1
|
Vestbo J, Hurd SS, Agustí AG, Jones PW,
Vogelmeier C, Anzueto A, Barnes PJ, Fabbri LM, Martinez FJ,
Nishimura M, et al: Global strategy for the diagnosis, management,
and prevention of chronic obstructive pulmonary disease: GOLD
executive summary. Am J Respir Crit Care Med. 187:347–365. 2013.
View Article : Google Scholar : PubMed/NCBI
|
2
|
Gosens R, Zaagsma J, Meurs H and Halayko
AJ: Muscarinic receptor signaling in the pathophysiology of asthma
and COPD. Respir Res. 7:732006. View Article : Google Scholar : PubMed/NCBI
|
3
|
Chen LC, Zhang Z, Myers AC and Huang SK:
Cutting edge: Altered pulmonary eosinophilic inflammation in mice
deficient for Clara cell secretory 10-kDa protein. J Immunol.
167:3025–3028. 2001. View Article : Google Scholar : PubMed/NCBI
|
4
|
Pilette C, Godding V, Kiss R, Delos M,
Verbeken E, Decaestecker C, De Paepe K, Vaerman JP, Decramer M and
Sibille Y: Reduced epithelial expression of secretory component in
small airways correlates with airflow obstruction in chronic
obstructive pulmonary disease. Am J Respir Crit Care Med.
163:185–194. 2001. View Article : Google Scholar : PubMed/NCBI
|
5
|
Shijubo N, Itoh Y, Yamaguchi T, Imada A,
Hirasawa M, Yamada T, Kawai T and Abe S: Clara cell
protein-positive epithelial cells are reduced in small airways of
asthmatics. Am J Respir Crit Care Med. 160:930–933. 1999.
View Article : Google Scholar : PubMed/NCBI
|
6
|
Long XB, Hu S, Wang N, Zhen HT, Cui YH and
Liu Z: Clara cell 10-kDa protein gene transfection inhibits NF-κB
activity in airway epithelial cells. PLoS One. 7:e359602012.
View Article : Google Scholar : PubMed/NCBI
|
7
|
Pang M, Wang H, Bai JZ, Cao D, Jiang Y,
Zhang C, Liu Z, Zhang X, Hu X, Xu J and Du Y: Recombinant rat CC16
protein inhibits LPS-induced MMP-9 expression via NF-κB pathway in
rat tracheal epithelial cells. Exp Biol Med (Maywood).
240:1266–1278. 2015. View Article : Google Scholar : PubMed/NCBI
|
8
|
Cravatt BF, Simon GM and Yates JR III: The
biological impact of mass-spectrometry-based proteomics. Nature.
450:991–1000. 2007. View Article : Google Scholar : PubMed/NCBI
|
9
|
Domon B and Aebersold R: Options and
considerations when selecting a quantitative proteomics strategy.
Nat Biotechnol. 28:710–721. 2010. View
Article : Google Scholar : PubMed/NCBI
|
10
|
Bauer KM, Lambert PA and Hummon AB:
Comparative label-free LC-MS/MS analysis of colorectal
adenocarcinoma and metastatic cells treated with 5-fluorouracil.
