Direct thrombin inhibitors: Patents 2002-2012 (Review)

  • Authors:
    • Yi Kong
    • Hao Chen
    • Yong-Qing Wang
    • Ling Meng
    • Ji-Fu Wei
  • View Affiliations

  • Published online on: March 6, 2014     https://doi.org/10.3892/mmr.2014.2025
  • Pages: 1506-1514
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Abstract

Acute vascular diseases and other thromboses of the blood system constitute major health risks in developing countries. Thrombin plays a central role in blood coagulation, which is a crucial process involved in thrombosis. Direct thrombin inhibitors (DTIs) such as argatroban, dabigatran, dabigatran etexilate, lepirudin, desirudin and bivalirudin, which bind to thrombin and block its enzymatic activity, are widely and effectively used in the treatment of thromboembolic diseases. DTIs appear to overcome the disadvantages of indirect thrombin inhibitors such as unfractionated heparins (UFH). Although these DTIs show specific advantages over indirect inhibitors, they still present limitations, such as a narrow therapeutic window, and bleeding and anaphylaxis as side-effects. Novel anticoagulant drugs need thus to be developed to overcome these limitations. In the search for additional candidate agents with improved efficacy, safety and high bioavailability in oral administration, a high number of compounds has been identified, such as those derived from the tripeptide template D-Phe-Pro-Arg, aptamers and peptides isolated from blood-sucking animals. These candidates may prove the new agents of choice for the treatment of cardiovascular diseases.

1. Introduction

Acute vascular diseases, such as myocardial infarction, stroke, pulmonary embolism (PE), deep vein thrombosis (DVT), atrial fibrillation (AF), peripheral arterial occlusion, and other thromboses of the blood system constitute major health risks. As of 2008, there were ~2.3 million people in the United States diagnosed with AF, a number estimated to increase to 5.6–10 million by 2050. The incidence of hospital-acquired DVT is ~10–40% among medical patients or those undergoing general surgery and 40–60% for those following major orthopedic surgery without prophylaxis. Moreover, ~10% of deaths in the hospital are caused by PE. Vascular diseases are caused by either partial or total occlusion of a blood vessel by a thrombus, which contains fibrin and platelets. Blood coagulation is a crucial process involved in thrombosis (1).

Thrombin plays a central role in blood coagulation. It is a Na+-activated (2), trypsin-like serine protease, activated from a larger precursor protein (pro-thrombin). The active form of thrombin (α-thrombin) consists of a 36-amino acid light chain (A chain) and a 259-amino acid peptidase domain (B chain) covalently linked by a disulfide bridge (3). The active site of thrombin has three pockets: S1, S2 and S3. Pocket S1 contains an aspartic acid residue (Asp-189) at its bottom, which serves as the recognition site for the basic side chain. Pocket S2 occludes a hydrophobic pocket in the proximity of the Trp-60D residue; this pocket can accept larger aliphatic residues, such as valine and proline. Pocket S3 is flat and exposed to the solvent. Besides the active site, thrombin has two important regulatory regions, exosites 1 and 2. Exosite 1 was shown to be involved in the binding to fibrinogen, factor V, VIII, thrombomodulin and platelet protease-activated receptors (PARs), and exosite 2 was shown to be involved in the binding to factor V, VIII, platelet glycoprotein Ibα (GPIbα) and heparin (4). Thrombin plays a central role in maintaining the integrity of hemostasis. It interacts with most of the zymogens and their cofactors, and plays both pro- and anticoagulant roles in the blood (Fig. 1). Thrombin activates platelets, leading to platelet aggregation. It converts fibrinogen into fibrin monomers, which spontaneously polymerize into fibrin polymers and activate factor XIII, a protein involved in fibrin cross-linking and clot stabilization. Thrombin also activates factor V and VIII in a positive feedback reaction (5).

