1
|
Watson PH, Wilson-McManus JE, Barnes RO,
Barnes, Giesz SC, Png A, Hegele RG, Brinkman JN, Mackenzie IR,
Huntsman DG, Junker A, et al: Evolutionary concepts in
biobanking-the BC BioLibrary. J Transl Med. 7:952009. View Article : Google Scholar : PubMed/NCBI
|
2
|
Nishihara H: Clinical biobank: A novel
system to support cancer clinical sequencing in Japan. Rinsho
Byori. 65:167–172. 2017.(In Japanese). PubMed/NCBI
|
3
|
Ginsburg GS, Burke TW and Febbo P:
Centralized biorepositories for genetic and genomic research. JAMA.
299:1359–1361. 2008. View Article : Google Scholar : PubMed/NCBI
|
4
|
Baker M: Biorepositories: Building better
biobanks. Nature. 486:141–146. 2012. View
Article : Google Scholar : PubMed/NCBI
|
5
|
Carithers LJ, Agarwal R, Guan P, Odeh H,
Sachs MC, Engel KB, Greytak SR, Barcus M, Soria C, Jason Lih CJ, et
al: The biospecimen preanalytical variables program: A multiassay
comparison of effects of delay to fixation and fixation duration on
nucleic acid quality. Arch Pathol Lab Med. 143:1106–1118. 2019.
View Article : Google Scholar : PubMed/NCBI
|
6
|
Compton CC, Robb JA, Anderson MW, Berry
AB, Birdsong GG, Bloom KJ, Branton PA, Crothers JW, Cushman-Vokoun
AM, Hicks DG, et al: Preanalytics and precision pathology:
Pathology practices to ensure molecular integrity of cancer patient
biospecimens for precision medicine. Arch Pathol Lab Med.
143:1346–1363. 2019. View Article : Google Scholar : PubMed/NCBI
|
7
|
Kahn N, Riedlinger J, Roessler M, Rabe C,
Lindner M, Koch I, Schott-Hildebrand S, Herth FJ, Schneider MA,
Meister M and Muley TR: Blood-sampling collection prior to surgery
may have a significant influence upon biomarker concentrations
measured. Clin Proteomics. 12:192015. View Article : Google Scholar : PubMed/NCBI
|
8
|
Galissier T, Schneider C, Nasri S,
Kanagaratnam L, Fichel C, Coquelet C, Diebold MD, Kianmanesh R,
Bellon G, Dedieu S, et al: Biobanking of fresh-frozen human
adenocarcinomatous and normal colon tissues: Which parameters
influence RNA quality? PLoS One. 11:e01543262016. View Article : Google Scholar : PubMed/NCBI
|
9
|
Zhou JH, Sahin AA and Myers JN: Biobanking
in genomic medicine. Arch Pathol Lab Med. 139:812–818. 2015.
View Article : Google Scholar : PubMed/NCBI
|
10
|
Olsen J, Kirkeby LT, Eiholm S, Jess P,
Troelsen JT, Gögenür I and Olsen J: Impact of in vivo ischemic time
on RNA quality-experiences from a colon cancer biobank. Biopreserv
Biobank. 13:255–262. 2015. View Article : Google Scholar : PubMed/NCBI
|
11
|
Zheng XH, Zhang SD, Zhang PF, Li XZ, Hu
YZ, Tian T, Zhu L, Wang RZ and Jia WH: Tumor cell content and RNA
integrity of surgical tissues from different types of tumors and
its correlation with ex vivo and in vivo ischemia. Ann Surg Oncol.
25:3764–3770. 2018. View Article : Google Scholar : PubMed/NCBI
|
12
|
Betsou F, Lehmann S, Ashton G, Barnes M,
Benson EE, Coppola D, DeSouza Y, Eliason J, Glazer B, Guadagni F,
et al: Standard preanalytical coding for biospecimens: Defining the
sample PREanalytical code. Cancer Epidemiol Biomarkers Prev.
19:1004–1011. 2010. View Article : Google Scholar : PubMed/NCBI
|
13
|
Mazzei M, Vascellari M, Zanardello C,
Melchiotti E, Vannini S, Forzan M, Marchetti V, Albanese F and
Abramo F: Quantitative real time polymerase chain reaction
(qRT-PCR) and RNAscope in situ hybridization (RNA-ISH) as effective
tools to diagnose feline herpesvirus-1-associated dermatitis. Vet
Dermatol. 30:491–e147. 2019. View Article : Google Scholar : PubMed/NCBI
|
14
|
Livak KJ and Schmittgen TD: Analysis of
relative gene expression data using real-time quantitative PCR and
the 2(-Delta Delta C(T)) method. Methods. 25:402–408. 2001.