Proteomics. 12:1928–1937. 2012. View Article : Google Scholar : PubMed/NCBI
|
11
|
Clough T, Thaminy S, Ragg S, Aebersold R
and Vitek O: Statistical protein quantification and significance
analysis in label-free LC-MS experiments with complex designs. BMC
Bioinformatics. 13:(Suppl 16). S62012. View Article : Google Scholar : PubMed/NCBI
|
12
|
Niehl A, Zhang ZJ, Kuiper M, Peck SC and
Heinlein M: Label-free quantitative proteomic analysis of systemic
responses to local wounding and virus infection in Arabidopsis
thaliana. J Proteome Res. 12:2491–2503. 2013. View Article : Google Scholar : PubMed/NCBI
|
13
|
Guerrera IC, Quetier I, Fetouchi R, Moreau
F, Vauloup-Fellous C, Lekbaby B, Rousselot C, Chhuon C, Edelman A,
Lefevre M, et al: Regulation of interleukin-6 in head and neck
squamous cell carcinoma is related to papillomavirus infection. J
Proteome Res. 13:1002–1011. 2014. View Article : Google Scholar : PubMed/NCBI
|
14
|
Thomas PD, Campbell MJ, Kejariwal A, Mi H,
Karlak B, Daverman R, Diemer K, Muruganujan A and Narechania A:
PANTHER: A library of protein families and subfamilies indexed by
function. Genome Res. 13:2129–2141. 2003. View Article : Google Scholar : PubMed/NCBI
|
15
|
Cho RJ and Campbell MJ: Transcription,
genomes, function. Trends Genet. 16:409–415. 2000. View Article : Google Scholar : PubMed/NCBI
|
16
|
Jensen LJ, Kuhn M, Stark M, Chaffron S,
Creevey C, Muller J, Doerks T, Julien P, Roth A, Simonovic M, et
al: STRING 8-a global view on proteins and their functional
interactions in 630 organisms. Nucleic Acids Res. 37:(Database
Issue). D412–D416. 2009. View Article : Google Scholar : PubMed/NCBI
|
17
|
Livak KJ and Schmittgen TD: Analysis of
relative gene expression data using real-time quantitative PCR and
the 2(−Delta Delta C(T)) Method. Methods. 25:402–408. 2001.
View Article : Google Scholar : PubMed/NCBI
|
18
|
Candeias SM and Testard I: The many
interactions between the innate immune system and the response to
radiation. Cancer Lett. 368:173–178. 2015. View Article : Google Scholar : PubMed/NCBI
|
19
|
de Sousa Abreu R, Penalva LO, Marcotte EM
and Vogel C: Global signatures of protein and mRNA expression
levels. Mol Biosyst. 5:1512–1526. 2009.PubMed/NCBI
|
20
|
Lackner DH, Beilharz TH, Marguerat S, Mata
J, Watt S, Schubert F, Preiss T and Bähler J: A network of multiple
regulatory layers shapes gene expression in fission yeast. Mol
Cell. 26:145–155. 2007. View Article : Google Scholar : PubMed/NCBI
|
21
|
Irander K, Palm JP, Borres MP and Ghafouri
B: Clara cell protein in nasal lavage fluid and nasal nitric
oxide-biomarkers with anti-inflammatory properties in allergic
rhinitis. Clin Mol Allergy. 10:42012. View Article : Google Scholar : PubMed/NCBI
|
22
|
Lensmar C, Nord M, Gudmundsson GH, Roquet
A, Andersson O, Jörnvall H, Eklund A, Grunewald J and Agerberth B:
Decreased pulmonary levels of the anti-inflammatory Clara cell 16
kDa protein after induction of airway inflammation in asthmatics.
Cell Mol Life Sci. 57:976–981. 2000. View Article : Google Scholar : PubMed/NCBI
|
23
|
Spruit MA, Gosselink R, Troosters T,
Kasran A, Gayan-Ramirez G, Bogaerts P, Bouillon R and Decramer M:
Muscle force during an acute exacerbation in hospitalised patients
with COPD and its relationship with CXCL8 and IGF-I. Thorax.
58:752–756. 2003. View Article : Google Scholar : PubMed/NCBI
|
24
|
Yamada T, Mishima T, Sakamoto M, Sugiyama
M, Matsunaga S and Wada M: Oxidation of myosin heavy chain and
reduction in force production in hyperthyroid rat soleus. J Appl
Physiol (1985). 100:1520–1526. 2006. View Article : Google Scholar : PubMed/NCBI
|
25
|
Serrano AL, Pérez M, Lucía A, Chicharro
JL, Quiroz-Rothe E and Rivero JL: Immunolabelling, histochemistry
and in situ hybridisation in human skeletal muscle fibres to detect
myosin heavy chain expression at the protein and mRNA level. J
Anat. 199:329–337. 2001. View Article : Google Scholar : PubMed/NCBI
|
26
|
Maltais F, Sullivan MJ, LeBlanc P,
Schachat FH, Simard C, Blank JM and Jobin J: Altered expression of
myosin heavy chain in the vastus lateralis muscle in patients with
COPD. Eur Respir J. 13:850–854. 1999. View Article : Google Scholar : PubMed/NCBI
|
27
|
Song Y, Karisnan K, Noble PB, Berry CA,
Lavin T, Moss TJ, Bakker AJ, Pinniger GJ and Pillow JJ: In utero
LPS exposure impairs preterm diaphragm contractility. Am J Respir
Cell Mol Biol. 49:866–874. 2013. View Article : Google Scholar : PubMed/NCBI
|
28
|
Goley ED and Welch MD: The ARP2/3 complex:
An actin nucleator comes of age. Nat Rev Mol Cell Biol. 7:713–726.
