Lentivirus‑mediated RNA interference inhibits the tumorigenicity of cluster of differentiation 44+ tumor cells in hypopharyngeal cancer
- Authors:
- Published online on: August 28, 2017 https://doi.org/10.3892/ol.2017.6838
- Pages: 5354-5360
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Copyright: © Shen et al. This is an open access article distributed under the terms of Creative Commons Attribution License.
Abstract
Introduction
Cancer stem cells, a small number of cells with the potential for unlimited self-renewal, have been recently theorized to play a substantial role in tumor growth and the promotion of tumor formation (1). Cancer stem cells have already been identified in numerous types of carcinoma, including brain neoplasms, leukemia and cancer of the breast, colon and lung (2–10). In malignant head and neck tumor stem cells, cluster of differentiation (CD)133 has been reported to be a biological marker of cancer stem cells in laryngeal cancer (11) and nasopharyngeal carcinoma (12); CD133, CD44 and aldehyde dehydrogenase 1 are all cancer stem cell markers in oral carcinoma (13,14). However, there have been few studies investigating the role of cancer stem cells in hypopharyngeal carcinoma. CD44+ cells from the hypopharyngeal cancer FaDu cell line were previously found to have a higher proliferative capacity and tumorigenic potential, which suggests that CD44+ hypopharyngeal tumor cells may be cancer stem cells, or that cancer stem cells in hypopharyngeal cancer exist in the CD44+ tumor cell population (15). To determine whether the CD44 gene serves a notable role in the cancer stem cell properties of CD44+ cells, the tumorigenicity of CD44+ cells was assessed in the FaDu cell line following the silencing of CD44 gene expression using recombinant lentiviral vectors that specifically knocked down the expression of CD44. The viability of FaDu cells in vitro and their tumorigenicity in vivo were subsequently examined to determine whether CD44 confers the biological characteristics of cancer stem cells in CD44+ cells in hypopharyngeal cancer.
Materials and methods
Design and construction of CD44 short hairpin RNA (shRNA) -expressing lentivirus
The hU6-MCS-CMV-EGFP-iRNA plasmid (Shanghai Genechem Co., Ltd., Shanghai, China) was used to generate the CD44 shRNA-expressing lentivirus. According to The National Center for Biotechnology Information GenBank (https://www.ncbi.nlm.nih.gov/genbank/) published human CD44 mRNA (NM_00100139) sequence information and RNA interference sequence design principles, four interfering target sequences were designed (Table I). Subsequently, target sequences were used to carried out BLAST (https://blast.ncbi.nlm.nih.gov/Blast.cgi) comparison in human genome data to exclude the other similar nucleotide sequences. For each targeting sequence, two oligonucleotides containing the sense and antisense of the targeting sequences (with a loop sequence in between) were synthesized (Table II). The two oligonucleotides were resolved together in water at 90°C for 15 min and then placed at room temperature to cool down and form double-stranded DNA. The double-stranded DNA was ligated into the hU6-MCS-CMV-EGFP-iRNA plasmid digested with AgeI and EcoRI restriction endonucleases (New England Biolabs, Inc., Ipswich, MA, USA) to generate the CD44 shRNA-expressing lentiviral vectors: LV-GFP-CD44-shRNA-1, LV-GFP-CD44-shRNA-2, LV-GFP-CD44-shRNA-3 and LV-GFP-CD44-shRNA-4. The ligated vectors were transformed into competent Escherichia coli DH5α cells (Invitrogen; Thermo Fisher Scientific, Inc., Waltham, MA, USA), and a single colony was selected for PCR amplification. The reaction mixture volume of 20 µl, comprising 0.4 µl upstream and downstream primers (upstream: 5′-CCATGATTCCTTCATATTTGC-3′; downstream: 5′-CGCGTGGATAACCGTATTAC-3′), 15.2 µl ddH2O, 2 µl 10X buffer (Takara Bio Inc., Japan), 0.8 µl 2.5 mM dNTP Mixture (Takara Bio Inc., Otsu, Japan), 0.2 µl Taq DNA polymerase (Takara Bio Inc., Japan), and 1 µl 10 ng/µl template. The PCR reaction thermocycler conditions were as follows: Pre-denaturing at 94°C for 30 sec, denaturing at 94°C for 30 sec, annealing at 55°C for 30 sec, extending at 72°C for 40 sec, then 72°C for a final 6 min. The total PCR process was 30 cycles. Reactions were performed with the Applied Biosystems Veriti Thermal Cycler (Thermo Fisher Scientific, Inc.). The QIAGEN Plasmid Midi Kit (Qiagen GbmH, Hilden, Germany) was used to extract the plasmid, which was then sent to Shanghai Genechem Co., Ltd., (Shanghai, China) for nucleotide sequencing to verify the correct constructs (16). 293T cells were cultured in RPMI-1640 medium (Gibco; Thermo Fisher Scientific, Inc.) with 10% fetal bovine serum (Gibco; Thermo Fisher Scientific, Inc.). Recombinant lentiviruses were produced by co-transfecting 293T cells with the recombinant lentiviral vector and packaging plasmids (Shanghai Genechem Co., Ltd.) (pHelper 1.0, including gag/pol, and pHelper 2.0, including vesicular stomatitis virus G) using the cationic lipid complex method (Lipofectamine 2000; Invitrogen; Thermo Fisher Scientific, Inc.). The culture supernatants containing the produced viruses were harvested 48 h after transfection and concentrated by centrifugation at 4,000 × g at 4°C for 10–15 min. Aliquots of the concentrated viruses were stored at 80°C for subsequent use. The infectious titer was measured using a proportional dilution method with 293T cells and reverse transcription-quantitative polymerase chain reaction (RT-qPCR).