Anticoagulant therapy plays an essential role in the primary and secondary prevention of thromboembolic diseases (6). Unfractionated heparins (UFH), low molecular weight heparins (LMWH) and vitamin K antagonists (VKAs) are classified as indirect thrombin inhibitors. They have been widely and effectively used in certain cardiovascular and thromboembolic diseases for a number of years (7). However, their limitations are important and well-recognized. Heparins have to be parenterally administered and their activity requires cofactors such as anti-thrombin III. Moreover, their anticoagulant effects are variable due to non-specific protein binding, and therefore their dosage must be monitored by laboratory tests. In addition, treatment with heparins can cause a serious immune disorder known as heparin-induced thrombocytopenia (HIT) and can lead to osteoporosis in the long term. The main disadvantages of VKAs are the requirement of regular dose adjustments by monitoring of their anticoagulant effects; multiple food-drug and drug-drug interactions; severe intracranial and extracranial bleeding complications, and other severe side-effects such as coumarin-induced hepatitis (8). These limitations have led to the development of direct thrombin inhibitors (DTIs).

DTIs are agents that directly inhibit thrombin by binding to its active catalytic site and blocking its enzymatic activity. They have some advantages over the indirect agents: DTIs do not require cofactors to exert their effect; they can inhibit both soluble thrombin and fibrin-bound thrombin (9); they have an immediate onset of action and ideally affect only the target enzyme thus their anticoagulant effects are more predictable compared to those of heparins (7); DTIs can treat HIT instead of causing it and they are effective in cases where heparin treatment fails. These are some of the reasons for the widespread use of DTIs in the treatment of several acute vascular diseases.

2. Direct thrombin inhibitors

Argatroban

Argatroban (Fig. 2A) is a synthetic arginine-derived direct thrombin inhibitor that exerts a stronger anticoagulant effect compared to heparins and hirudins at equivalent levels. It is hepatically metabolized and predominantly eliminated through the biliary system (7). Dose adjustments are necessary in patients with hepatic, but not renal, impairment. The bioavailability of orally administered argatroban is negligible and therefore, it needs to be administered by infusion. Its half-life is ~30 min. Argatroban can be used as a parenteral anticoagulant for all cases where intravenous administration of heparin is prescribed. It was approved by the Food and Drug Administration (FDA) in 2000 for the treatment of HIT and interventional anticoagulation during percutaneous coronary intervention (PCI). An increased dosage can be used for a coronary artery bypass graft, and a lower dosage can be used for DVT treatment (10). Argatroban passes through endovascular and cellular barriers owing to its low molecular weight. It is therefore effective for the antithrombotic treatment of microvascular disorders (11).

Dabigatran

Dabigatran (Fig. 2B) is a synthetic benzamidine-derived direct thrombin inhibitor that rapidly and directly inhibits both free and fibrin-bound thrombin (7). It also exerts an inhibitory effect on thrombin-induced platelet aggregation and prevents the conversion of fibrinogen to fibrin. Dabigatran is metabolized by the glycoprotein system and eliminated through the kidneys (12). However, the absolute bioavailability of dabigatran after oral absorption is very low (6–7%) (13). Dabigatran was the first anticoagulant approved by the FDA for primary prevention of ischemic stroke and systemic thromboembolism in patients without valvular atrial fibrillation (7).

Dabigatran etexilate

Dabigatran etexilate (Fig. 2C) is an orally administered direct thrombin inhibitor, developed to overcome the limited oral bioavailability of dabigatran. Once absorbed from the gastrointestinal tract, it is rapidly converted to the active form dabigatran. Bioconversion of dabigatran etexilate to dabigatran occurs in enterocytes, hepatocytes and the portal vein. Dabigatran circulates in the blood with a half-life of 12–17 h, which allows oral administration once a day. With a low potential for drug-drug interactions and a predictable anticoagulant effect, dabigatran etexilate can be administered in fixed doses without need for monitoring coagulation (14). In 2008, dabigatran etexilate was approved as a primary preventive agent for venous thromboembolic events (VTEs) in adult patients who underwent elective total hip or total knee replacement surgery in Europe. In October 2010, it was approved by the FDA to reduce the risk of stroke and systemic embolism in patients with non-valvular atrial fibrillation. However, this inhibitor is not currently indicated for treatment of any VTE in the USA (15).