2006. View
Article : Google Scholar : PubMed/NCBI
|
29
|
Kim HR, Liu K, Roberts TJ and Hai CM:
Length-dependent modulation of cytoskeletal remodeling and
mechanical energetics in airway smooth muscle. Am J Respir Cell Mol
Biol. 44:888–897. 2011. View Article : Google Scholar : PubMed/NCBI
|
30
|
Schubert KO, Focking M and Cotter DR:
Proteomic pathway analysis of the hippocampus in schizophrenia and
bipolar affective disorder implicates 14-3-3 signaling, aryl
hydrocarbon receptor signaling and glucose metabolism: Potential
roles in GABAergic interneuron pathology. Schizophr Res. 167:64–72.
2015. View Article : Google Scholar : PubMed/NCBI
|
31
|
Yun J, Jeong BH, Kim HJ, Park YJ, Lee YJ,
Choi EK, Carp RI and Kim YS: A polymorphism in the YWHAH gene
encoding 14-3-3 eta that is not associated with sporadic
Creutzfeldt-Jakob disease (CJD). Mol Biol Rep. 39:3619–3625. 2012.
View Article : Google Scholar : PubMed/NCBI
|
32
|
Kilani RT, Maksymowych WP, Aitken A, Boire
G, St-Pierre Y, Li Y and Ghahary A: Detection of high levels of 2
specific isoforms of 14-3-3 proteins in synovial fluid from
patients with joint inflammation. J Rheumatol. 34:1650–1657.
2007.PubMed/NCBI
|
33
|
Davis AJ, Chen BP and Chen DJ: DNA-PK: A
dynamic enzyme in a versatile DSB repair pathway. DNA Repair
(Amst). 17:21–29. 2014. View Article : Google Scholar : PubMed/NCBI
|
34
|
Wei Y, Xu YD, Yin LM, Wang Y, Ran J, Liu
Q, Ma ZF, Liu YY and Yang YQ: Recombinant rat CC10 protein inhibits
PDGF-induced airway smooth muscle cells proliferation and
migration. Biomed Res Int. 2013:6909372013. View Article : Google Scholar : PubMed/NCBI
|
35
|
Linnoila RI, Szabo E, DeMayo F, Witschi H,
Sabourin C and Malkinson A: The role of CC10 in pulmonary
carcinogenesis: From a marker to tumor suppression. Ann N Y Acad
Sci. 923:249–267. 2000. View Article : Google Scholar : PubMed/NCBI
|
36
|
Snyder JC, Reynolds SD, Hollingsworth JW,
Li Z, Kaminski N and Stripp BR: Clara cells attenuate the
inflammatory response through regulation of macrophage behavior. Am
J Respir Cell Mol Biol. 42:161–171. 2010. View Article : Google Scholar : PubMed/NCBI
|
37
|
Ann DK, Wechsler A, Lin HH and Wang E:
Isoproterenol downregulation of statin-related gene expression in
the rat parotid gland. J Cell Sci. 100:641–647. 1991.PubMed/NCBI
|
38
|
Apostolopoulou M, Corsini A and Roden M:
The role of mitochondria in statin-induced myopathy. Eur J Clin
Invest. 45:745–754. 2015. View Article : Google Scholar : PubMed/NCBI
|
39
|
McGuire TR, Kalil AC, Dobesh PP, Klepser
DG and Olsen KM: Anti-inflammatory effects of rosuvastatin in
healthy subjects: A prospective longitudinal study. Curr Pharm Des.