Table II.Sequences of oligonucleotides for constructing recombinant lentiviral vectors expressing shRNAs. |
RT-qPCR
Total RNA from 293T or FaDu cells was extracted using TRIzol® (Takara Bio Inc.), and reversed transcribed according to the manufacturer's protocol. cDNA samples were amplified using SYBR® Premix Ex Taq™ (Takara Bio Inc.). The primer sequences were used as follows: CD44: 5′-AGGCTGAGACAGGAGGTTA-3′ (forward); 5′-CCTCCCTTATTTCTATCGTG-3′ (reverse); GAPDH: 5′-GGTGAAGGTCGGTGGAACG-3′ (forward); 5′-CTCGCTCCTGGAAGATGGTG-3′ (reverse). The PCR reaction conditions were as follows: 95°C pre-denaturing for 30 sec, 95°C denaturing for 5 sec, 60°C annealing for 34 sec for 40 cycles, then 95°C denaturing for 15 sec, 60°C annealing for 60 sec, and 95°C for a final 15 sec. Reactions were performed with the ABI PRISM 7500 System (Thermo Fisher Scientific, Inc.). Gene expression in each sample was normalized to GADPH expression. Statistical analyses were performed on qPCR results obtained through the 2−ΔΔCq method (17). The experiment was repeated in triplicate.
Screening of shRNA-expressing lentiviruses
FaDu cells were subcultured at a density of 1×106 cells per well into 6-well tissue culture plates. The experiment was divided into a low multiplicity of infection (MOI) group and a high MOI group. There were also six subgroups: A blank control group [CON, infected with PBS (0.01 mol/l) alone]; a negative virus control group [NC, infected with the negative control lentiviral vector (8E + 8 TU/ml)]; and four RNAi groups (KD1, infected with the shRNA1-CD44 lentiviral vector; KD2, infected with the shRNA2-CD44 lentiviral vector; KD3, infected with the shRNA3-CD44 lentiviral vector; and KD4, infected with the shRNA4-CD44 lentiviral vector; all shRNA sequences are shown in Table II). Following incubation at 37°C for 48 h of culture, cells were infected with specific or negative control lentiviral vectors, at the aforementioned MOI. Cells were examined by fluorescence microscopy 72 h after lentiviral transduction. On day 5 after transduction, the cells were harvested to determine the efficiency of CD44 silencing by RT-qPCR. The cells were firstly washed with PBS and digested with 0.25% trypsin at 37°C for 3 min. RPMI-1640 medium (1 ml) with 10% FBS to stop digestion was then added, followed by centrifugation at 500 × g for 5 min at 28°C. In the RNAi group, the most efficient shRNA-CD44 lentiviral vector (hereafter termed KD) was used in the following in vitro and in vivo experiments.
Cell culture
The FaDu and 293T cells, obtained from the Institute of Biochemistry and Cell Biology, Shanghai Institute for Biological Sciences, Chinese Academy of Sciences (Shanghai, China), were recovered from frozen storage and cultured to 70–80% confluence in RPMI-1640 medium (Gibco; Thermo Fisher Scientific, Inc.), supplemented with 10% fetal bovine serum (Gibco; Thermo Fisher Scientific, Inc.) in an incubator maintained with 5% CO2 at a temperature of 37°C. The cells were then washed with PBS (Gibco; Thermo Fisher Scientific, Inc.) and digested with 0.25% trypsin (Gibco; Thermo Fisher Scientific, Inc.).