Lepirudin and desirudin

Hirudin is isolated from the salivary glands of medicinal leeches, and has been used as an anticoagulant agent since 1909. Lepirudin and desirudin are two derivatives of hirudin. Lepirudin is composed of 65 amino acids that directly inhibit thrombin by simultaneously binding to its active site and to exosite 1. Lepirudin is intravenously infused and its dosage is dependent on body weight. It is eliminated through the kidneys, which accounts for ~90% of the systemic clearance. Lepirudin is licensed for the treatment of thrombosis complicating HIT. Moreover, unstable angina is an additional syndrome that lepirudin has the potential to treat (16).

Desirudin differs from lepirudin only in the first two N-terminal amino acids. It is also eliminated through the kidneys, accounting for 90% of the systemic clearance. Desirudin reaches maximal plasma concentrations 1–3 h after administration and has a terminal half-life of 2 h. In 2010, desirudin became the only FDA-approved fixed-dose subcutaneously administered DTI for the post-operative prevention of VTE in patients undergoing elective hip replacement surgery (17). Currently, desirudin is under investigation as a potential anticoagulant for HIT patients presenting or not thrombosis (3).

Bivalirudin

Bivalirudin is a synthetic analog of hirudin. It is a small polypeptide comprising 20 amino acids (D-Phe- Pro-Arg-Pro-Gly-Gly-Gly-Gly-Asn-Gly-Asp-Phe-Glu-Glu-Ile-Pro-Glu-Glu-Tyr-Leu). The N-terminal D-Phe-Pro-Arg-Pro region binds to the active site of thrombin with high affinity, and the C-terminal dodecapeptide Asn-Gly-Asp-Phe-Glu-Glu-Ile-Pro-Glu-Glu-Tyr-Leu binds to exosite 1 of thrombin (18). Bivalirudin exhibits a short half-life (25 min), predominantly non-renal metabolism, and low immunogenicity. It achieves peak plasma concentration within 2 min of intravenous bolus injection. Bivalirudin is primarily used for the treatment of percutaneous transluminal coronary angioplasty, the most frequent type of PCI. It is also indicated for PCI when provisional therapy with the GPIIb/IIIa antagonist is employed, and for patients with HIT or HIT with thrombosis syndrome (HITTS) undergoing PCI (19).

3. The development of direct thrombin inhibitors

Alhough these DTIs show specific advantages compared to indirect thrombin inhibitors, they still have limitations such as a narrow therapeutic window, and bleeding and anaphylaxis as side-effects. Approximately 80% of circulating dabigatran is eliminated through the kidneys in a manner that its plasma concentrations increase in renal insufficiency. Consequently, it is contraindicated in patients with renal failure (20). Argatroban and hirudins require dose adjustment guided by monitoring of their anticoagulant effect (8). Lepirudin may associate with anaphylaxis, while another significant limitation of this compound is its narrow therapeutic window (21). The main clinical disadvantage of bivalirudin is that it has no known antidote. Desirudin is associated with antibody formation in 10% of recipients, although these antibodies do not appear to be inhibitory as desirudin potency is not affected by their presence (22). Although these specific disadvantages can be serious, the main and common disadvantage of all DTIs is the risk of bleeding.

These limitations have prompted the search for new anticoagulant drugs, which ideally, would be orally available, present no bleeding complications, and have a suitable half-life.

Low molecular weight thrombin inhibitor candidates

Previous studies have suggested that thrombin inhibitors that contain the tripeptide template D-Phe-Pro-Arg (P3-P2-P1), such as argatroban and dabigatran, are the most effective (23,24). This tripeptide can bind to multiple amino acids at the thrombin active site. It can bind to arginines, especially the positively-charged guanidine group interacting with the Asp-189 residue at the bottom of the S1 pocket. Hydrophobic amino acids, such as proline in the P2 position, can bind to the S2 pocket, and aromatic groups in the P3 position can interact with the lipophilic and aromatic fragments of the S3 pocket (25).

Typically, DTIs possess a P1 group that fills the specific S1 pocket. Generally, to produce potent inhibitors, the P1 ligand features a strongly basic functional group such as guanidine (argatroban), alkylamine, amidine, benzamidine (dabigatran), or 4-aminopyridine (26). Patents WO00/42059 (27), US2007/0249578 A1 (28) and US2010/0087651 Al (29) disclosed a series of compounds in which the P1 position was replaced with amidino, benzamidine, or their analogs. For example, compound 1 (Fig. 3), derived from formula 1 (Fig. 3), has an IC50 of prothrombin time (PT) <0.02 μM, and an IC50 of activated partial thromboplastin time (APTT) <1 μM. Compounds containing strongly basic amines in the P1 position have poor oral absorption properties and poor pharmacokinetics, because the basic amines are protonated at the pH of the intestinal tract.