View Article : Google Scholar : PubMed/NCBI
|
15
|
Micke P, Ohshima M, Tahmasebpoor S, Ren
ZP, Ostman A, Pontén F and Botling J: Biobanking of fresh frozen
tissue: RNA is stable in nonfixed surgical specimens. Lab Invest.
86:202–211. 2006. View Article : Google Scholar : PubMed/NCBI
|
16
|
Rudloff U, Bhanot U, Gerald W, Klimstra
DS, Jarnagin WR, Brennan MF and Allen PJ: Biobanking of human
pancreas cancer tissue: Impact of ex-vivo procurement times on RNA
quality. Ann Surg Oncol. 17:2229–2236. 2010. View Article : Google Scholar : PubMed/NCBI
|
17
|
Bao WG, Zhang X, Zhang JG, Zhou WJ, Bi TN,
Wang JC, Yan WH and Lin A: Biobanking of fresh-frozen human colon
tissues: Impact of tissue ex-vivo ischemia times and storage
periods on RNA quality. Ann Surg Oncol. 20:1737–1744. 2013.
View Article : Google Scholar : PubMed/NCBI
|
18
|
Lee SM, Schelcher C, Thasler R, Schiergens
TS and Thasler WE: Pre-analytical determination of the effect of
extended warm or cold ischaemia on RNA stability in the human ileum
mucosa. PLoS One. 10:e01382142015. View Article : Google Scholar : PubMed/NCBI
|
19
|
Jeck WR, Sorrentino JA, Wang K, Slevin MK,
Burd CE, Liu J, Marzluff WF and Sharpless NE: Circular RNAs are
abundant, conserved, and associated with ALU repeats. RNA.
19:141–157. 2013. View Article : Google Scholar : PubMed/NCBI
|
20
|
Sun H, Sun R, Hao M, Wang Y, Zhang X, Liu
Y and Cong X: Effect of duration of ex vivo ischemia time and
storage period on RNA quality in biobanked human renal cell
carcinoma tissue. Ann Surg Oncol. 23:297–304. 2016. View Article : Google Scholar : PubMed/NCBI
|
21
|
Zheng H, Tao YP, Chen FQ, Li HF, Zhang ZD,
Zhou XX, Yang Y and Zhou WP: Temporary ischemia time before snap
freezing is important for maintaining high-integrity RNA in
hepatocellular carcinoma tissues. Biopreserv Biobank. 17:425–432.
2019. View Article : Google Scholar : PubMed/NCBI
|
22
|
Guerrera F, Tabbo F, Bessone L, Maletta F,
Gaudiano M, Ercole E, Annaratone L, Todaro M, Boita M, Filosso PL,
et al: The influence of tissue ischemia time on RNA integrity and
patient-derived xenografts (PDX) engraftment rate in a non-small
cell lung cancer (NSCLC) biobank. PLoS One. 11:e01451002016.
View Article : Google Scholar : PubMed/NCBI
|
23
|
Castells Domingo X, Ferrer-Font L, Davila
M, Candiota AP, Simões RV, Fernández-Coello A, Gabarrós A, Boluda
S, Barceló A, Ariño J and Arús C: Improving ribosomal RNA integrity
in surgically resected human brain tumor biopsies. Biopreserv
Biobank. 14:156–164. 2016. View Article : Google Scholar : PubMed/NCBI
|
24
|
Gonzalez-Herrera L, Valenzuela A, Marchal
JA, Lorente JA and Villanueva E: Studies on RNA integrity and gene
expression in human myocardial tissue, pericardial fluid and blood,
and its postmortem stability. Forensic Sci Int. 232:218–228. 2013.
View Article : Google Scholar : PubMed/NCBI
|
25
|
Song SY, Jun J, Park M, Park SK, Choi W,
Park K, Jang KT and Lee M: Biobanking of fresh-frozen cancer
tissue: RNA is stable independent of tissue type with less than 1
hour of cold ischemia. Biopreserv Biobank. 16:28–35. 2018.
View Article : Google Scholar : PubMed/NCBI
|
26
|
Wang Z, Wang Y, Ye J, Lu X, Cheng Y, Xiang
L, Chen L, Feng W, Shi H, Yu X, et al: bFGF attenuates endoplasmic
reticulum stress and mitochondrial injury on myocardial
ischaemia/reperfusion via activation of PI3K/Akt/ERK1/2 pathway. J
Cell Mol Med. 19:595–607. 2015. View Article : Google Scholar : PubMed/NCBI
|
27
|
Chen CM, Wu CT, Yang TH, Chang YA, Sheu ML
and Liu SH: Green tea catechin prevents hypoxia/reperfusion-evoked
oxidative stress-regulated autophagy-activated apoptosis and cell
death in microglial cells. J Agric Food Chem. 64:4078–4085. 2016.
