1
|
Jemal A, Siegel R, Xu J and Ward E: Cancer
statistics, 2010. CA Cancer J Clin. 60:277–300. 2010. View Article : Google Scholar : PubMed/NCBI
|
2
|
Torre LA, Bray F, Siegel RL, Ferlay J,
Lortet-Tieulent J and Jemal A: Global cancer statistics, 2012. CA
Cancer J Clin. 65:87–108. 2015. View Article : Google Scholar : PubMed/NCBI
|
3
|
DeSantis CE, Lin CC, Mariotto AB, Siegel
RL, Stein KD, Kramer JL, Alteri R, Robbins AS and Jemal A: Cancer
treatment and survivorship statistics, 2014. CA Cancer J Clin.
64:252–271. 2014. View Article : Google Scholar : PubMed/NCBI
|
4
|
Ling H, Vincent K, Pichler M, Fodde R,
Berindan-Neagoe I, Slack FJ and Calin GA: Junk DNA and the long
non-coding RNA twist in cancer genetics. Oncogene. 34:5003–5011.
2015. View Article : Google Scholar : PubMed/NCBI
|
5
|
Lipovich L, Johnson R and Lin CY: MacroRNA
underdogs in a microRNA world: Evolutionary, regulatory, and
biomedical significance of mammalian long non-protein-coding RNA.
Biochim Biophys Acta. 1799:597–615. 2010. View Article : Google Scholar : PubMed/NCBI
|
6
|
Fatica A and Bozzoni I: Long non-coding
RNAs: New players in cell differentiation and development. Nat Rev
Genet. 15:7–21. 2014. View
Article : Google Scholar
|
7
|
Qi P and Du X: The long non-coding RNAs, a
new cancer diagnostic and therapeutic gold mine. Mod Pathol.
26:155–165. 2013. View Article : Google Scholar
|
8
|
Yarmishyn AA, Batagov AO, Tan JZ, Sundaram
GM, Sampath P, Kuznetsov VA and Kurochkin IV: HOXD-AS1 is a novel
lncRNA encoded in HOXD cluster and a marker of neuroblas-toma
progression revealed via integrative analysis of noncoding
transcriptome. BMC Genomics. 15(Suppl 9): S72014. View Article : Google Scholar
|
9
|
Crea F, Watahiki A, Quagliata L, Xue H,
Pikor L, Parolia A, Wang Y, Lin D, Lam WL, Farrar WL, et al:
Identification of a long non-coding RNA as a novel biomarker and
potential therapeutic target for metastatic prostate cancer.
Oncotarget. 5:764–774. 2014. View Article : Google Scholar : PubMed/NCBI
|
10
|
Shen X, Xie B, Ma Z, Yu W, Wang W, Xu D,
Yan X, Chen B, Yu L, Li J, et al: Identification of novel long
non-coding RNAs in triple-negative breast cancer. Oncotarget.
6:21730–21739. 2015. View Article : Google Scholar : PubMed/NCBI
|
11
|
Sun J, Chen X, Wang Z, Guo M, Shi H, Wang
X, Cheng L and Zhou M: A potential prognostic long non-coding RNA
signature to predict metastasis-free survival of breast cancer
patients. Sci Rep. 5:165532015. View Article : Google Scholar : PubMed/NCBI
|
12
|
Meng J, Li P, Zhang Q, Yang Z and Fu S: A
four-long non-coding RNA signature in predicting breast cancer
survival. J Exp Clin Cancer Res. 33:842014. View Article : Google Scholar : PubMed/NCBI
|
13
|
Zhou M, Wang X, Shi H, Cheng L, Wang Z,
Zhao H, Yang L and Sun J: Characterization of long non-coding
RNA-associated ceRNA network to reveal potential prognostic lncRNA
biomarkers in human ovarian cancer. Oncotarget. Feb 3–2016.Epub
ahead of print. View Article : Google Scholar
|
14
|
Malek E, Jagannathan S and Driscoll JJ:
Correlation of long non-coding RNA expression with metastasis, drug
resistance and clinical outcome in cancer. Oncotarget. 5:8027–8038.
2014. View Article : Google Scholar : PubMed/NCBI
|
15
|
Chen F, Tian Y, Pang EJ, Wang Y and Li L:
MAlAT2-activated long noncoding RNA indicates a biomarker of poor
prognosis in gastric cancer. Cancer Gene Ther. Feb 27–2015.Epub
ahead of print. View Article : Google Scholar
|
16
|
Xue Y, Ma G, Gu D, Zhu L, Hua Q, Du M, Chu
H, Tong N, Chen J, Zhang Z, et al: Genome-wide analysis of long
noncoding RNA signature in human colorectal cancer. Gene.
556:227–234. 2015. View Article : Google Scholar
|
17
|
Hu Y, Chen HY, Yu CY, Xu J, Wang JL, Qian
J, Zhang X and Fang JY: A long non-coding RNA signature to improve
prognosis prediction of colorectal cancer. Oncotarget. 5:2230–2242.