Strategies to overcome these shortcomings include the use of a prodrug with a masked, weakly basic or non-basic, P1 group, such as dabigatran etexilate (30). N-hydroxylated derivatives such as amidoxime and benzamidoxime, are less basic because of the introduced oxygen atom. They are not protonated under physiological conditions and are expected to have sufficient oral absorption, and therefore, improved bioavailability (31). Patent US2008/0004256 A1 (32) disclosed a series of compounds derived from formula 2 (Fig. 3). Compound 2 (Fig. 3), where the P1 position is replaced by benzamidoxime, is the most bioavailable of these compounds. The inhibition constant (Ki) values for thrombin and trypsin are 0.59 and 32.23 μM, respectively, for this compound. Azoles (26,33) (such as imidazoles, aminothiazoles and N-acetamidoimidazole) and aryl heterocycles (pyridines, pyrazinones, piperidines and pyridinones) are also weakly basic groups. When they are incorporated into the P1 position, the resulting peptides exhibit very good selectivity for thrombin vs. trypsin and lower in vivo toxicity.

A recent study (25) demonstrated that the P1 fragment of the inhibitor does not need to contain a highly basic functional group to efficiently inhibit thrombin. The chlorophenyl fragment in the P1 position can be deeply inserted into the S1 pocket of the thrombin active site (25). In addition, heterocycle-substituted chlorophenyl incorporated into the P1 group was shown to provide more potent inhibitors (34). Patent US8119673 B2 (35) disclosed and described 57 D-Phe-Pro-Arg derivatives with heterocycle-substituted chlorophenyl incorporated into the P1 position, along with their synthetic routes. Compounds 3A and 3B (Fig. 3) were claimed in this patent. Their IC50 values are 4 and 120 nM, respectively, according to a chromogenic robotic assay.

The P2 position of the tripeptide is important, not only in relation to its thrombin inhibitory activity, but also in relation to the oral bioavailability. In previous studies, it was found that using dehydroproline to replace the proline of the tripeptide slightly increases the in vitro potency, in vivo activity, and oral bioavailability (36), replacing it with 4-fluoroproline increased the oral bioavailability (34) and replacing it with a pyrazinone ring increased both activity and oral bioavailability (37). For example, compound 4 (Fig. 3), first described in patent US6455532 B1 (38), is a potentially new thrombin inhibitor with 3-aminopyrazinone in the P2 position. It inhibited thrombin activity with a Ki of 5.2 nM. The 3-aminopyrazinone in the P2 position of compound 3 played a crucial role in thrombin inhibition by forming an hydrogen bond with Gly-216 of thrombin. However, it was less resistant to oxidative metabolism. Researchers from Merck Research Laboratories found that 2-aminopyridine N-oxide in the P2 position confers reduced metabolic liability compared to that of pyrazinones (39).

Derivatives of organoboronic acids exhibit thrombin inhibitory activity. Patent US20070185060 A1 (40) disclosed a series of organoboronic acid compounds such as compound 5 (Fig. 4). This compound has thrombin inhibitory activity with an IC50 <0.1 μm. It has a neutral aminoboronic acid residue, which can bind thrombin S1, linked to a hydrophobic moiety, which can bind thrombin S2 and S3. 1,4-Benzoxazine-3(4H)-one was found to be a suitable scaffold for a thrombin inhibitor. Compound 6 (Fig. 4), which was derived from this scaffold, is a highly potent and selective thrombin inhibitor with Ki of 2.6 nM for thrombin and 112,400-fold selectivity for trypsin. Due to the presence of the benzamidine moiety, it has considerable potential to show improved bioavailability and be developed as an orally active prodrug (41). Compounds derived from formula 3 (Fig. 4) are a series of non-peptide thrombin inhibitors that are described in patent WO2012/174865 A1 (42). These compounds have higher thrombin inhibitory activities compared to dabigatran etexilate. Non-classic tripeptide templates such as Tos-Phe-Arg-OCH3 and X-D-Arg-D-Phe-OMe can also act as thrombin inhibitors. When X is replaced by myristic acid, the compound (Fig. 4) has high activity in thrombin inhibition (Ki=0.17 μM) and high selectivity towards thrombin in comparison to factor X, plasmin, and trypsin (>600-, 900- and 5,000-fold, respectively) (43).

