S, Krishnan R, Nag D, Koley
H, Shinoda S and Ramamurthy T: Inflammatory diarrhea due to
enteroaggregative Escherichia coli: Evidence from clinical and mice
model studies. Gut Pathog. 5:362013. View Article : Google Scholar : PubMed/NCBI
|
44
|
Hooper LV: Bacterial contributions to
mammalian gut development. Trends Microbol. 12:129–134. 2004.
View Article : Google Scholar
|
45
|
Zhang K, Hornef MW and Dupont A: The
intestinal epithelium as guardian of gut barrier integrity. Cell
Microbiol. 17:1561–1569. 2015. View Article : Google Scholar : PubMed/NCBI
|
46
|
Roselli M, Finamore A, Britti MS, Bosi P,
Oswald I and Mengheri E: Alternatives to in-feed antibiotics in
pigs: Evaluation of probiotics, zinc or organic acids as protective
agents for the intestinal mucosa. A comparison of in vitro and in
vivo results. Anim Res. 54:203–218. 2005. View Article : Google Scholar
|
47
|
Gu S, Chen D, Zhang JN, Lv X, Wang K, Duan
LP, Nie Y and Wu XL: Bacterial community mapping of the mouse
gastrointestinal tract. PLoS One. 8:e749572013. View Article : Google Scholar : PubMed/NCBI
|
48
|
Li Y, Liao Q, Lin M, Zhong D, Wei L, Han
Bo B, Miao H, Yao Meicun M and Xie Z: An integrated metabonomics
and microbiology analysis of host-microbiota metabolic interactions
in rats with Coptis chinensis-induced diarrhea. RSC Adv.
5:79329–79341. 2015. View Article : Google Scholar
|
49
|
Zhang X, Zhao Y, Zhang M, Pang X, Xu J,
Kang C, Li M, Zhang C, Zhang Z, Zhang Y, et al: Structural changes
of gut microbiota during berberine-mediated prevention of obesity
and insulin resistance in high-fat diet-fed rats. PLoS One.
7:e425292012. View Article : Google Scholar : PubMed/NCBI
|
50
|
Xu X and Zhang X: Effects of
cyclophosphamide on immune system and gut microbiota in mice.
Microbiol Res. 171:97–106. 2015. View Article : Google Scholar : PubMed/NCBI
|
51
|
Jang SE, Joh EH, Ahn YT, Huh CS, Han MJ
and Kim DH: Lactobacillus casei HY7213 ameliorates
cyclophosphamide-induced immunosuppression in mice by activating
NK, cytotoxic T cells and macrophages. Immunopharmacol
Immunotoxicol. 35:396–402. 2013. View Article : Google Scholar : PubMed/NCBI
|
52
|
Reeves AE, Theriot CM, Bergin IL,
Huffnagle GB, Schloss PD and Young VB: The interplay between
microbiome dynamics and pathogen dynamics in a murine model of
Clostridium difficile infection. Gut Microbes. 2:145–158. 2011.
View Article : Google Scholar : PubMed/NCBI
|
53
|
Lv Z, Peng G, Liu W, Xu H and Su J:
Berberine blocks the relapse of Clostridium difficile infection in
C57BL/6 mice after standard vancomycin treatment. Antimicrob Agents
Chemother. 59:3726–3735. 2015. View Article : Google Scholar : PubMed/NCBI
|
54
|
Pop M, Walker AW, Paulson J, Lindsay B,
Antonio M, Hossain MA, Oundo J, Tamboura B, Mai V, Astrovskaya I,
et al: Diarrhea in young children from low-income countries leads
to large-scale alterations in intestinal microbiota composition.
Genome Biol. 15:R762014. View Article : Google Scholar : PubMed/NCBI
|
55
|
Kang DW, Park JG, Ilhan ZE, Wallstrom G,
Labaer J, Adams JB and Krajmalnik-Brown R: Reduced incidence of
Prevotella and other fermenters in intestinal microflora of
autistic children. PLoS One. 8:e683222013. View Article : Google Scholar : PubMed/NCBI
|
56
|
De Filippo C, Cavalieri D, Di Paola M,
Ramazzotti M, Poullet JB, Massart S, Collini S, Pieraccini G and
Lionetti P: Impact of diet in shaping gut microbiota revealed by a
comparative study in children from Europe and rural Africa. Proc
Natl Acad Sci USA. 107:14691–14696. 2010. View Article : Google Scholar : PubMed/NCBI
|
57
|
Kayser FH: Safety aspects of enterococci
from the medical point of view. Int J Food Microbiol. 88:255–262.
2003. View Article : Google Scholar : PubMed/NCBI
|
58
|
Hu Y, Dun Y, Li S, Zhang D, Peng N, Zhao S
and Liang Y: Dietary Enterococcus faecalis LAB31 improves growth
performance, reduces diarrhea, and increases fecal Lactobacillus
number of weaned piglets. PLoS One. 10:e1166352015.
|
59
|
Fischer H, Holst E, Karlsson F, Benoni C,
Toth E, Olesen M, Lindén M and Sjöberg K: Altered microbiota in
microscopic colitis. Gut. 64:1185–1186. 2015. View Article : Google Scholar : PubMed/NCBI
|
60
|
Shin NR, Lee JC, Lee HY, Kim MS, Whon TW,
Lee MS and Bae JW: An increase in the Akkermansia spp. population
induced by metformin treatment improves glucose homeostasis in
diet-induced obese mice. Gut. 63:727–735. 2014. View Article : Google Scholar : PubMed/NCBI
|
61
|
Derrien M, Van Baarlen P, Hooiveld G,
Norin E, Müller M and de Vos WM: Modulation of mucosal immune
response, tolerance, and proliferation in mice colonized by the
mucin-degrader Akkermansia muciniphila. Front Microbiol. 2:1662011.
View Article : Google Scholar : PubMed/NCBI
|
62
|
Dylag K, Hubalewska-Mazgaj M, Surmiak M,
Szmyd J and Brzozowski T: Probiotics in the mechanism of protection
against gut inflammation and therapy of gastrointestinal disorders.
Curr Pharm Des. 20:1149–1155. 2014. View Article : Google Scholar : PubMed/NCBI
|
63
|
Gong J and Yang C: Advances in the methods
for studying gut microbiota and their relevance to the research of
dietary fiber functions. Food Res Int. 48:916–929. 2012. View Article : Google Scholar
|
64
|
Lv W, Liu C, Ye C, Sun J, Tan X, Zhang C,
Qu Q, Shi D and Guo S: Structural modulation of gut microbiota
during alleviation of antibiotic-associated diarrhea with herbal
formula. Int J Biol Macromol. 105:1622–1629. 2017. View Article : Google Scholar : PubMed/NCBI
|