FaDu cell viability assay
The FaDu cells from the CON, NC and KD groups were seeded at a density of 5,000 cells/well in 96-well plates. Cell viability assays were performed at days 1, 3, 5 and 7 using an MTT assay (Sigma-Aldrich, Merck KGaA, Darmstadt, Germany). Viable cells were quantified by measuring the absorption spectra at 490 nm with a Versamax microplate reader (Molecular Devices, LLC, Sunnyvale, CA, USA). The wells were observed daily using an Olympus CKX41 light microscope (Olympus Corporation, Tokyo, Japan). A total of 6 duplicate wells were used for each group. The samples were loaded into 96-well plates and the optical density values were measured at 490 nm with the spectrophotometer every 48 h. Growth curves were prepared using the mean values.
In vivo tumorigenicity assay of FaDu cells
A total of 20 non-obese diabetic/severe combined immunodeficient (NOD/SCID) mice (6 weeks of age; weight, 20–25 g) were obtained from Shanghai Si Laike Experimental Animals (Shanghai, China). NOD/SCID mice consisted of equal numbers of males and females. Food and water were available ad libitum and the mice were kept in standard laboratory conditions. Mice were maintained at a temperature of 23±2°C, 65% humidity and 12-h light/dark cycles. Animals were randomly divided into three groups: A blank control group (CON, injected with FaDu cells infected with PBS alone; n=8), a negative virus control group (NC, injected with FaDu cells infected with the negative control lentiviral vector; n=4) and an RNAi group (KD, injected with FaDu cells infected with the RNAi-CD44 lentiviral vector; n=8). Cells (1×106) were suspended in 0.1 ml PBS and injected into the hypodermis of the right armpit of the NOD/SCID mice. Twice a week, the injection site of the NOD/SCID mice was palpated to check for tumor formation and growth. A total of 7 weeks after the injection (when the tumor size was ~1 cm in diameter), the mice were sacrificed using carbon dioxide euthanasia. The flow rate of CO2 was 28% of the chamber volume/minute, and the volume of the cage was 294×190×130 mm. The final concentration of CO2 was 80%. Euthanasia was confirmed through the disappearance of physiological responses such as corneal reflexes, and the lack of detectable heart beat for 1 min. Tumor nodules were immediately extracted from the animals. The long axis (a) and short axis (b) of all tumors were measured and the tumor volume (V) was calculated as follows: V = ab2 / 2. Finally, all tumors were histopathologically examined and diagnosed by two senior pathologists. The animal experiments were approved by the Animal Ethics Committee of Xinhua Hospital, Shanghai Jiao Tong University School of Medicine (Shanghai, China).
Statistical analysis
Data are expressed as the mean ± standard deviation, and were analyzed with SAS version 9.13 software (SAS Institute Inc., Cary, NC, USA). Statistical analyses were performed on RT-qPCR results obtained through the 2−ΔΔCq method. The distribution of tumor volumes was analyzed for normality using the Shapiro-Wilk test. The comparison of mean tumor volumes was conducted using one-way analysis of variance followed by LSD post-hoc test. Fisher's exact test was used to determine the difference in the number of tumorigenic mice between two groups. P<0.05 was considered to indicate a statistically significant difference.
Results
Verification of recombinant lentiviral vectors targeting CD44
The four plasmids containing the four CD44-targeting shRNA clones, with the correct insertion and orientation of the shRNA fragment of the hU6-MCS-CMV-EGFP expression vector, were detected by PCR (Fig. 1). These recombinant lentiviral vectors (Lv-shRNA-CD44) were used to specifically knockdown CD44 expression.
Screening of lentiviral vectors targeting CD44
FaDu cells were transfected with Lv-shRNA-CD44 vectors (KD1, KD2, KD3 and KD4). Cells were examined by fluorescence microscopy 72 h after lentivirus transduction (Fig. 2). On day 5 after transduction, cells were harvested to determine the efficiency of CD44 silencing by RT-qPCR (Figs. 3 and 4; Tables III and IV). Compared with the NC group, the most effective knockdown efficiency for the CD44 gene was >70%, using KD2 at a titer of 8E+8 TU/ml (P<0.01). Thus KD2, the most efficient recombinant vector, was used in subsequent experiments in vitro and in vivo.
Table III.Expression level of CD44 mRNA 5 days after target cell transfection with the low multiplicity of infection. |
Table IV.Expression level of CD44 mRNA 5 days after target cell transfection with the high multiplicity of infection. |
Proliferative capabilities of FaDu cells following CD44 gene-knockdown in vitro
To evaluate the proliferative capabilities of FaDu cells in vitro following CD44 gene silencing, FaDu cells from the CON, NC and RNAi groups were seeded at the same density in 96-well plates, and the numbers of viable cells were quantified at days 1, 3, 5 and 7 using the MTT assay. This assay revealed distinct differences in cell growth curves in vitro between the RNAi group and the control groups. Although the growth rate was similar between CON and NC groups, the RNAi group had a significantly slower proliferation rate (P<0.05; Fig. 5).