2014. View Article : Google Scholar : PubMed/NCBI
|
18
|
Zhou M, Zhao H, Wang Z, et al:
Identification and validation of potential prognostic lncRNA
biomarkers for predicting survival in patients with multiple
myeloma. J Exp Clin Cancer Res. 34:1022015. View Article : Google Scholar : PubMed/NCBI
|
19
|
Rousseaux S, Debernardi A, Jacquiau B,
Vitte Al, Vesin A, Nagy-Mignotte H, Moro-Sibilot D, Brichon PY,
Lantuejoul S, Hainaut P, et al: Ectopic activation of germline and
placental genes identifies aggressive metastasis-prone lung
cancers. Sci Transl Med. 5:186ra662013. View Article : Google Scholar : PubMed/NCBI
|
20
|
Yamauchi M, Yamaguchi R, Nakata A, Kohno
T, Nagasaki M, Shimamura T, Imoto S, Saito A, Ueno K, Hatanaka Y,
et al: Epidermal growth factor receptor tyrosine kinase defines
critical prognostic genes of stage I lung adenocarcinoma. PloS One.
7:e439232012. View Article : Google Scholar : PubMed/NCBI
|
21
|
Botling J, Edlund K, Lohr M, Hellwig B,
Holmberg L, Lambe M, Berglund A, Ekman S, Bergqvist M, Pontén F, et
al: Biomarker discovery in non-small cell lung cancer: Integrating
gene expression profiling, meta-analysis, and tissue microarray
validation. Clin Cancer Res. 19:194–204. 2013. View Article : Google Scholar
|
22
|
Hou J, Aerts J, den Hamer B, van Ijcken W,
den Bakker M, Riegman P, van der leest C, van der Spek P, Foekens
JA, Hoogsteden HC, et al: Gene expression-based classification of
non-small cell lung carcinomas and survival prediction. PLoS One.
5:e103122010. View Article : Google Scholar : PubMed/NCBI
|
23
|
Irizarry RA, Bolstad BM, Collin F, Cope
LM, Hobbs B and Speed TP: Summaries of Affymetrix GeneChip probe
level data. Nucleic Acids Res. 31:e152003. View Article : Google Scholar : PubMed/NCBI
|
24
|
Risueño A, Fontanillo C, Dinger ME and De
las Rivas J: GATExplorer: Genomic and transcriptomic explorer;
mapping expression probes to gene loci, transcripts, exons and
ncRNAs. BMC Bioinformatics. 11:2212010. View Article : Google Scholar : PubMed/NCBI
|
25
|
Pang KC, Stephen S, Engström PG,
Tajul-Arifin K, Chen W, Wahlestedt C, Lenhard B, Hayashizaki Y and
Mattick JS: RNAdb - a comprehensive mammalian noncoding RNA
database. Nucleic Acids Res. 33:D125–D130. 2005. View Article : Google Scholar
|
26
|
Sun L, Luo H, Bu D, Zhao G, Yu K, Zhang C,
Liu Y, Chen R and Zhao Y: Utilizing sequence intrinsic composition
to classify protein-coding and long non-coding transcripts. Nucleic
Acids Res. 41:e1662013. View Article : Google Scholar : PubMed/NCBI
|
27
|
Simon R, Lam A, Li MC, Ngan M, Menenzes S
and Zhao Y: Analysis of gene expression data using BRB-ArrayTools.
Cancer Inform. 3:11–17. 2007.PubMed/NCBI
|
28
|
Ishwaran H and Kogalur UB: Consistency of
random survival forests. Stat Probab lett. 80:1056–1064. 2010.
View Article : Google Scholar : PubMed/NCBI
|
29
|
Bralten LB and French PJ: Genetic
alterations in glioma. Cancers. 3:1129–1140. 2011. View Article : Google Scholar : PubMed/NCBI
|
30
|
Subramanian A, Tamayo P, Mootha VK,
Mukherjee S, Ebert BL, Gillette MA, Paulovich A, Pomeroy SL, Golub
TR, Lander ES, et al: Gene set enrichment analysis: A
knowledge-based approach for interpreting genome-wide expression
profiles. Proc Natl Acad Sci USA. 102:15545–15550. 2005. View Article : Google Scholar : PubMed/NCBI
|
31
|
Merico D, Isserlin R, Stueker O, Emili A
and Bader GD: Enrichment map: A network-based method for gene-set
enrichment visualization and interpretation. PloS One.
5:e139842010. View Article : Google Scholar : PubMed/NCBI
|
32
|
Huang W, Sherman BT and Lempicki RA:
Bioinformatics enrichment tools: Paths toward the comprehensive
functional analysis of large gene lists. Nucleic Acids Res.