20:1156–1160. 2014. View Article : Google Scholar : PubMed/NCBI
|
40
|
Watt SA, Purdie KJ, den Breems NY, Dimon
M, Arron ST, McHugh AT, Xue DJ, Dayal JH, Proby CM, Harwood CA, et
al: Novel CARD11 mutations in human cutaneous squamous cell
carcinoma lead to aberrant NF-κB regulation. Am J Pathol.
185:2354–2363. 2015. View Article : Google Scholar : PubMed/NCBI
|
41
|
Harden JL, Lewis SM, Pierson KC,
Suárez-Fariñas M, Lentini T, Ortenzio FS, Zaba LC, Goldbach-Mansky
R, Bowcock AM and Lowes MA: CARD14 expression in dermal endothelial
cells in psoriasis. PLoS One. 9:e1112552014. View Article : Google Scholar : PubMed/NCBI
|
42
|
Liu Y, Wang Y, Shi H, Jia L, Cheng J, Cui
W, Li H, Li P and Du J: CARD9 mediates necrotic smooth muscle
cell-induced inflammation in macrophages contributing to neointima
formation of vein grafts. Cardiovasc Res. 108:148–158. 2015.
View Article : Google Scholar : PubMed/NCBI
|
43
|
Druilhe A, Srinivasula SM, Razmara M,
Ahmad M and Alnemri ES: Regulation of IL-1beta generation by
Pseudo-ICE and ICEBERG, two dominant negative caspase recruitment
domain proteins. Cell Death Differ. 8:649–657. 2001. View Article : Google Scholar : PubMed/NCBI
|
44
|
Lamkanfi M, Denecker G, Kalai M, D'hondt
K, Meeus A, Declercq W, Saelens X and Vandenabeele P: INCA, a novel
human caspase recruitment domain protein that inhibits
interleukin-1beta generation. J Biol Chem. 279:51729–51738. 2004.
View Article : Google Scholar : PubMed/NCBI
|
45
|
Hershey JW: Translational control in
mammalian cells. Annu Rev Biochem. 60:717–755. 1991. View Article : Google Scholar : PubMed/NCBI
|
46
|
Thornton S, Anand N, Purcell D and Lee J:
Not just for housekeeping: Protein initiation and elongation
factors in cell growth and tumorigenesis. J Mol Med (Berl).
81:536–548. 2003. View Article : Google Scholar : PubMed/NCBI
|
47
|
Lamberti A, Caraglia M, Longo O, Marra M,
Abbruzzese A and Arcari P: The translation elongation factor 1A in
tumorigenesis, signal transduction and apoptosis: Review article.
Amino Acids. 26:443–448. 2004. View Article : Google Scholar : PubMed/NCBI
|
48
|
Gross SR and Kinzy TG: Translation
elongation factor 1A is essential for regulation of the actin
cytoskeleton and cell morphology. Nat Struct Mol Biol. 12:772–778.
2005. View Article : Google Scholar : PubMed/NCBI
|
49
|
Chuang SM, Chen L, Lambertson D, Anand M,
Kinzy TG and Madura K: Proteasome-mediated degradation of
cotranslationally damaged proteins involves translation elongation
factor 1A. Mol Cell Biol. 25:403–413. 2005. View Article : Google Scholar : PubMed/NCBI
|
50
|
Lamberti A, Longo O, Marra M, Tagliaferri
P, Bismuto E, Fiengo A, Viscomi C, Budillon A, Rapp UR, Wang E, et
al: C-Raf antagonizes apoptosis induced by IFN-alpha in human lung
cancer cells by phosphorylation and increase of the intracellular
content of elongation factor 1A. Cell Death Differ. 14:952–962.
2007.PubMed/NCBI
|
51
|
Kobayashi Y and Yonehara S: Novel cell
death by downregulation of eEF1A1 expression in tetraploids. Cell
Death Differ. 16:139–150. 2009. View Article : Google Scholar : PubMed/NCBI
|
52
|
Wang Y, Kavran JM, Chen Z, Karukurichi KR,
Leahy DJ and Cole PA: Regulation of S-adenosylhomocysteine
hydrolase by lysine acetylation. J Biol Chem. 289:31361–31372.