Aptamers are 15–40 nucleotide, single-stranded DNA or RNA molecules forming three-dimensional structures that bind to their molecular targets with affinity and specificity (44,45). Due to their high binding affinities for target macromolecules, aptamers can act as inhibitors (46). ARC-183, or HD1, is a 15-nucleotide DNA molecule discovered in the 1990s. It is a strong anticoagulant in vitro, and inhibits the thrombin-catalyzed activation of fibrinogen and thrombin-induced platelet aggregation by binding to exosite 1. Despite its high affinity (Kd=30 nM), it has a short half-life (2.5 min). In order to overcome this disadvantage, another DNA aptamer (NU172) was developed. This aptamer binds to thrombin with a Kd of 100 pM and has a half-life of 25 min when tested in pigs. Toggle-25 is a 25-nucleotide RNA aptamer that contains 2′-fluoropyrimidine nucleotides selected to bind exosite 2 of thrombin with high specificity and affinity (Kd=2nM) (47). Other thrombin inhibitors, such as the DNA aptamer RE31 (48), the RNA aptamer HD22 (49), and R9D-14 (50) were also identified. These aptamers possess properties that render them especially suitable for use as thrombin inhibitors: they typically exhibit high affinity and specific binding to the target protein, and demonstrate little to no toxicity or immunogenicity (51).

Derivatives of natural substances

The widely used in the clinic anticoagulant drugs such as hirudin and its analog lepirudin were isolated from blood-sucking leeches. For these animals to feed on blood from mammalian hosts, they need to prevent local clotting of the host’s blood. These parasites have developed various anti-clotting mechanisms, including the specific inhibition of thrombin (52). In addition to hirudin, which was first described in 1884 (53), other thrombin inhibitors such as haemadin, bufrudin and theromin have been isolated from various species of leeches (54). Haemadin is a slow, tight-binding thrombin inhibitor isolated from the species Haemadipsa sylvestris with an apparent molecular mass of 5 kDa. It exhibits a Ki as low as 100 fM (55). Bufrudin was isolated from the species Hirudinaria manillensis and has 66% sequence homology with hirudin, indicating that it acts as a similar inhibitor (56). Theromin, isolated from the gut leech Theromyzon tessulatum, is the most potent inhibitor (Ki of 12 vs. 21 fM for hirudin). It is a homodimer of 67 amino acid residues with 16 cysteines engaged in eight disulfide bridges (57).

Additional agents targeting thrombin were obtained from various hematophagous animals such as mosquitoes, ticks, and insects. Mosquito saliva carries a high number of factors with anticoagulant activities. Anophelin is a peptide with a molecular weight of 6.5 kDa, isolated from the salivary glands of the mosquito species Anopheles albimanus. It inhibits thrombin with an IC50 of 45 nM and binds to both the active site and exosite 1 (58). An additional peptide of 45 kDa was identified and isolated from the salivary glands of the malarial vector mosquito Anopheles stephensi. It inhibits thrombin only by binding to the active site (59). AaTI is another peptide from the mosquito Aedes aegypti, which inhibits thrombin by binding to exosite 2 (60).

A few potential thrombin inhibitors were also isolated from ticks. Boophilin is a novel 20 kDa thrombin inhibitor isolated from the cattle tick Boophilus microplus. It inhibits thrombin with a Ki of 57 pM by binding to the active site and exosite 1 (61). Boophilin is composed of two canonical Kunitz domains, which inhibit not only thrombin, but also, other serine proteases (62). Microphilin is the smallest salivary thrombin inhibitor peptide known to date, with a molecular weight of 1.7 kDa. It was also isolated from the cattle tick Boophilus microplus. Microphilin inhibits thrombin in a dose-dependent manner with an IC50 of 5.5 μM (63). From the midgut of the parthenogenetic tick species Haemaphysalis longicornis (Ixodidae), another thrombin inhibitor was isolated, known as hemalin. It contains two Kunitz domains and has high homology to boophilin. Hemalin inhibits thrombin in a dose-dependent manner with a Ki of 0.25 μM. It also inhibited both thrombin-induced fibrinogen clotting and thrombin-induced platelet aggregation (64). From the same species, two additional proteins that inhibit thrombin by binding to exosite 1 were identified, madanin 1 and 2 (65).