37:1–13. 2009. View Article : Google Scholar :
|
33
|
Dinger ME, Pang KC, Mercer TR, Crowe ML,
Grimmond SM and Mattick JS: NRED: A database of long noncoding RNA
expression. Nucleic Acids Res. 37:D122–D126. 2009. View Article : Google Scholar :
|
34
|
Du Z, Fei T, Verhaak RG, Su Z, Zhang Y,
Brown M, Chen Y and Liu XS: Integrative genomic analyses reveal
clinically relevant long noncoding RNAs in human cancer. Nat Struct
Mol Biol. 20:908–913. 2013. View Article : Google Scholar : PubMed/NCBI
|
35
|
Williams GH and Stoeber K: The cell cycle
and cancer. J Pathol. 226:352–364. 2012. View Article : Google Scholar
|
36
|
Kim T, Jeon YJ, Cui R, Lee JH, Peng Y, Kim
SH, Tili E, Alder H and Croce CM: Role of MYC-regulated long
noncoding RNAs in cell cycle regulation and tumorigenesis. J Natl
Cancer Inst. 107:pii: dju505. 2015. View Article : Google Scholar
|
37
|
Macheret M and Halazonetis TD: DNA
replication stress as a hallmark of cancer. Annu Rev Pathol.
10:425–448. 2015. View Article : Google Scholar : PubMed/NCBI
|
38
|
Yang G, Lu X and Yuan L: lncRNA: A link
between RNA and cancer. Biochim Biophys Acta. 1839:1097–1109. 2014.
View Article : Google Scholar : PubMed/NCBI
|
39
|
Li J, Chen Z, Tian L, Zhou C, He MY, Gao
Y, Wang S, Zhou F, Shi S, Feng X, et al: LncRNA profile study
reveals a three-lncRNA signature associated with the survival of
patients with oesophageal squamous cell carcinoma. Gut.
63:1700–1710. 2014. View Article : Google Scholar : PubMed/NCBI
|
40
|
Fernando TR, Rodriguez-Malave NI, Waters
EV, Yan W, Casero D, Basso G, Pigazzi M and Rao DS: lncRNA
expression discriminates karyotype and predicts survival in
B-lymphoblastic leukemia. Mol Cancer Res. 13:839–851. 2015.
View Article : Google Scholar : PubMed/NCBI
|
41
|
Yang YR, Zang SZ, Zhong CL, Li YX, Zhao SS
and Feng XJ: Increased expression of the lncRNA PVT1 promotes
tumorigenesis in non-small cell lung cancer. Int J Clin Exp Pathol.
7:6929–6935. 2014.PubMed/NCBI
|
42
|
Xie X, Liu HT, Mei J, Ding FB, Xiao HB, Hu
FQ, Hu R and Wang MS: LncRNA HMlincRNA717 is downregulated in
non-small cell lung cancer and associated with poor prognosis. Int
J Clin Exp Pathol. 7:8881–8886. 2014.
|
43
|
Han L, Zhang EB, Yin DD, Kong R, Xu TP,
Chen WM, Xia R, Shu YQ and De W: Low expression of long noncoding
RNA PANDAR predicts a poor prognosis of non-small cell lung cancer
and affects cell apoptosis by regulating Bcl-2. Cell Death Dis.
6:e16652015. View Article : Google Scholar : PubMed/NCBI
|
44
|
Lin L, Gu ZT, Chen WH and Cao KJ:
Increased expression of the long non-coding RNA ANRIL promotes lung
cancer cell metastasis and correlates with poor prognosis. Diagn
Pathol. 10:142015. View Article : Google Scholar : PubMed/NCBI
|
45
|
Zhang X, Sun S, Pu JK, Tsang AC, Lee D,
Man VO, Lui WM, Wong ST and Leung GK: Long non-coding RNA
expression profiles predict clinical phenotypes in glioma.
Neurobiol Dis. 48:1–8. 2012. View Article : Google Scholar : PubMed/NCBI
|
46
|
Zhou M, Guo M, He D, Wang X, Cui Y, Yang
H, Hao D and Sun J: A potential signature of eight long non-coding
RNAs predicts survival in patients with non-small cell lung cancer.
J Transl Med. 13:2312015. View Article : Google Scholar : PubMed/NCBI
|
47
|
Desjobert C, El Maï M, Gérard-Hirne T,
Guianvarc'h D, Carrier A, Pottier C, Arimondo PB and Riond J:
Combined analysis of DNA methylation and cell cycle in cancer
cells. Epigenetics. 10:82–91. 2015. View Article : Google Scholar :
|
48
|
Tachibana KE, Gonzalez MA and Coleman N:
Cell-cycle-dependent regulation of DNA replication and its
relevance to cancer pathology. J Pathol. 205:123–129. 2005.
View Article : Google Scholar : PubMed/NCBI
|
49
|
Falaschi A, Abdurashidova G and Biamonti
G: DNA replication, development and cancer: A homeotic connection?
Crit Rev Biochem Mol Biol. 45:14–22. 2010. View Article : Google Scholar
|