1
|
Yang Y, Ge H, Li DQ and Xu AX: E2F1-Induced lncRNA BAIAP2-AS1 overexpression contributes to the malignant progression of hepatocellular carcinoma via miR-361-3p/SOX4 axis. Dis Markers. 2021(6256369)2021.PubMed/NCBI View Article : Google Scholar
|
2
|
Hinkel R, Batkai S, Bähr A, Bozoglu T, Straub S, Borchert T, Viereck J, Howe A, Hornaschewitz N, Oberberger L, et al: AntimiR-132 attenuates myocardial hypertrophy in an animal model of percutaneous aortic constriction. J Am Coll Cardiol. 77:2923–2935. 2021.PubMed/NCBI View Article : Google Scholar
|
3
|
Täubel J, Hauke W, Rump S, Viereck J, Batkai S, Poetzsch J, Rode L, Weigt H, Genschel C, Lorch U, et al: Novel antisense therapy targeting microRNA-132 in patients with heart failure: Results of a first-in-human Phase 1b randomized, double-blind, placebo-controlled study. Eur Heart J. 42:178–188. 2021.PubMed/NCBI View Article : Google Scholar
|
4
|
Martin SE, Gan H, Toomer G, Sridhar N and Sztuba-Solinska J: The m6A landscape of polyadenylated nuclear (PAN) RNA and its related methylome in the context of KSHV replication. RNA. 27:1102–1125. 2021.PubMed/NCBI View Article : Google Scholar
|
5
|
Pereira M, Ribeiro DR, Pinheiro MM, Ferreira M, Kellner S and Soares AR: m 5 U54 tRNA Hypomodification by Lack of TRMT2A Drives the Generation of tRNA-Derived Small RNAs. Int J Mol Sci. 22(2941)2021.PubMed/NCBI View Article : Google Scholar
|
6
|
Youness RA and Gad MZ: Long non-coding RNAs: Functional regulatory players in breast cancer. Noncoding RNA Res. 4:36–44. 2019.PubMed/NCBI View Article : Google Scholar : Erratum in: Noncoding RNA Res 5: 219, 2020.
|
7
|
Kim YK, Kim B and Kim VN: Re-evaluation of the roles of DROSHA, Export in 5, and DICER in microRNA biogenesis. Proc Natl Acad Sci USA. 113:E1881–E1889. 2016.PubMed/NCBI View Article : Google Scholar
|
8
|
Kwon SC, Nguyen TA, Choi YG, Jo MH, Hohng S, Kim VN and Woo JS: Structure of Human DROSHA. Cell. 164:81–90. 2016.PubMed/NCBI View Article : Google Scholar
|
9
|
Kim B, Jeong K and Kim VN: Genome-wide Mapping of DROSHA Cleavage Sites on Primary MicroRNAs and Noncanonical Substrates. Mol Cell. 66:258–269.e5. 2017.PubMed/NCBI View Article : Google Scholar
|
10
|
Ramilowski JA, Yip CW, Agrawal S, Chang JC, Ciani Y, Kulakovskiy IV, Mendez M, Ooi JLC, Ouyang JF, Parkinson N, et al: Functional annotation of human long noncoding RNAs via molecular phenotyping. Genome Res. 30:1060–1072. 2020.PubMed/NCBI View Article : Google Scholar
|
11
|
Moody J, Kouno T, Suzuki A, Shibayama Y, Terao C, Chang JC, López-Redondo F, Yip CW, Ando Y, Yamamoto K, et al: Profiling of transcribed cis-regulatory elements in single cells. bioRxiv: doi: https://doi.org/10.1101/2021.04.04.438388.
|
12
|
Saadeldin MK, Abdel-Aziz AK and Abdellatif A: Dendritic cell vaccine immunotherapy; the beginning of the end of cancer and COVID-19. A hypothesis. Med Hypotheses. 146(110365)2021.PubMed/NCBI View Article : Google Scholar
|
13
|
Shao W, Bi X, Gao B, Wu J, Pan Y, Yin Y, Liu Z, Zhang W, Jiang X, Ren W, et al: Phase separation of RNA-binding protein promotes polymerase engagement and transcription. bioRxiv: doi: https://doi.org/10.1101/2021.03.26.436939.