View Article : Google Scholar : PubMed/NCBI
|
28
|
Mihaylova MM and Shaw RJ: The AMPK
signalling pathway coordinates cell growth, autophagy and
metabolism. Nat Cell Biol. 13:1016–1023. 2011. View Article : Google Scholar : PubMed/NCBI
|
29
|
Qi D and Young LH: AMPK: Energy sensor and
survival mechanism in the ischemic heart. Trends Endocrinol Metab.
26:422–429. 2015. View Article : Google Scholar : PubMed/NCBI
|
30
|
Hers I, Vincent EE and Tavare JM: Akt
signalling in health and disease. Cell Signal. 23:1515–1527. 2011.
View Article : Google Scholar : PubMed/NCBI
|
31
|
Manning BD and Cantley LC: AKT/PKB
signaling: Navigating downstream. Cell. 129:1261–1274. 2007.
View Article : Google Scholar : PubMed/NCBI
|
32
|
Avalos Y, Canales J, Bravo-Sagua R,
Criollo A, Lavandero S and Quest AF: Tumor suppression and
promotion by autophagy. Biomed Res Int. 2014:6039802014. View Article : Google Scholar : PubMed/NCBI
|
33
|
Iurlaro R and Munoz-Pinedo C: Cell death
induced by endoplasmic reticulum stress. FEBS J. 283:2640–2652.
2016. View Article : Google Scholar : PubMed/NCBI
|
34
|
Saggioro FP, Neder L, Stavale JN,
Paixão-Becker ANP, Malheiros SMF, Soares FA, Pittella JEH, Matias
CCMS, Colli BO, Carlotti CG Jr and Franco M: Fas, FasL, and cleaved
caspases 8 and 3 in glioblastomas: A tissue microarray-based study.
Pathol Res Pract. 210:267–273. 2014. View Article : Google Scholar : PubMed/NCBI
|
35
|
Schito L and Semenza GL: Hypoxia-inducible
factors: Master regulators of cancer progression. Trends Cancer.
2:758–770. 2016. View Article : Google Scholar : PubMed/NCBI
|
36
|
LaGory EL and Giaccia AJ: The
ever-expanding role of HIF in tumour and stromal biology. Nat Cell
Biol. 18:356–365. 2016. View Article : Google Scholar : PubMed/NCBI
|
37
|
Kurokawa M and Kornbluth S: Caspases and
kinases in a death grip. Cell. 138:838–854. 2009. View Article : Google Scholar : PubMed/NCBI
|
38
|
Lange N, Unger FT, Schoppler M, Pursche K,
Juhl H and David KA: Identification and validation of a potential
marker of tissue quality using gene expression analysis of human
colorectal tissue. PLoS One. 10:e01339872015. View Article : Google Scholar : PubMed/NCBI
|
39
|
Pietrocola F, Izzo V, Niso-Santano M,
Vacchelli E, Galluzzi L, Maiuri MC and Kroemer G: Regulation of
autophagy by stress-responsive transcription factors. Semin Cancer
Biol. 23:310–322. 2013. View Article : Google Scholar : PubMed/NCBI
|
40
|
Verzella D, Pescatore A, Capece D,
Vecchiotti D, Ursini MV, Franzoso G, Alesse E and Zazzeroni F:
Life, death, and autophagy in cancer: NF-κB turns up everywhere.
Cell Death Dis. 11:2102020. View Article : Google Scholar : PubMed/NCBI
|
41
|
Karar J and Maity A: PI3K/AKT/mTOR pathway
in angiogenesis. Front Mol Neurosci. 4:512011. View Article : Google Scholar : PubMed/NCBI
|
42
|
Nazarko VY and Zhong Q: ULK1 targets
beclin-1 in autophagy. Nat Cell Biol. 15:727–728. 2013. View Article : Google Scholar : PubMed/NCBI
|
43
|
Kim SJ, Dix DJ, Thompson KE, Murrell RN,
Schmid JE, Gallagher JE and Rockett JC: Effects of storage, RNA
extraction, genechip type, and donor sex on gene expression
profiling of human whole blood. Clin Chem. 53:1038–1045. 2007.
View Article : Google Scholar : PubMed/NCBI
|
44
|
Becker N and Lockwood CM: Pre-analytical
variables in miRNA analysis. Clin Biochem. 46:861–868. 2013.
View Article : Google Scholar : PubMed/NCBI
|
45
|
Willemse EA and Teunissen CE: Biobanking
of cerebrospinal fluid for biomarker analysis in neurological
diseases. Adv Exp Med Biol. 864:79–93. 2015. View Article : Google Scholar : PubMed/NCBI
|