Tumorigenicity of FaDu cells following CD44 gene knockdown in vivo
To assess the tumorigenic ability of FaDu cells in vivo, 1×106 cells from each of the three groups were injected into the right armpit hypodermis of NOD/SCID mice. All mice were monitored for 7 weeks (Fig. 6; Table V). There was no significant difference in tumorigenesis between the CON and NC groups (Fisher's exact test, χ2=1.726, P>0.05), although there was a significant difference in tumorigenesis between the CON and RNAi groups (Fisher's exact test, χ2=7.809, P<0.05; Table VI). Mice from the RNAi group required a longer incubation period to develop tumors than mice from the CON group. In addition, the mean tumor volume in the CON group (1,554.56±216.83 mm3) was not significantly different to the mean tumor volume in the NC group (1,512.38±239.86 mm3) (t=0.31, P>0.05), while the mean tumor volume in the RNAi group (1,061.00±185.76 mm3) was significantly smaller than the CON group (t=3.47, P<0.05) (Table VII). The tumorigenic ability of FaDu hypopharyngeal cancer cells was therefore significantly weaker following knockdown of the CD44 gene. These observations suggest that the CD44 gene may serve an important role in the cancer stem cell properties of CD44+ cells in the FaDu hypopharyngeal cancer cell line. A pathological study confirmed that all tumors were poorly differentiated squamous cell carcinomas with cellular heterogeneity (Fig. 7).
Discussion
Recent data have indicated that tumor stem cells exist in numerous types of malignant tumors (2–10), including head and neck malignant tumors (11–14), and are closely associated with the occurrence, development and metastasis of malignant tumors (14,18–21). Hypopharyngeal carcinoma is a head and neck malignant tumor with one of the poorest prognoses, and the mechanisms of its tumor development and progression are unclear (22). Results from a previous study demonstrated that CD44+ cells in hypopharyngeal cancer had a stronger proliferative capability than CD44− cells and a higher tumorigenic potential, indicating that cancer stem cells in hypopharyngeal cancer may exist in the CD44+ tumor cell population, or that CD44+ cells may be hypopharyngeal cancer stem cells (15). To investigate whether the CD44 gene confers the biological characteristics of CD44+ cancer stem cells in hypopharyngeal cancer, the tumorigenicity of CD44+ cells required the knockout or knockdown of the CD44 gene. Previous studies have demonstrated that RNAi is an economical, fast and highly efficient technique for knocking down gene expression (23–26). Thus, RNAi technology was used to suppress the expression of CD44 in the present study.
To confirm the role of CD44 in cancer stem cells in hypopharyngeal cancer further, RNAi technology was used to knockdown CD44 gene expression in FaDu hypopharyngeal cancer cells and any changes in their tumorigenicity were assessed. Following RNAi of the CD44 gene, the expression level of CD44 mRNA was significantly decreased, with a silencing efficiency >70% (reflective of successful gene silencing). The proliferative capacities of FaDu cells in vitro following CD44-silencing differed between the KD group and the CON or NC groups, which indicated that FaDu cells have a slower growth rate following CD44 gene-knockdown. Subsequent to the injection of FaDu cells into NOD/SCID mice, the tumorigenic rate in the KD group was significantly lower than the CON or NC group. Mice from the KD group also required a longer incubation period to develop tumors compared with mice in the CON or NC group. Furthermore, the tumor volumes in the KD group were markedly smaller than those in the CON or NC groups. In conclusion, the tumorigenic potential of FaDu cells became significantly weaker once CD44 expression was knocked down by RNAi. These observations suggest that the CD44 gene may play an important role in the cancer stem cell properties of CD44+ cells in hypopharyngeal cancer.
The results from the present study and a previous study (15) indicate that CD44 is an important biological marker of hypopharyngeal cancer stem cells. The results of the present study also indicate that FaDu cells retained proliferative abilities in vitro and tumorigenicity in vivo following CD44 gene-knockdown; thus, it cannot be considered that CD44 is a completely unique molecular biomarker for hypopharyngeal cancer or that all biological characteristics of stem cells in hypopharyngeal cancers are conferred by the CD44 gene. The results of the current study continue to suggest that CD44+ cells are notable cancer stem cells in hypopharyngeal cancer, and that certain biological characteristics of cancer stem cells in hypopharyngeal cancer are conferred by the CD44 gene. Other molecular markers of hypopharyngeal cancer stem cells, and the precise role of CD44 amongst all molecular markers of hypopharyngeal cancer stem cells, require further study.
Acknowledgements
The study was supported by grants from the National Natural Science Foundation of China (no. 81271088), the Natural Science Foundation of Shanghai (no. 11ZR1423600) and Shanghai Key Laboratory of Translational Medicine on Ear and Nose diseases Foundation (no. 14DZ2260300).
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