|
14
|
Nithin C, Ghosh P and Bujnicki JM: Bioinformatics tools and benchmarks for computational docking and 3D structure prediction of RNA-protein complexes. Genes (Basel). 9(432)2018.PubMed/NCBI View Article : Google Scholar
|
15
|
Ponce-Salvatierra A, Astha Merdas K, Nithin C, Ghosh P, Mukherjee S and Bujnicki JM: Computational modeling of RNA 3D structure based on experimental data. Biosci Rep. 39(BSR20180430)2019.PubMed/NCBI View Article : Google Scholar
|
16
|
Boniecki MJ, Lach G, Dawson WK, Tomala K, Lukasz P, Soltysinski T, Rother KM and Bujnicki JM: SimRNA: A coarse-grained method for RNA folding simulations and 3D structure prediction. Nucleic Acids Res. 44(e63)2016.PubMed/NCBI View Article : Google Scholar
|
17
|
Chen H, Egger M, Xu X, Flemmich L, Krasheninina O, Sun A, Micura R and Ren A: Structural distinctions between NAD+ riboswitch domains 1 and 2 determine differential folding and ligand binding. Nucleic Acids Res. 48:12394–12406. 2020.PubMed/NCBI View Article : Google Scholar
|
18
|
Ishida K, Miyauchi K, Kimura Y, Mito M, Okada S, Suzuki T and Nakagawa S: Regulation of gene expression via retrotransposon insertions and the noncoding RNA 4.5S RNAH. Genes Cells. 20:887–901. 2015.PubMed/NCBI View Article : Google Scholar
|
19
|
Errichelli L, Dini Modigliani S, Laneve P, Colantoni A, Legnini I, Capauto D, Rosa A, De Santis R, Scarfò R, Peruzzi G, et al: FUS affects circular RNA expression in murine embryonic stem cell-derived motor neurons. Nat Commun. 8(14741)2017.PubMed/NCBI View Article : Google Scholar
|
20
|
Gandhi M, Groß M, Holler JM, Coggins SAA, Patil N, Leupold JH, Munschauer M, Schenone M, Hartigan CR, Allgayer H, et al: The lncRNA lincNMR regulates nucleotide metabolism via a YBX1-RRM2 axis in cancer. Nat Commun. 11(3214)2020.PubMed/NCBI View Article : Google Scholar
|
21
|
Caudron-Herger M, Rusin SF, Adamo ME, Seiler J, Schmid VK, Barreau E, Kettenbach AN and Diederichs S: R-DeeP: Proteome-wide and Quantitative Identification of RNA-Dependent Proteins by Density Gradient Ultracentrifugation. Mol Cell. 75:184–199.e10. 2019.PubMed/NCBI View Article : Google Scholar
|
22
|
Caudron-Herger M, Wassmer E, Nasa I, Schultz A-S, Seiler J, Kettenbach AN and Diederichs S: Identification, quantification and bioinformatic analysis of RNA-dependent proteins by RNase treatment and density gradient ultracentrifugation using R-DeeP. Nat Protoc. 15:1338–1370. 2020.PubMed/NCBI View Article : Google Scholar
|
23
|
Zhu S, Li W, Liu J, Chen CH, Liao Q, Xu P, Xu H, Xiao T, Cao Z, Peng J, et al: Genome-scale deletion screening of human long non-coding RNAs using a paired-guide RNA CRISPR-Cas9 library. Nat Biotechnol. 34:1279–1286. 2016.PubMed/NCBI View Article : Google Scholar
|
24
|
Qu L, Yi Z, Zhu S, Wang C, Cao Z, Zhou Z, Yuan P, Yu Y, Tian F, Liu Z, et al: Programmable RNA editing by recruiting endogenous ADAR using engineered RNAs. Nat Biotechnol. 37:1059–1069. 2019.PubMed/NCBI View Article : Google Scholar : Erratum in: Nat Biotechnol 37: 1380, 2019.
|
25
|
Tichon A, Perry RBT, Stojic L and Ulitsky I: SAM68 is required for regulation of Pumilio by the NORAD long noncoding RNA. Genes Dev. 32:70–78. 2018.PubMed/NCBI View Article : Google Scholar
|