Other thrombin inhibitors such as triabin, infestin, brasiliensin and dipetalogastin were identified and isolated from blood-sucking insects. Triabin was purified from the saliva of Triatoma pallidipennis (66). Infestin was isolated from midguts of Triatoma infestans (67). Brasiliensin was identified and isolated from Triatoma brasiliensis (68). Dipetalogastin was found and isolated from Dipetalogaster maximus (69).

Besides these blood-sucking animals, other natural sources of compounds targeting thrombin include snake and wasp venom, and skin secretions of toads. TTI-Nh is a new 14.3-kDa protein isolated from venom of the cobra species Naja haje, and consisting of a single polypeptide chain with 14 cysteine residues that form seven intramolecular disulfide bridges. It inhibits thrombin with an IC50 of 73 nM without any cytotoxic side-effects (70). Bothrojaracin is a 27-kDa anticoagulant protein isolated from the venom of the viper Bothrops jararaca. It inhibits thrombin by binding to exosites 1 and 2 (71). Bicolin was purified and characterized from the venom of wasps. It showed inhibitory activity against trypsin and thrombin (72). BMSI-1 is a serine protease inhibitor identified from skin secretions of the toad Bombina microdeladigitora. It inhibits trypsin and thrombin with a Ki of 0.02 and 0.15 μM, respectively. Furthermore, the activity of BMSI-1 was not lost after incubation in boiling water for 10 min, indicating that BMSI-1 is a thermally highly stable inhibitor (73).

Natural flavonoids such as myricetin and quercetin (Fig. 5) were discovered to act as thrombin inhibitors, but with low activity. The IC50 of TT is 0.006 and 0.035 mM for myricetin and quercetin, respectively (74). Glycerolipids, especially the diacylglycerophospholipids isolated from the fungus Stereum hirsutum, can inhibit thrombin by binding to its active site (75). Scutellarin (Fig. 5), the major anti-oxidant in breviscapine extracted from the plant species Erigeron breviscapus, was clinically effective in treating acute cerebral infarction and paralysis induced by cerebrovascular diseases. However, it has certain disadvantages, such as low solubility in water and low bioavailability. Scutellarein (Fig. 5), the hydrolyzed product and metabolic form of scutellarin, was used to design and synthesize derivatives with improved biological activity and water solubility. Many of these derivatives, especially the morpholinyl aminomethylene substituent, showed stronger anticoagulant activity and higher solubility in water (76). A recent study identified thrombin inhibitors isolated from the freshwater cyanobacterium Anabaena compacta. These molecules, known as spumigin J and A (Fig. 5), inhibited thrombin with EC50 values of 4.9 and 2.1 μM, respectively. In addition, the two compounds showed higher inhibitory activity against cathepsin B, with EC50 values of 0.7 and 0.2 μM, respectively (77). Chlorodysinosin A, dysinosin A and oscillarin (Fig. 5), three natural products that belong to the aeruginosin family of serine protease inhibitors, exhibit low inhibitory activity against thrombin in vitro (IC50=5.8, 46 and 28 nM, respectively). These molecules inhibit thrombin owing to their hydrophobic interactions with the S3 site of thrombin (78).

4. Discussion

Thrombotic diseases are major causes of mortality and morbidity in the industrial world. Thrombin, which plays an important role in blood coagulation, is a key cause of thrombotic diseases. Indirect thrombin inhibitors such as heparins and VKAs are widely used in the treatment of thrombotic diseases despite their serious disadvantages. DTIs were developed as potential drugs allowing to overcome these disadvantages while still maintaining pharmacological activity.