2014. View Article : Google Scholar : PubMed/NCBI
|
53
|
Rodríguez-Mateos M, García-Gómez JJ,
Francisco-Velilla R, Remacha M, de la Cruz J and Ballesta JP: Role
and dynamics of the ribosomal protein P0 and its related
trans-acting factor Mrt4 during ribosome assembly in Saccharomyces
cerevisiae. Nucleic Acids Res. 37:7519–7532. 2009. View Article : Google Scholar : PubMed/NCBI
|
54
|
Ji B, La Y, Gao L, Zhu H, Tian N, Zhang M,
Yang Y, Zhao X, Tang R, Ma G, et al: A comparative proteomics
analysis of rat mitochondria from the cerebral cortex and
hippocampus in response to antipsychotic medications. J Proteome
Res. 8:3633–3641. 2009. View Article : Google Scholar : PubMed/NCBI
|
55
|
Davidsen PK, Herbert JM, Antczak P, Clarke
K, Ferrer E, Peinado VI, Gonzalez C, Roca J, Egginton S, Barberá JA
and Falciani F: A systems biology approach reveals a link between
systemic cytokines and skeletal muscle energy metabolism in a
rodent smoking model and human COPD. Genome Med. 6:592014.
View Article : Google Scholar : PubMed/NCBI
|
56
|
Meech R, Miners JO, Lewis BC and Mackenzie
PI: The glycosidation of xenobiotics and endogenous compounds:
Versatility and redundancy in the UDP glycosyltransferase
superfamily. Pharmacol Ther. 134:200–218. 2012. View Article : Google Scholar : PubMed/NCBI
|
57
|
Vu D, Tellez-Corrales E, Yang J, Qazi Y,
Shah T, Naraghi R, Hutchinson IV and Min DI: Genetic polymorphisms
of UGT1A8, UGT1A9 and HNF-1α and gastrointestinal symptoms in renal
transplant recipients taking mycophenolic acid. Transpl Immunol.
29:155–161. 2013. View Article : Google Scholar : PubMed/NCBI
|
58
|
Sun D, Jones NR, Manni A and Lazarus P:
Characterization of raloxifene glucuronidation: Potential role of
UGT1A8 genotype on raloxifene metabolism in vivo. Cancer Prev Res
(Phila). 6:719–730. 2013. View Article : Google Scholar : PubMed/NCBI
|
59
|
Miksits M, Maier-Salamon A, Vo TP, Sulyok
M, Schuhmacher R, Szekeres T and Jäger W: Glucuronidation of
piceatannol by human liver microsomes: Major role of UGT1A1, UGT1A8
and UGT1A10. J Pharm Pharmacol. 62:47–54. 2010. View Article : Google Scholar : PubMed/NCBI
|
60
|
D'Anna C, Cigna D, Costanzo G, Ferraro M,
Siena L, Vitulo P, Gjomarkaj M and Pace E: Cigarette smoke alters
cell cycle and induces inflammation in lung fibroblasts. Life Sci.
126:10–18. 2015. View Article : Google Scholar : PubMed/NCBI
|
61
|
Daniel LL, Daniels CR, Harirforoosh S,
Foster CR, Singh M and Singh K: Deficiency of ataxia telangiectasia
mutated kinase delays inflammatory response in the heart following
myocardial infarction. J Am Heart Assoc. 3:e0012862014. View Article : Google Scholar : PubMed/NCBI
|
62
|
Schuliga M: NF-kappaB signaling in chronic
inflammatory airway disease. Biomolecules. 5:1266–1283. 2015.
View Article : Google Scholar : PubMed/NCBI
|
63
|
Pal S, Bhattacharjee A, Ali A, Mandal NC,
Mandal SC and Pal M: Chronic inflammation and cancer: Potential
chemoprevention through nuclear factor kappa B and p53 mutual
antagonism. J Inflamm (Lond). 11:232014. View Article : Google Scholar : PubMed/NCBI
|
64
|
Osorio FG, Bárcena C, Soria-Valles C,
Ramsay AJ, de Carlos F, Cobo J, Fueyo A, Freije JM and López-Otín
C: Nuclear lamina defects cause ATM-dependent NF-κB activation and
link accelerated aging to a systemic inflammatory response. Genes
Dev. 26:2311–2324. 2012. View Article : Google Scholar : PubMed/NCBI
|