In this review, we briefly summarized the advantages and disadvantages of DTIs. These agents have several advantages over indirect ones, such as direct inhibition of free and clot-bound thrombin, lack of required cofactors, more predictable anticoagulant response, and the fact that they do not cause immune-mediated thrombocytopenia. Despite their effective clinical use, they have some adverse effects. Bleeding is the side-effect of almost all anti-thrombotic agents. Eliminating or reducing the bleeding may be the aim of future studies. There are currently no DTI-specific antidotes that show potential to reduce bleeding, therefore developing such drugs is also a desired direction for future research. For example, an aptamer termed JPB5 was shown to act as an antidote, thus providing a superior safety profile for bivalirudin (79). In addition to bleeding, some DTIs have a narrow therapeutic window, making it is necessary to adjust the dose by monitoring their anticoagulant effect. This is another issue that needs to be solved in the future. Additionally, future exploration of additional effects of these new agents is necessary. For example, dabigatran etexilate can be also used to treat cerebral venous thrombosis (80).

In the search for new direct thrombin inhibitors, many candidate compounds were discovered. Compounds based on the amino acid sequence Phe-Val-Arg (P3-P2-P1) were confirmed to be effective inhibitors. Argatroban, the derivative of arginine, and dabigatran, the derivative of benzamidine, are used effectively in the clinic. However, these derivatives were found to have low oral bioavailability and cytotoxicity. New direct thrombin inhibitors with improved properties need thus to be discovered or developed.

Aptamers have a few advantages such as high affinity and complete absence of toxicity and immunogenicity, which renders their use in pharmacological therapy an attractive approach. For example, pegaptanib is an aptamer that binds to the vascular endothelial growth factor (VEGF) and inhibits its biological activity. This aptamer was recently approved for therapeutic use for the treatment of age-related macular degeneration (81). Aptamers that inhibit thrombin in different developmental stages may also represent a powerful approach in antithrombotic therapies.

Hirudin is a well-known thrombin-inhibitory agent, first isolated from a blood-sucking animal. The finding of this compound inspired the search for new thrombin inhibitors, and numerous active agents against thrombin have been identified thereafter, isolated from blood-sucking animals such as mosquitos, ticks and bugs. These animals are so small in size that it is difficult to directly obtain active compounds from these, therefore genetic engineering is required to produce active thrombin-inhibitory agents. Some analogs and derivatives of natural compounds also exhibit inhibitory activity, such as the derivatives of hirudin, lepirudin and desirudin. High numbers of analogs or derivatives are expected to emerge from ongoing investigations. In addition, a few small molecular compounds isolated from plants and bacteria showed thrombin-inhibitory activity. Traditional Chinese medicine (TCM) has been employed for decades in the treatment of thrombotic diseases. Previous studies (82,83) have identified a number of compounds with thrombin-inhibitory activity isolated from medicine administered in TCM. Future studies on these TCM drugs may lead to the finding of new thrombin inhibitors.

Acknowledgements

This project was sponsored by grants from the National Natural Science Foundation of China (nos. 30972822, 81273274, 81273375 and 81273593), the Priority Academic Program Development of Jiangsu Higher Education Institutions, National Major Scientific, Technological Special Project for ‘Significant New Drugs Development’ (no. 2011ZX09302-003-02), the Jiangsu Province Major Scientific and Technological Special Project (no. BM2011017) and the Jiangsu Provincial Qing Lan Project.

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Spandidos Publications style
Kong Y, Chen H, Wang Y, Meng L and Wei J: Direct thrombin inhibitors: Patents 2002-2012 (Review). Mol Med Rep 9: 1506-1514, 2014.
APA
Kong, Y., Chen, H., Wang, Y., Meng, L., & Wei, J. (2014). Direct thrombin inhibitors: Patents 2002-2012 (Review). Molecular Medicine Reports, 9, 1506-1514. https://doi.org/10.3892/mmr.2014.2025
MLA
Kong, Y., Chen, H., Wang, Y., Meng, L., Wei, J."Direct thrombin inhibitors: Patents 2002-2012 (Review)". Molecular Medicine Reports 9.5 (2014): 1506-1514.
Chicago
Kong, Y., Chen, H., Wang, Y., Meng, L., Wei, J."Direct thrombin inhibitors: Patents 2002-2012 (Review)". Molecular Medicine Reports 9, no. 5 (2014): 1506-1514. https://doi.org/10.3892/mmr.2014.2025